Wall clock time and date at job start Sun Mar 7 2021 03:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85260 * 179.69770 * 8 7 6 10 10 C 1.38344 * 120.14274 * 0.57747 * 9 8 7 11 11 C 1.50696 * 119.85912 * 179.70020 * 10 9 8 12 12 N 1.46499 * 109.46983 * 270.02300 * 11 10 9 13 13 C 1.34775 * 119.99992 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00109 * 359.97438 * 13 12 11 15 15 C 1.47581 * 120.00198 * 180.02562 * 13 12 11 16 16 C 1.40210 * 119.83150 * 359.97438 * 15 13 12 17 17 C 1.36230 * 120.37990 * 180.02562 * 16 15 13 18 18 C 1.39873 * 119.95912 * 0.02562 * 17 16 15 19 19 C 1.40929 * 120.16829 * 359.97438 * 18 17 16 20 20 C 1.38649 * 119.49236 * 359.73094 * 19 18 17 21 21 N 1.37824 * 107.12642 * 180.02562 * 19 18 17 22 22 C 1.36561 * 109.86679 * 359.97438 * 21 19 18 23 23 C 1.34461 * 109.98194 * 0.02562 * 22 21 19 24 24 C 1.50698 * 126.48294 * 180.02562 * 23 22 21 25 25 O 1.42904 * 109.46679 * 104.97848 * 24 23 22 26 26 Si 1.86301 * 109.47182 * 344.98057 * 24 23 22 27 27 H 1.48495 * 109.47189 * 59.99490 * 26 24 23 28 28 H 1.48500 * 109.47267 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.46882 * 299.99500 * 26 24 23 30 30 C 1.38343 * 120.28621 * 359.71918 * 10 9 8 31 31 C 1.37976 * 120.14217 * 359.97438 * 30 10 9 32 32 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 33 33 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 34 34 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 37 37 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 38 38 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 39 39 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 40 40 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 41 41 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 42 42 H 1.07996 * 119.92784 * 180.30119 * 9 8 7 43 43 H 1.09001 * 109.47458 * 30.01914 * 11 10 9 44 44 H 1.08999 * 109.47593 * 150.02082 * 11 10 9 45 45 H 0.97000 * 120.00064 * 359.97438 * 12 11 10 46 46 H 1.08004 * 119.80678 * 0.02562 * 16 15 13 47 47 H 1.08002 * 120.02064 * 179.97438 * 17 16 15 48 48 H 1.07992 * 120.16736 * 180.28882 * 20 19 18 49 49 H 0.97001 * 125.06951 * 180.02562 * 21 19 18 50 50 H 1.08000 * 125.01592 * 179.97438 * 22 21 19 51 51 H 1.08997 * 109.47492 * 224.97249 * 24 23 22 52 52 H 0.96706 * 113.99890 * 299.99837 * 25 24 23 53 53 H 1.07999 * 119.93194 * 179.97438 * 30 10 9 54 54 H 1.08003 * 120.07184 * 179.97438 * 31 30 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5743 -3.9385 4.6858 10 6 4.2888 -3.4292 5.9400 11 6 4.7913 -4.1395 7.1704 12 7 3.7950 -5.1197 7.6094 13 6 4.0303 -5.8784 8.6982 14 8 5.0697 -5.7496 9.3158 15 6 3.0270 -6.8663 9.1401 16 6 1.8299 -7.0124 8.4250 17 6 0.8958 -7.9204 8.8233 18 6 1.1288 -8.7129 9.9521 19 6 2.3284 -8.5751 10.6788 20 6 3.2763 -7.6527 10.2628 21 7 2.2763 -9.4738 11.7224 22 6 1.0996 -10.1656 11.6807 23 6 0.3613 -9.7539 10.6351 24 6 -0.9999 -10.2672 10.2419 25 8 -1.9934 -9.3039 10.5985 26 14 -1.3403 -11.8687 11.1309 27 1 -1.3026 -11.6385 12.5974 28 1 -2.6819 -12.3742 10.7439 29 1 -0.3078 -12.8697 10.7602 30 6 3.5437 -2.2708 6.0695 31 6 3.0808 -1.6155 4.9469 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.5739 1.7566 0.0005 36 1 2.1205 2.2703 -0.8900 37 1 2.1206 2.2703 0.8900 38 1 2.1207 -1.9058 -1.5212 39 1 2.1207 -0.3643 -2.4111 40 1 3.5740 -0.8777 -1.5214 41 1 4.3313 -3.6977 2.5772 42 1 5.1565 -4.8432 4.5914 43 1 5.7260 -4.6502 6.9389 44 1 4.9613 -3.4133 7.9653 45 1 2.9660 -5.2228 7.1164 46 1 1.6473 -6.4014 7.5533 47 1 -0.0246 -8.0278 8.2684 48 1 4.2013 -7.5413 10.8089 49 1 2.9714 -9.5962 12.3878 50 1 0.8057 -10.9313 12.3835 51 1 -1.0276 -10.4361 9.1655 52 1 -2.0260 -9.1041 11.5442 53 1 3.3239 -1.8784 7.0514 54 1 2.4989 -0.7115 5.0494 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_12335838.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:06:51 Heat of formation + Delta-G solvation = 17.416098 kcal Electronic energy + Delta-G solvation = -32518.933807 eV Core-core repulsion = 28124.280979 eV Total energy + Delta-G solvation = -4394.652828 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 406.163 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.47287 -41.10508 -40.25758 -37.91726 -37.45436 -36.43271 -34.40967 -33.25634 -32.10420 -31.88226 -30.72842 -30.45551 -29.45257 -28.28405 -28.28068 -27.45480 -26.40855 -24.54190 -23.76983 -23.65320 -22.84755 -21.51322 -20.80458 -19.54058 -19.46499 -18.60470 -17.83404 -17.15039 -16.98484 -16.83546 -16.47255 -16.16062 -16.00512 -15.89782 -15.81520 -15.49873 -15.12433 -14.87857 -14.78672 -14.57238 -14.53950 -14.40998 -14.25759 -14.14481 -14.11042 -13.89771 -13.83273 -13.78713 -13.16261 -13.15806 -13.10488 -12.98321 -12.65316 -12.64034 -12.40741 -12.37851 -12.23370 -12.20847 -12.02558 -11.99385 -11.69664 -11.61303 -11.23466 -10.79635 -10.79167 -10.64056 -10.27757 -10.26569 -10.06756 -9.53031 -9.37986 -8.80341 -0.33926 -0.30274 0.29531 0.36770 1.26604 1.36643 1.38377 1.51871 1.54672 1.61050 1.70530 1.89007 1.93041 2.00955 2.19431 2.39371 2.46407 2.47878 2.86246 2.98996 3.47656 3.60767 3.64459 3.75222 3.76456 3.83167 3.86231 3.90921 3.91676 4.11728 4.26528 4.29125 4.30658 4.47190 4.50028 4.59394 4.60756 4.64060 4.81124 4.83096 4.83914 4.84217 4.87049 4.89925 4.90010 4.92754 4.96976 4.98453 5.17544 5.21128 5.23726 5.38564 5.41372 5.43722 5.49552 5.58858 5.61224 5.68399 5.68733 5.80216 5.97082 6.40122 6.50431 6.57247 6.83885 7.07394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.200 2.800 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.108 4.108 9 C -0.095 4.095 10 C -0.100 4.100 11 C 0.164 3.836 12 N -0.709 5.709 13 C 0.563 3.437 14 O -0.580 6.580 15 C -0.135 4.135 16 C -0.109 4.109 17 C -0.081 4.081 18 C -0.079 4.079 19 C 0.067 3.933 20 C -0.066 4.066 21 N -0.578 5.578 22 C 0.079 3.921 23 C -0.227 4.227 24 C -0.047 4.047 25 O -0.558 6.558 26 Si 0.987 3.013 27 H -0.239 1.239 28 H -0.277 1.277 29 H -0.259 1.259 30 C -0.095 4.095 31 C -0.108 4.108 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.413 0.587 46 H 0.148 0.852 47 H 0.142 0.858 48 H 0.130 0.870 49 H 0.434 0.566 50 H 0.203 0.797 51 H 0.112 0.888 52 H 0.386 0.614 53 H 0.146 0.854 54 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 -1.143 -1.292 3.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.382 2.618 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.126 4.126 9 C -0.113 4.113 10 C -0.101 4.101 11 C 0.042 3.958 12 N -0.361 5.361 13 C 0.352 3.648 14 O -0.461 6.461 15 C -0.140 4.140 16 C -0.128 4.128 17 C -0.099 4.099 18 C -0.084 4.084 19 C -0.040 4.040 20 C -0.087 4.087 21 N -0.181 5.181 22 C -0.050 4.050 23 C -0.235 4.235 24 C -0.157 4.157 25 O -0.365 6.365 26 Si 0.810 3.190 27 H -0.162 1.162 28 H -0.203 1.203 29 H -0.183 1.183 30 C -0.113 4.113 31 C -0.126 4.126 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.251 0.749 46 H 0.166 0.834 47 H 0.160 0.840 48 H 0.148 0.852 49 H 0.274 0.726 50 H 0.220 0.780 51 H 0.130 0.870 52 H 0.235 0.765 53 H 0.164 0.836 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.720 -1.920 -0.828 3.431 hybrid contribution 0.579 0.264 0.738 0.975 sum -2.141 -1.656 -0.090 2.708 Atomic orbital electron populations 1.26218 1.20386 1.04919 1.05383 0.76303 0.65001 0.63365 0.57164 1.26229 1.06546 1.18839 1.05379 1.26216 1.06580 1.08540 1.15594 1.37491 0.99220 1.00443 1.05070 1.21584 1.01082 1.00118 0.96303 1.16524 0.99046 0.95262 0.90067 1.21385 0.97127 0.94160 0.99906 1.21217 0.98969 1.00114 0.91024 1.19919 0.99629 0.96303 0.94208 1.20188 0.91423 0.90721 0.93501 1.45859 1.22754 1.38570 1.28916 1.18344 0.85835 0.80543 0.80033 1.90773 1.28601 1.70066 1.56669 1.19439 0.96216 0.99738 0.98572 1.20886 0.92298 0.99425 1.00233 1.20416 0.99747 0.94548 0.95197 1.19527 0.93793 0.98377 0.96688 1.18137 0.97077 0.96244 0.92523 1.20114 0.98128 0.94058 0.96397 1.41776 1.18646 1.32151 1.25496 1.22267 0.85630 0.97802 0.99304 1.20901 0.99516 1.03095 0.99940 1.24403 0.83592 1.01354 1.06364 1.86486 1.55728 1.63094 1.31170 0.85214 0.79567 0.74532 0.79701 1.16199 1.20261 1.18310 1.21218 0.96320 0.94568 0.99238 1.21386 0.99854 1.00393 0.90957 0.91200 0.89233 0.91211 0.91306 0.89223 0.91217 0.91158 0.89238 0.91238 0.84779 0.83588 0.90320 0.90346 0.74891 0.83445 0.84027 0.85241 0.72610 0.78032 0.86987 0.76473 0.83612 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.12 8.65 113.37 0.98 3.11 16 2 Si 1.20 -6.44 14.26 68.60 0.98 -5.46 16 3 C -0.46 2.03 8.65 113.37 0.98 3.01 16 4 C -0.46 2.13 8.65 113.37 0.98 3.11 16 5 C -0.39 -1.72 12.14 74.32 0.90 -0.81 16 6 C -0.19 -1.60 13.24 30.02 0.40 -1.20 16 7 C -0.01 -0.06 5.72 -21.41 -0.12 -0.18 16 8 C -0.11 -0.38 9.75 22.52 0.22 -0.16 16 9 C -0.09 -0.06 9.68 22.23 0.22 0.16 16 10 C -0.10 -0.04 5.25 -19.82 -0.10 -0.14 16 11 C 0.16 0.20 5.79 85.63 0.50 0.69 16 12 N -0.71 -1.01 5.50 -469.96 -2.58 -3.60 16 13 C 0.56 4.21 7.76 86.71 0.67 4.88 16 14 O -0.58 -8.69 16.31 -4.00 -0.07 -8.76 16 15 C -0.14 -0.73 5.87 -20.07 -0.12 -0.85 16 16 C -0.11 -0.16 9.46 22.28 0.21 0.05 16 17 C -0.08 -0.20 10.03 22.20 0.22 0.02 16 18 C -0.08 -0.31 6.35 -20.14 -0.13 -0.44 16 19 C 0.07 0.25 7.26 38.96 0.28 0.53 16 20 C -0.07 -0.38 9.61 22.63 0.22 -0.17 16 21 N -0.58 1.24 6.06 -187.71 -1.14 0.10 16 22 C 0.08 -0.28 10.43 83.09 0.87 0.58 16 23 C -0.23 -0.03 5.57 -18.64 -0.10 -0.13 16 24 C -0.05 0.08 3.06 71.24 0.22 0.30 16 25 O -0.56 -0.09 12.88 -148.98 -1.92 -2.01 16 26 Si 0.99 -4.00 26.08 68.60 1.79 -2.21 16 27 H -0.24 1.54 7.03 99.48 0.70 2.24 16 28 H -0.28 -0.14 7.11 99.48 0.71 0.57 16 29 H -0.26 0.68 7.11 99.48 0.71 1.39 16 30 C -0.10 -0.06 9.68 22.23 0.22 0.15 16 31 C -0.11 -0.39 9.75 22.52 0.22 -0.17 16 32 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 33 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 34 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 35 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 36 H 0.09 -0.59 7.96 -2.39 -0.02 -0.61 16 37 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 38 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 39 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 40 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 41 H 0.13 0.21 8.06 -2.91 -0.02 0.18 16 42 H 0.15 -0.42 8.06 -2.91 -0.02 -0.45 16 43 H 0.08 0.16 8.08 -2.39 -0.02 0.14 16 44 H 0.08 0.16 8.08 -2.39 -0.02 0.15 16 45 H 0.41 -1.19 6.45 -92.71 -0.60 -1.78 16 46 H 0.15 -0.62 6.36 -2.91 -0.02 -0.64 16 47 H 0.14 -0.03 8.06 -2.91 -0.02 -0.05 16 48 H 0.13 0.80 7.62 -2.91 -0.02 0.78 16 49 H 0.43 -3.32 8.96 -92.71 -0.83 -4.15 16 50 H 0.20 -2.09 6.29 -2.91 -0.02 -2.11 16 51 H 0.11 -0.22 7.96 -2.39 -0.02 -0.24 16 52 H 0.39 -2.49 8.70 -74.05 -0.64 -3.14 16 53 H 0.15 -0.40 8.06 -2.91 -0.02 -0.43 16 54 H 0.13 0.22 8.06 -2.91 -0.02 0.19 16 Total: 0.00 -24.82 465.19 4.42 -20.40 By element: Atomic # 1 Polarization: -10.44 SS G_CDS: -0.37 Total: -10.81 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 7.72 Total: 12.34 kcal Atomic # 7 Polarization: 0.22 SS G_CDS: -3.72 Total: -3.50 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.98 Total: -10.77 kcal Atomic # 14 Polarization: -10.44 SS G_CDS: 2.77 Total: -7.67 kcal Total: -24.82 4.42 -20.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12335838.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.816 kcal (2) G-P(sol) polarization free energy of solvation -24.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds