Wall clock time and date at job start Sun Mar 7 2021 03:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86295 * 109.47169 * 2 1 4 4 C 1.86297 * 109.46851 * 240.00227 * 2 1 3 5 5 C 1.89999 * 109.47359 * 120.00224 * 2 1 3 6 6 C 3.07403 * 109.47257 * 120.00255 * 2 1 3 7 7 C 4.50604 * 109.47222 * 120.00193 * 2 1 3 8 8 C 1.39529 * 120.13925 * 283.11534 * 7 6 5 9 9 C 1.37982 * 119.85401 * 180.02562 * 8 7 6 10 10 C 1.38339 * 120.14009 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.85390 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.47062 * 90.00124 * 11 10 9 13 13 C 1.34780 * 120.00314 * 179.97438 * 12 11 10 14 14 O 1.21548 * 119.99508 * 0.02562 * 13 12 11 15 15 C 1.47843 * 120.00130 * 180.02562 * 13 12 11 16 16 C 1.39557 * 120.14133 * 179.97438 * 15 13 12 17 17 C 1.37983 * 119.87465 * 180.02562 * 16 15 13 18 18 C 1.50702 * 119.91933 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47057 * 299.97469 * 18 17 16 20 20 Si 1.86303 * 109.46966 * 179.97438 * 18 17 16 21 21 H 1.48501 * 109.46844 * 299.99402 * 20 18 17 22 22 H 1.48497 * 109.47268 * 59.99805 * 20 18 17 23 23 H 1.48501 * 109.47108 * 179.97438 * 20 18 17 24 24 C 1.38318 * 120.15635 * 359.97438 * 17 16 15 25 25 C 1.38465 * 120.28303 * 0.02562 * 24 17 16 26 26 Br 1.89102 * 119.93548 * 179.97438 * 25 24 17 27 27 C 1.38028 * 120.12477 * 0.02562 * 25 24 17 28 28 C 1.38340 * 120.28845 * 0.25440 * 10 9 8 29 29 C 1.37978 * 120.14005 * 359.45022 * 28 10 9 30 30 H 1.08998 * 109.46889 * 299.99742 * 1 2 3 31 31 H 1.08999 * 109.47276 * 59.99508 * 1 2 3 32 32 H 1.08997 * 109.47311 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47173 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47423 * 300.00402 * 3 2 1 35 35 H 1.09006 * 109.47348 * 60.00256 * 3 2 1 36 36 H 1.09001 * 109.47343 * 299.99434 * 4 2 1 37 37 H 1.08997 * 109.47678 * 60.00276 * 4 2 1 38 38 H 1.09004 * 109.47315 * 180.02562 * 4 2 1 39 39 H 1.08003 * 120.07672 * 0.02562 * 8 7 6 40 40 H 1.08005 * 119.92608 * 180.02562 * 9 8 7 41 41 H 1.09000 * 109.47378 * 330.00162 * 11 10 9 42 42 H 1.08995 * 109.47255 * 210.00215 * 11 10 9 43 43 H 0.97005 * 120.00021 * 0.02562 * 12 11 10 44 44 H 1.08001 * 120.06366 * 0.02562 * 16 15 13 45 45 H 1.09004 * 109.47510 * 59.97591 * 18 17 16 46 46 H 0.96700 * 113.99974 * 180.02562 * 19 18 17 47 47 H 1.07997 * 119.85636 * 180.27647 * 24 17 16 48 48 H 1.08000 * 120.07859 * 179.97438 * 27 25 24 49 49 H 1.08002 * 119.93061 * 179.70126 * 28 10 9 50 50 H 1.08001 * 120.06978 * 180.24880 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4964 -0.8957 1.5513 6 6 2.8877 -1.4492 2.5099 7 6 3.3651 -2.1243 3.6791 8 6 2.8211 -1.8292 4.9296 9 6 3.2858 -2.4828 6.0524 10 6 4.2892 -3.4285 5.9402 11 6 4.7923 -4.1381 7.1708 12 7 4.0056 -5.3544 7.3891 13 6 4.2789 -6.1545 8.4387 14 8 5.1779 -5.8666 9.2044 15 6 3.4852 -7.3823 8.6587 16 6 3.7660 -8.2132 9.7442 17 6 3.0222 -9.3581 9.9440 18 6 3.3242 -10.2557 11.1162 19 8 4.6689 -10.7295 11.0193 20 14 2.1530 -11.7046 11.1068 21 1 0.7556 -11.2121 11.2076 22 1 2.3192 -12.4672 9.8435 23 1 2.4510 -12.5894 12.2615 24 6 1.9993 -9.6832 9.0715 25 6 1.7151 -8.8635 7.9923 26 35 0.3149 -9.3177 6.8052 27 6 2.4525 -7.7160 7.7808 28 6 4.8368 -3.7215 4.7040 29 6 4.3767 -3.0793 3.5727 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.5740 1.7564 -0.0005 34 1 2.1206 2.2703 -0.8899 35 1 2.1207 2.2703 0.8900 36 1 2.1206 -1.9059 -1.5212 37 1 2.1206 -0.3643 -2.4112 38 1 3.5739 -0.8786 -1.5210 39 1 2.0379 -1.0908 5.0186 40 1 2.8652 -2.2556 7.0209 41 1 4.6932 -3.4813 8.0350 42 1 5.8407 -4.4031 7.0343 43 1 3.2883 -5.5843 6.7778 44 1 4.5641 -7.9606 10.4266 45 1 3.2021 -9.6959 12.0435 46 1 4.9327 -11.3148 11.7424 47 1 1.4172 -10.5780 9.2350 48 1 2.2304 -7.0774 6.9387 49 1 5.6232 -4.4573 4.6237 50 1 4.8022 -3.3119 2.6077 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_12335870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:32:59 Heat of formation + Delta-G solvation = -15.488249 kcal Electronic energy + Delta-G solvation = -29773.477167 eV Core-core repulsion = 25514.995307 eV Total energy + Delta-G solvation = -4258.481860 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 445.062 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.54827 -40.57926 -39.71877 -37.73052 -36.37755 -34.45638 -33.65994 -33.24485 -32.10336 -31.37734 -30.47855 -29.64700 -28.48420 -28.48041 -27.70252 -26.98340 -24.93251 -23.77347 -22.87951 -22.66419 -21.41487 -19.51989 -19.10393 -18.63072 -17.76134 -17.60283 -16.81413 -16.65839 -16.36291 -16.07871 -15.95112 -15.89545 -15.57822 -15.04571 -14.82901 -14.63974 -14.56477 -14.43993 -14.31207 -14.30244 -14.15917 -14.05967 -13.96227 -13.70370 -13.59980 -13.37813 -13.37236 -13.16081 -12.79176 -12.67537 -12.45006 -12.37321 -12.17462 -12.15221 -12.06403 -11.98233 -11.86278 -11.61120 -11.49869 -11.12251 -10.93744 -10.74728 -10.58681 -10.30874 -10.11962 -10.05497 -9.89025 -9.48941 -0.48928 -0.26954 -0.14894 0.30030 0.40614 0.97919 1.30916 1.35403 1.37812 1.49326 1.57996 1.60384 1.78464 1.98910 2.31945 2.32463 2.39340 2.50904 3.04460 3.09379 3.35511 3.50575 3.55324 3.75025 3.75474 3.84071 3.88200 3.90784 3.98692 4.10385 4.26141 4.27959 4.28941 4.43321 4.59972 4.60482 4.64718 4.64830 4.68923 4.69310 4.69516 4.71333 4.74726 4.84407 4.94544 4.95147 5.09366 5.18551 5.23104 5.38547 5.40616 5.40690 5.43243 5.48231 5.48503 5.80120 6.33494 6.45212 6.68439 7.07443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.142 2.858 3 C -0.452 4.452 4 C -0.452 4.452 5 C -0.388 4.388 6 C -0.145 4.145 7 C 0.014 3.986 8 C -0.099 4.099 9 C -0.097 4.097 10 C -0.106 4.106 11 C 0.161 3.839 12 N -0.722 5.722 13 C 0.563 3.437 14 O -0.526 6.526 15 C -0.128 4.128 16 C -0.013 4.013 17 C -0.074 4.074 18 C -0.081 4.081 19 O -0.542 6.542 20 Si 0.934 3.066 21 H -0.245 1.245 22 H -0.243 1.243 23 H -0.249 1.249 24 C -0.070 4.070 25 C -0.093 4.093 26 Br -0.034 7.034 27 C -0.054 4.054 28 C -0.097 4.097 29 C -0.099 4.099 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.402 0.598 44 H 0.150 0.850 45 H 0.085 0.915 46 H 0.384 0.616 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.131 0.869 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 0.467 -1.437 2.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.328 2.672 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.422 4.422 6 C -0.145 4.145 7 C 0.014 3.986 8 C -0.117 4.117 9 C -0.116 4.116 10 C -0.107 4.107 11 C 0.039 3.961 12 N -0.375 5.375 13 C 0.350 3.650 14 O -0.402 6.402 15 C -0.132 4.132 16 C -0.032 4.032 17 C -0.075 4.075 18 C -0.192 4.192 19 O -0.348 6.348 20 Si 0.755 3.245 21 H -0.169 1.169 22 H -0.166 1.166 23 H -0.172 1.172 24 C -0.090 4.090 25 C -0.172 4.172 26 Br 0.052 6.948 27 C -0.074 4.074 28 C -0.115 4.115 29 C -0.116 4.116 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.238 0.762 44 H 0.168 0.832 45 H 0.103 0.897 46 H 0.232 0.768 47 H 0.153 0.847 48 H 0.156 0.844 49 H 0.149 0.851 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.990 0.120 -1.770 3.477 hybrid contribution 0.336 -0.107 0.659 0.747 sum -2.655 0.013 -1.111 2.878 Atomic orbital electron populations 1.26114 1.19968 1.04971 1.04964 0.77031 0.66042 0.64724 0.59405 1.26118 1.06726 1.18228 1.04962 1.26115 1.06710 1.08435 1.14766 1.36090 1.00333 1.01124 1.04699 1.20975 0.99615 0.98762 0.95113 1.16255 0.96498 0.96033 0.89793 1.21257 0.99694 0.99596 0.91112 1.21053 0.96042 0.95628 0.98830 1.19940 0.97854 0.98345 0.94538 1.20254 0.95585 0.85162 0.95139 1.45978 1.37679 1.24675 1.29159 1.18080 0.83357 0.82758 0.80848 1.90827 1.30977 1.73208 1.45236 1.19921 0.98271 0.96996 0.97983 1.21261 0.96371 0.90688 0.94851 1.19236 0.96103 0.95758 0.96402 1.24694 0.92214 1.04173 0.98078 1.86504 1.27017 1.69076 1.52225 0.85904 0.78571 0.77754 0.82225 1.16860 1.16562 1.17248 1.21170 0.96838 0.98582 0.92433 1.21565 0.98840 0.98814 0.98009 1.96832 1.44730 1.93265 1.59960 1.21273 0.93115 0.94890 0.98167 1.21058 0.99650 0.99375 0.91457 1.21259 0.95858 0.95375 0.99156 0.90907 0.90359 0.90901 0.90891 0.90366 0.90898 0.90903 0.90358 0.90897 0.85269 0.85088 0.89931 0.89930 0.76225 0.83240 0.89715 0.76758 0.84679 0.84355 0.85077 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.99 8.65 101.05 0.87 1.87 16 2 Si 1.14 -3.10 14.26 -169.99 -2.42 -5.52 16 3 C -0.45 0.96 8.65 101.05 0.87 1.83 16 4 C -0.45 0.99 8.65 101.05 0.87 1.86 16 5 C -0.39 -0.59 12.14 29.55 0.36 -0.24 16 6 C -0.14 -0.46 13.24 -38.84 -0.51 -0.97 16 7 C 0.01 0.03 5.72 -107.01 -0.61 -0.58 16 8 C -0.10 -0.09 9.75 -39.19 -0.38 -0.48 16 9 C -0.10 0.03 9.68 -39.64 -0.38 -0.36 16 10 C -0.11 0.04 5.25 -104.55 -0.55 -0.51 16 11 C 0.16 -0.04 5.79 -5.19 -0.03 -0.07 16 12 N -0.72 0.14 5.50 -62.43 -0.34 -0.20 16 13 C 0.56 1.31 7.77 -12.33 -0.10 1.22 16 14 O -0.53 -3.06 16.35 5.32 0.09 -2.97 16 15 C -0.13 -0.17 5.87 -104.97 -0.62 -0.79 16 16 C -0.01 -0.02 9.15 -39.18 -0.36 -0.38 16 17 C -0.07 -0.06 5.42 -104.69 -0.57 -0.63 16 18 C -0.08 0.08 2.81 36.01 0.10 0.18 16 19 O -0.54 0.21 12.74 -35.23 -0.45 -0.24 16 20 Si 0.93 -1.12 25.06 -169.99 -4.26 -5.39 16 21 H -0.25 0.20 7.11 56.52 0.40 0.60 16 22 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 23 H -0.25 0.29 7.11 56.52 0.40 0.70 16 24 C -0.07 -0.05 8.41 -39.47 -0.33 -0.39 16 25 C -0.09 -0.06 6.22 -39.57 -0.25 -0.31 16 26 Br -0.03 -0.02 33.69 -68.01 -2.29 -2.31 16 27 C -0.05 0.00 9.28 -39.16 -0.36 -0.36 16 28 C -0.10 0.02 9.68 -39.64 -0.38 -0.36 16 29 C -0.10 -0.10 9.75 -39.20 -0.38 -0.48 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.08 -0.22 7.96 -51.93 -0.41 -0.64 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 37 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 39 H 0.13 -0.01 8.06 -52.48 -0.42 -0.44 16 40 H 0.13 -0.24 8.06 -52.48 -0.42 -0.66 16 41 H 0.08 0.00 8.08 -51.93 -0.42 -0.42 16 42 H 0.08 0.01 8.08 -51.93 -0.42 -0.41 16 43 H 0.40 -0.83 6.50 -40.82 -0.27 -1.09 16 44 H 0.15 0.31 7.65 -52.49 -0.40 -0.10 16 45 H 0.09 -0.25 7.96 -51.93 -0.41 -0.66 16 46 H 0.38 -1.85 8.74 45.56 0.40 -1.45 16 47 H 0.14 -0.03 4.86 -52.49 -0.26 -0.29 16 48 H 0.14 -0.31 6.41 -52.49 -0.34 -0.65 16 49 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 50 H 0.13 0.00 8.06 -52.49 -0.42 -0.43 16 LS Contribution 453.01 15.07 6.83 6.83 Total: 0.00 -8.59 453.01 -11.91 -20.50 By element: Atomic # 1 Polarization: -4.45 SS G_CDS: -6.32 Total: -10.77 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.73 Total: 0.07 kcal Atomic # 7 Polarization: 0.14 SS G_CDS: -0.34 Total: -0.20 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -0.36 Total: -3.21 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: -6.68 Total: -10.91 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.29 Total: -2.31 kcal Total LS contribution 6.83 Total: 6.83 kcal Total: -8.59 -11.91 -20.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12335870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.014 kcal (2) G-P(sol) polarization free energy of solvation -8.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds