Wall clock time and date at job start Sun Mar 7 2021 03:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85260 * 179.69770 * 8 7 6 10 10 C 1.38344 * 120.14274 * 0.57747 * 9 8 7 11 11 C 1.50696 * 119.85947 * 179.74403 * 10 9 8 12 12 N 1.46504 * 109.47229 * 269.97989 * 11 10 9 13 13 C 1.34768 * 120.00207 * 179.97438 * 12 11 10 14 14 O 1.21285 * 120.00216 * 359.97438 * 13 12 11 15 15 C 1.50707 * 120.00105 * 179.97438 * 13 12 11 16 16 C 1.50696 * 109.47123 * 179.97438 * 15 13 12 17 17 C 1.38236 * 120.00264 * 269.72374 * 16 15 13 18 18 C 1.38233 * 119.99933 * 179.76529 * 17 16 15 19 19 C 1.38234 * 120.00005 * 0.51212 * 18 17 16 20 20 C 1.50706 * 120.00162 * 179.72136 * 19 18 17 21 21 O 1.42897 * 109.47033 * 245.02502 * 20 19 18 22 22 Si 1.86299 * 109.46901 * 5.02266 * 20 19 18 23 23 H 1.48500 * 109.47263 * 59.99780 * 22 20 19 24 24 H 1.48496 * 109.47276 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46994 * 300.00016 * 22 20 19 26 26 C 1.38238 * 120.00082 * 359.74635 * 19 18 17 27 27 C 1.38234 * 119.99814 * 90.00115 * 16 15 13 28 28 C 1.38343 * 120.28621 * 359.71918 * 10 9 8 29 29 C 1.37976 * 120.14217 * 359.97438 * 28 10 9 30 30 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 31 31 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 32 32 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 35 35 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 36 36 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 37 37 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 38 38 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 39 39 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 40 40 H 1.07996 * 119.92784 * 180.30119 * 9 8 7 41 41 H 1.09000 * 109.47137 * 29.97502 * 11 10 9 42 42 H 1.08993 * 109.47410 * 149.98084 * 11 10 9 43 43 H 0.97005 * 119.99341 * 359.97438 * 12 11 10 44 44 H 1.08992 * 109.46909 * 300.00086 * 15 13 12 45 45 H 1.09006 * 109.47140 * 59.99955 * 15 13 12 46 46 H 1.08000 * 119.99920 * 0.02562 * 17 16 15 47 47 H 1.08000 * 119.99912 * 180.23513 * 18 17 16 48 48 H 1.08995 * 109.47351 * 125.02193 * 20 19 18 49 49 H 0.96694 * 114.00640 * 59.99973 * 21 20 19 50 50 H 1.07997 * 119.99832 * 179.97438 * 26 19 18 51 51 H 1.07999 * 120.00023 * 0.02562 * 27 16 15 52 52 H 1.07999 * 119.93194 * 179.97438 * 28 10 9 53 53 H 1.08003 * 120.07184 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5743 -3.9385 4.6858 10 6 4.2888 -3.4292 5.9400 11 6 4.7921 -4.1389 7.1704 12 7 3.7962 -5.1191 7.6105 13 6 4.0323 -5.8773 8.6994 14 8 5.0694 -5.7485 9.3148 15 6 3.0075 -6.8852 9.1524 16 6 3.5114 -7.5959 10.3820 17 6 4.2506 -8.7571 10.2550 18 6 4.7169 -9.4064 11.3828 19 6 4.4351 -8.9002 12.6379 20 6 4.9382 -9.6114 13.8677 21 8 3.8280 -10.1027 14.6214 22 14 6.0237 -11.0377 13.3597 23 1 7.1774 -10.5272 12.5763 24 1 6.5189 -11.7390 14.5713 25 1 5.2396 -11.9842 12.5263 26 6 3.6914 -7.7419 12.7651 27 6 3.2296 -7.0898 11.6371 28 6 3.5437 -2.2708 6.0695 29 6 3.0808 -1.6155 4.9469 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5739 1.7566 0.0005 34 1 2.1205 2.2703 -0.8900 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9058 -1.5212 37 1 2.1207 -0.3643 -2.4111 38 1 3.5740 -0.8777 -1.5214 39 1 4.3313 -3.6977 2.5772 40 1 5.1565 -4.8432 4.5914 41 1 5.7267 -4.6497 6.9384 42 1 4.9625 -3.4124 7.9648 43 1 2.9668 -5.2224 7.1180 44 1 2.0734 -6.3741 9.3849 45 1 2.8363 -7.6116 8.3578 46 1 4.4673 -9.1548 9.2746 47 1 5.2976 -10.3115 11.2835 48 1 5.5137 -8.9167 14.4793 49 1 3.2703 -10.7278 14.1384 50 1 3.4709 -7.3467 13.7456 51 1 2.6480 -6.1852 11.7364 52 1 3.3239 -1.8784 7.0514 53 1 2.4989 -0.7115 5.0494 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_12335836.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:06:34 Heat of formation + Delta-G solvation = -21.162896 kcal Electronic energy + Delta-G solvation = -29152.980624 eV Core-core repulsion = 25078.533077 eV Total energy + Delta-G solvation = -4074.447547 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 381.167 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.26869 -40.57800 -39.92888 -37.66004 -36.33781 -34.41819 -34.00139 -32.11206 -31.95766 -31.68177 -29.79396 -29.45325 -28.29350 -28.28908 -27.30434 -25.49343 -23.85598 -23.77738 -23.01580 -22.19440 -21.32294 -19.54809 -18.57698 -18.28096 -17.51590 -17.09715 -16.81054 -16.49862 -16.34075 -16.12182 -16.07146 -15.98231 -15.56861 -15.06633 -14.83940 -14.60338 -14.54459 -14.40399 -14.23640 -14.15572 -14.11555 -13.92579 -13.84608 -13.83887 -13.27012 -13.17268 -13.16679 -13.02727 -12.99203 -12.85146 -12.61272 -12.38577 -12.24526 -12.21524 -12.20079 -12.00612 -11.96908 -11.62308 -11.55507 -11.10544 -10.79796 -10.65004 -10.41335 -10.19104 -10.07164 -9.88352 -9.65768 -9.49912 -0.30735 0.23587 0.28554 0.44143 1.15740 1.37307 1.41666 1.50497 1.55862 1.61584 1.69554 1.88224 2.12393 2.38341 2.43621 2.46978 2.79593 2.99474 3.50649 3.51748 3.64485 3.75349 3.77083 3.82261 3.89628 3.90518 4.03700 4.04444 4.25310 4.29805 4.35400 4.44730 4.58006 4.59035 4.61794 4.63272 4.71682 4.82344 4.82955 4.83340 4.86172 4.89012 4.89169 4.91895 4.96026 5.02205 5.07920 5.17998 5.33287 5.36544 5.37901 5.43156 5.53093 5.58011 5.58191 5.67475 5.67915 5.79642 6.01233 6.49987 6.56229 6.69345 7.21633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.200 2.800 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.392 4.392 6 C -0.191 4.191 7 C -0.010 4.010 8 C -0.108 4.108 9 C -0.096 4.096 10 C -0.098 4.098 11 C 0.165 3.835 12 N -0.716 5.716 13 C 0.514 3.486 14 O -0.578 6.578 15 C -0.098 4.098 16 C -0.072 4.072 17 C -0.112 4.112 18 C -0.137 4.137 19 C -0.128 4.128 20 C -0.080 4.080 21 O -0.552 6.552 22 Si 0.983 3.017 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.247 1.247 26 C -0.102 4.102 27 C -0.114 4.114 28 C -0.096 4.096 29 C -0.108 4.108 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.416 0.584 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.138 0.862 47 H 0.128 0.872 48 H 0.119 0.881 49 H 0.389 0.611 50 H 0.130 0.870 51 H 0.135 0.865 52 H 0.146 0.854 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 0.843 -6.055 7.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.381 2.619 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.423 4.423 6 C -0.191 4.191 7 C -0.010 4.010 8 C -0.126 4.126 9 C -0.114 4.114 10 C -0.098 4.098 11 C 0.042 3.958 12 N -0.369 5.369 13 C 0.302 3.698 14 O -0.457 6.457 15 C -0.137 4.137 16 C -0.073 4.073 17 C -0.130 4.130 18 C -0.155 4.155 19 C -0.128 4.128 20 C -0.190 4.190 21 O -0.359 6.359 22 Si 0.808 3.192 23 H -0.190 1.190 24 H -0.199 1.199 25 H -0.171 1.171 26 C -0.120 4.120 27 C -0.132 4.132 28 C -0.114 4.114 29 C -0.126 4.126 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.253 0.747 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.155 0.845 47 H 0.145 0.855 48 H 0.137 0.863 49 H 0.238 0.762 50 H 0.148 0.852 51 H 0.153 0.847 52 H 0.164 0.836 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.385 0.555 -5.280 6.296 hybrid contribution -0.410 0.002 -0.125 0.428 sum -3.794 0.557 -5.405 6.627 Atomic orbital electron populations 1.26212 1.20326 1.04936 1.05392 0.76305 0.65042 0.63338 0.57175 1.26235 1.06536 1.18888 1.05376 1.26217 1.06571 1.08551 1.15599 1.37483 0.99255 1.00449 1.05074 1.21596 1.01070 1.00121 0.96319 1.16524 0.99145 0.95304 0.90065 1.21387 0.97130 0.94175 0.99933 1.21208 0.98994 1.00163 0.91038 1.19940 0.99385 0.96236 0.94287 1.20089 0.91637 0.90901 0.93177 1.45983 1.22623 1.38828 1.29474 1.21017 0.87727 0.81459 0.79592 1.90755 1.29235 1.69455 1.56241 1.20753 0.98326 0.97636 0.96957 1.19569 0.98125 0.95120 0.94454 1.21185 0.97189 0.95465 0.99131 1.21184 1.00928 1.00665 0.92684 1.20417 1.00171 0.97280 0.94931 1.25001 0.94975 1.05347 0.93672 1.86478 1.41456 1.65452 1.42480 0.85210 0.78292 0.76948 0.78788 1.18968 1.19880 1.17065 1.21126 0.97029 0.94649 0.99237 1.21279 1.00105 0.99824 0.92036 1.21210 0.96440 0.94598 0.99161 1.21388 0.99872 1.00369 0.90997 0.91184 0.89241 0.91177 0.91332 0.89237 0.91217 0.91134 0.89248 0.91258 0.84866 0.83619 0.90920 0.90937 0.74736 0.85178 0.85101 0.84454 0.85473 0.86348 0.76220 0.85201 0.84748 0.83628 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.43 8.65 113.37 0.98 3.41 16 2 Si 1.20 -7.13 14.26 68.60 0.98 -6.16 16 3 C -0.46 2.24 8.65 113.37 0.98 3.22 16 4 C -0.46 2.38 8.65 113.37 0.98 3.36 16 5 C -0.39 -1.45 12.14 74.32 0.90 -0.55 16 6 C -0.19 -1.45 13.24 30.02 0.40 -1.05 16 7 C -0.01 -0.06 5.72 -21.41 -0.12 -0.18 16 8 C -0.11 -0.27 9.75 22.52 0.22 -0.05 16 9 C -0.10 0.08 9.68 22.23 0.22 0.29 16 10 C -0.10 0.12 5.25 -19.82 -0.10 0.02 16 11 C 0.17 -0.15 5.79 85.63 0.50 0.35 16 12 N -0.72 2.26 5.55 -466.79 -2.59 -0.33 16 13 C 0.51 0.80 7.82 87.66 0.69 1.48 16 14 O -0.58 -6.81 16.03 -3.04 -0.05 -6.86 16 15 C -0.10 0.43 5.83 29.10 0.17 0.60 16 16 C -0.07 -0.14 4.37 -19.87 -0.09 -0.23 16 17 C -0.11 -0.30 9.70 22.27 0.22 -0.08 16 18 C -0.14 -0.49 8.67 22.27 0.19 -0.29 16 19 C -0.13 -0.50 5.35 -19.86 -0.11 -0.60 16 20 C -0.08 -0.14 2.80 71.24 0.20 0.05 16 21 O -0.55 -1.27 12.83 -148.98 -1.91 -3.18 16 22 Si 0.98 1.15 25.14 68.60 1.72 2.87 16 23 H -0.27 -0.92 7.11 99.48 0.71 -0.21 16 24 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 25 H -0.25 -0.03 7.04 99.48 0.70 0.67 16 26 C -0.10 -0.43 9.69 22.27 0.22 -0.22 16 27 C -0.11 -0.34 9.70 22.27 0.22 -0.13 16 28 C -0.10 0.07 9.68 22.23 0.22 0.29 16 29 C -0.11 -0.27 9.75 22.52 0.22 -0.05 16 30 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 32 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 35 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 37 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 38 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 39 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 40 H 0.15 -0.63 8.06 -2.91 -0.02 -0.66 16 41 H 0.07 0.06 8.08 -2.39 -0.02 0.04 16 42 H 0.07 0.06 8.08 -2.39 -0.02 0.04 16 43 H 0.42 -3.43 8.46 -92.70 -0.78 -4.21 16 44 H 0.13 -1.20 8.09 -2.39 -0.02 -1.22 16 45 H 0.13 -1.24 8.08 -2.38 -0.02 -1.26 16 46 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 47 H 0.13 0.12 4.87 -2.91 -0.01 0.11 16 48 H 0.12 0.12 7.96 -2.39 -0.02 0.10 16 49 H 0.39 -1.71 8.70 -74.06 -0.64 -2.36 16 50 H 0.13 0.35 8.06 -2.91 -0.02 0.33 16 51 H 0.13 -0.06 8.06 -2.91 -0.02 -0.09 16 52 H 0.15 -0.62 8.06 -2.91 -0.02 -0.64 16 53 H 0.13 0.09 8.06 -2.91 -0.02 0.06 16 Total: 0.00 -23.16 456.38 5.48 -17.68 By element: Atomic # 1 Polarization: -13.91 SS G_CDS: 0.24 Total: -13.67 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 7.08 Total: 9.64 kcal Atomic # 7 Polarization: 2.26 SS G_CDS: -2.59 Total: -0.33 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.96 Total: -10.04 kcal Atomic # 14 Polarization: -5.99 SS G_CDS: 2.70 Total: -3.29 kcal Total: -23.16 5.48 -17.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12335836.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.480 kcal (2) G-P(sol) polarization free energy of solvation -23.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds