Wall clock time and date at job start Sun Mar 7 2021 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21564 * 120.00279 * 0.02562 * 13 12 11 15 15 C 1.47694 * 119.99593 * 179.97438 * 13 12 11 16 16 C 1.39628 * 120.16382 * 359.73327 * 15 13 12 17 17 C 1.37899 * 119.87458 * 179.80775 * 16 15 13 18 18 C 1.50694 * 119.89182 * 180.18557 * 17 16 15 19 19 O 1.42899 * 109.47349 * 300.25508 * 18 17 16 20 20 Si 1.86300 * 109.47220 * 180.25682 * 18 17 16 21 21 H 1.48493 * 109.47468 * 60.00109 * 20 18 17 22 22 H 1.48503 * 109.47293 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47224 * 299.99659 * 20 18 17 24 24 C 1.38416 * 120.21825 * 0.44324 * 17 16 15 25 25 C 1.38246 * 120.34130 * 359.78441 * 24 17 16 26 26 C 1.38281 * 120.11699 * 0.02562 * 25 24 17 27 27 F 1.35096 * 120.11091 * 179.97438 * 26 25 24 28 28 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 29 29 C 1.37976 * 120.14217 * 0.02562 * 28 10 9 30 30 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 31 31 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 32 32 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 35 35 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 36 36 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 37 37 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 38 38 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 39 39 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 40 40 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 41 41 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 42 42 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 43 43 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 44 44 H 1.07996 * 120.06196 * 0.02562 * 16 15 13 45 45 H 1.09003 * 109.47478 * 60.25705 * 18 17 16 46 46 H 0.96698 * 114.00439 * 179.97438 * 19 18 17 47 47 H 1.08002 * 119.83094 * 179.76464 * 24 17 16 48 48 H 1.07997 * 119.94372 * 179.97438 * 25 24 17 49 49 H 1.07999 * 119.93193 * 179.97438 * 28 10 9 50 50 H 1.08003 * 120.07184 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0658 -5.7506 9.3162 15 6 3.0216 -6.8664 9.1403 16 6 1.8246 -7.0123 8.4365 17 6 0.8917 -7.9386 8.8526 18 6 -0.3986 -8.0993 8.0909 19 8 -1.1099 -6.8599 8.0918 20 14 -1.4398 -9.4134 8.9032 21 1 -1.7375 -9.0146 10.3023 22 1 -2.7111 -9.5722 8.1522 23 1 -0.7008 -10.7014 8.9022 24 6 1.1341 -8.7176 9.9708 25 6 2.3143 -8.5773 10.6771 26 6 3.2612 -7.6555 10.2700 27 9 4.4141 -7.5182 10.9605 28 6 3.5437 -2.2708 6.0695 29 6 3.0807 -1.6156 4.9469 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5739 1.7566 0.0005 34 1 2.1205 2.2703 -0.8900 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9058 -1.5212 37 1 2.1207 -0.3643 -2.4111 38 1 3.5740 -0.8777 -1.5214 39 1 4.3313 -3.6977 2.5772 40 1 5.1551 -4.8441 4.5914 41 1 5.7241 -4.6519 6.9391 42 1 4.9599 -3.4146 7.9655 43 1 2.9639 -5.2230 7.1154 44 1 1.6312 -6.4032 7.5659 45 1 -0.1803 -8.3921 7.0639 46 1 -1.9523 -6.8895 7.6179 47 1 0.3975 -9.4386 10.2933 48 1 2.4966 -9.1882 11.5488 49 1 3.3239 -1.8784 7.0514 50 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_12335834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:06:21 Heat of formation + Delta-G solvation = -55.406364 kcal Electronic energy + Delta-G solvation = -30608.101322 eV Core-core repulsion = 26218.252510 eV Total energy + Delta-G solvation = -4389.848812 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 385.142 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.04710 -41.45215 -40.51832 -39.78365 -37.47558 -36.47310 -34.51086 -33.01169 -32.43924 -32.10977 -31.31329 -29.44951 -28.27964 -28.27356 -27.59643 -26.60097 -25.27427 -23.77521 -23.34884 -22.56867 -21.60260 -19.54339 -19.34962 -18.64439 -18.28465 -17.91839 -17.06604 -16.92534 -16.66960 -16.61007 -16.20679 -15.99281 -15.83563 -15.79103 -15.66526 -14.77835 -14.66729 -14.54897 -14.44201 -14.28728 -14.14329 -14.10299 -13.91492 -13.88907 -13.82888 -13.82635 -13.31277 -13.16031 -13.15221 -12.97804 -12.79663 -12.65517 -12.45298 -12.38690 -12.20655 -11.99417 -11.97828 -11.79162 -11.60861 -11.28533 -10.79384 -10.63463 -10.51238 -10.38667 -10.21288 -10.07156 -9.79563 -9.53607 -0.55295 -0.31106 -0.06416 0.29070 1.16768 1.39130 1.48156 1.52842 1.53835 1.57720 1.71469 1.94005 1.98364 2.40067 2.40440 2.42414 2.48488 2.97910 3.00473 3.28933 3.38133 3.44337 3.57927 3.74222 3.75279 3.83114 3.90884 3.99328 4.12705 4.24575 4.29457 4.33684 4.52598 4.58112 4.59732 4.74097 4.79002 4.81502 4.84217 4.84737 4.87610 4.87961 4.90277 4.90507 4.93201 4.96413 5.11707 5.14456 5.18997 5.38156 5.42829 5.54297 5.59394 5.68797 5.69420 5.79430 6.28023 6.57925 6.82656 6.96575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.205 2.795 3 C -0.464 4.464 4 C -0.462 4.462 5 C -0.390 4.390 6 C -0.191 4.191 7 C -0.007 4.007 8 C -0.107 4.107 9 C -0.094 4.094 10 C -0.101 4.101 11 C 0.164 3.836 12 N -0.705 5.705 13 C 0.557 3.443 14 O -0.568 6.568 15 C -0.187 4.187 16 C -0.022 4.022 17 C -0.097 4.097 18 C -0.078 4.078 19 O -0.561 6.561 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.255 1.255 23 H -0.252 1.252 24 C -0.067 4.067 25 C -0.152 4.152 26 C 0.134 3.866 27 F -0.134 7.134 28 C -0.095 4.095 29 C -0.108 4.108 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.414 0.586 44 H 0.161 0.839 45 H 0.108 0.892 46 H 0.402 0.598 47 H 0.153 0.847 48 H 0.167 0.833 49 H 0.145 0.855 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -0.933 -6.791 10.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.386 2.614 3 C -0.571 4.571 4 C -0.570 4.570 5 C -0.421 4.421 6 C -0.191 4.191 7 C -0.007 4.007 8 C -0.125 4.125 9 C -0.112 4.112 10 C -0.101 4.101 11 C 0.042 3.958 12 N -0.358 5.358 13 C 0.345 3.655 14 O -0.448 6.448 15 C -0.191 4.191 16 C -0.040 4.040 17 C -0.098 4.098 18 C -0.188 4.188 19 O -0.370 6.370 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.180 1.180 23 H -0.176 1.176 24 C -0.085 4.085 25 C -0.170 4.170 26 C 0.114 3.886 27 F -0.112 7.112 28 C -0.113 4.113 29 C -0.126 4.126 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.252 0.748 44 H 0.178 0.822 45 H 0.126 0.874 46 H 0.252 0.748 47 H 0.170 0.830 48 H 0.184 0.816 49 H 0.162 0.838 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.569 -1.337 -5.478 8.657 hybrid contribution 0.116 0.072 0.024 0.138 sum -6.453 -1.265 -5.454 8.543 Atomic orbital electron populations 1.26218 1.20390 1.04942 1.05351 0.76226 0.64932 0.63172 0.57092 1.26252 1.06523 1.19035 1.05331 1.26225 1.06556 1.08570 1.15630 1.37481 0.99163 1.00370 1.05050 1.21565 1.01112 1.00151 0.96286 1.16519 0.98941 0.95222 0.90032 1.21385 0.97080 0.94137 0.99894 1.21212 0.98904 1.00139 0.90955 1.19879 0.99778 0.96335 0.94108 1.20203 0.91342 0.90645 0.93635 1.45822 1.22845 1.38499 1.28623 1.18231 0.85839 0.80824 0.80581 1.90846 1.28270 1.69474 1.56221 1.20055 0.98096 1.01674 0.99248 1.21190 0.89211 0.95397 0.98235 1.19575 0.96188 0.97480 0.96521 1.24698 0.94026 0.95350 1.04764 1.86446 1.38890 1.31748 1.79950 0.85419 0.78916 0.76797 0.79660 1.19213 1.17956 1.17569 1.21338 0.96402 0.97987 0.92779 1.21317 0.93318 0.99283 1.03108 1.18112 0.83062 0.96660 0.90768 1.91560 1.47246 1.94634 1.77798 1.21207 0.96320 0.94567 0.99235 1.21378 0.99855 1.00373 0.90950 0.91211 0.89296 0.91139 0.91368 0.89287 0.91258 0.91113 0.89303 0.91290 0.84679 0.83544 0.90231 0.90446 0.74804 0.82191 0.87431 0.74753 0.82951 0.81569 0.83773 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.54 8.65 113.37 0.98 3.52 16 2 Si 1.20 -7.49 14.26 68.60 0.98 -6.52 16 3 C -0.46 2.26 8.65 113.37 0.98 3.24 16 4 C -0.46 2.47 8.65 113.37 0.98 3.45 16 5 C -0.39 -1.32 12.14 74.32 0.90 -0.42 16 6 C -0.19 -1.41 13.24 30.02 0.40 -1.01 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 8 C -0.11 -0.28 9.75 22.52 0.22 -0.06 16 9 C -0.09 0.02 9.68 22.23 0.22 0.24 16 10 C -0.10 0.01 5.25 -19.81 -0.10 -0.10 16 11 C 0.16 0.21 5.79 85.63 0.50 0.71 16 12 N -0.71 -0.97 5.50 -469.85 -2.58 -3.55 16 13 C 0.56 4.73 7.77 86.74 0.67 5.40 16 14 O -0.57 -9.89 15.34 -3.92 -0.06 -9.95 16 15 C -0.19 -1.01 5.88 -20.05 -0.12 -1.13 16 16 C -0.02 0.02 9.09 22.53 0.20 0.22 16 17 C -0.10 0.19 5.42 -19.90 -0.11 0.08 16 18 C -0.08 0.52 2.81 71.23 0.20 0.72 16 19 O -0.56 3.13 12.73 -148.98 -1.90 1.24 16 20 Si 0.97 -5.73 25.06 68.60 1.72 -4.01 16 21 H -0.27 0.57 7.11 99.48 0.71 1.28 16 22 H -0.26 1.37 7.11 99.48 0.71 2.07 16 23 H -0.25 1.29 7.11 99.48 0.71 2.00 16 24 C -0.07 0.11 8.66 22.31 0.19 0.30 16 25 C -0.15 -0.18 10.01 22.28 0.22 0.04 16 26 C 0.13 1.00 7.29 22.67 0.17 1.16 16 27 F -0.13 -1.83 15.55 44.97 0.70 -1.13 16 28 C -0.09 -0.03 9.68 22.23 0.22 0.19 16 29 C -0.11 -0.32 9.75 22.52 0.22 -0.10 16 30 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 31 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 32 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 35 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 37 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 38 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 40 H 0.15 -0.55 8.06 -2.91 -0.02 -0.57 16 41 H 0.08 0.18 8.08 -2.39 -0.02 0.16 16 42 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 43 H 0.41 -1.53 6.50 -92.71 -0.60 -2.13 16 44 H 0.16 -0.93 6.40 -2.91 -0.02 -0.95 16 45 H 0.11 -1.24 7.96 -2.39 -0.02 -1.26 16 46 H 0.40 -5.61 8.74 -74.06 -0.65 -6.25 16 47 H 0.15 -0.85 4.86 -2.91 -0.01 -0.87 16 48 H 0.17 -0.52 8.06 -2.91 -0.02 -0.55 16 49 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 50 H 0.13 0.14 8.06 -2.91 -0.02 0.12 16 Total: 0.00 -24.81 436.25 6.16 -18.65 By element: Atomic # 1 Polarization: -11.52 SS G_CDS: 0.49 Total: -11.03 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.82 Total: 16.30 kcal Atomic # 7 Polarization: -0.97 SS G_CDS: -2.58 Total: -3.55 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.96 Total: -8.71 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.70 Total: -1.13 kcal Atomic # 14 Polarization: -13.23 SS G_CDS: 2.70 Total: -10.53 kcal Total: -24.81 6.16 -18.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12335834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.761 kcal (2) G-P(sol) polarization free energy of solvation -24.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds