Wall clock time and date at job start Sun Mar 7 2021 03:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86295 * 109.47169 * 2 1 4 4 C 1.86297 * 109.46851 * 240.00227 * 2 1 3 5 5 C 1.89999 * 109.47359 * 120.00224 * 2 1 3 6 6 C 3.07403 * 109.47257 * 120.00255 * 2 1 3 7 7 C 4.50604 * 109.47222 * 120.00193 * 2 1 3 8 8 C 1.39529 * 120.13925 * 283.11534 * 7 6 5 9 9 C 1.37982 * 119.85401 * 180.02562 * 8 7 6 10 10 C 1.38339 * 120.14009 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.85390 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.47062 * 90.00124 * 11 10 9 13 13 C 1.34780 * 120.00314 * 179.97438 * 12 11 10 14 14 O 1.21548 * 119.99508 * 0.02562 * 13 12 11 15 15 C 1.47843 * 120.00130 * 180.02562 * 13 12 11 16 16 C 1.39557 * 120.14133 * 179.97438 * 15 13 12 17 17 C 1.37983 * 119.87465 * 180.02562 * 16 15 13 18 18 C 1.50702 * 119.91933 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47057 * 299.97469 * 18 17 16 20 20 Si 1.86303 * 109.46966 * 179.97438 * 18 17 16 21 21 H 1.48501 * 109.46844 * 299.99402 * 20 18 17 22 22 H 1.48497 * 109.47268 * 59.99805 * 20 18 17 23 23 H 1.48501 * 109.47108 * 179.97438 * 20 18 17 24 24 C 1.38318 * 120.15635 * 359.97438 * 17 16 15 25 25 C 1.38465 * 120.28303 * 0.02562 * 24 17 16 26 26 Br 1.89102 * 119.93548 * 179.97438 * 25 24 17 27 27 C 1.38028 * 120.12477 * 0.02562 * 25 24 17 28 28 C 1.38340 * 120.28845 * 0.25440 * 10 9 8 29 29 C 1.37978 * 120.14005 * 359.45022 * 28 10 9 30 30 H 1.08998 * 109.46889 * 299.99742 * 1 2 3 31 31 H 1.08999 * 109.47276 * 59.99508 * 1 2 3 32 32 H 1.08997 * 109.47311 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47173 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47423 * 300.00402 * 3 2 1 35 35 H 1.09006 * 109.47348 * 60.00256 * 3 2 1 36 36 H 1.09001 * 109.47343 * 299.99434 * 4 2 1 37 37 H 1.08997 * 109.47678 * 60.00276 * 4 2 1 38 38 H 1.09004 * 109.47315 * 180.02562 * 4 2 1 39 39 H 1.08003 * 120.07672 * 0.02562 * 8 7 6 40 40 H 1.08005 * 119.92608 * 180.02562 * 9 8 7 41 41 H 1.09000 * 109.47378 * 330.00162 * 11 10 9 42 42 H 1.08995 * 109.47255 * 210.00215 * 11 10 9 43 43 H 0.97005 * 120.00021 * 0.02562 * 12 11 10 44 44 H 1.08001 * 120.06366 * 0.02562 * 16 15 13 45 45 H 1.09004 * 109.47510 * 59.97591 * 18 17 16 46 46 H 0.96700 * 113.99974 * 180.02562 * 19 18 17 47 47 H 1.07997 * 119.85636 * 180.27647 * 24 17 16 48 48 H 1.08000 * 120.07859 * 179.97438 * 27 25 24 49 49 H 1.08002 * 119.93061 * 179.70126 * 28 10 9 50 50 H 1.08001 * 120.06978 * 180.24880 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4964 -0.8957 1.5513 6 6 2.8877 -1.4492 2.5099 7 6 3.3651 -2.1243 3.6791 8 6 2.8211 -1.8292 4.9296 9 6 3.2858 -2.4828 6.0524 10 6 4.2892 -3.4285 5.9402 11 6 4.7923 -4.1381 7.1708 12 7 4.0056 -5.3544 7.3891 13 6 4.2789 -6.1545 8.4387 14 8 5.1779 -5.8666 9.2044 15 6 3.4852 -7.3823 8.6587 16 6 3.7660 -8.2132 9.7442 17 6 3.0222 -9.3581 9.9440 18 6 3.3242 -10.2557 11.1162 19 8 4.6689 -10.7295 11.0193 20 14 2.1530 -11.7046 11.1068 21 1 0.7556 -11.2121 11.2076 22 1 2.3192 -12.4672 9.8435 23 1 2.4510 -12.5894 12.2615 24 6 1.9993 -9.6832 9.0715 25 6 1.7151 -8.8635 7.9923 26 35 0.3149 -9.3177 6.8052 27 6 2.4525 -7.7160 7.7808 28 6 4.8368 -3.7215 4.7040 29 6 4.3767 -3.0793 3.5727 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.5740 1.7564 -0.0005 34 1 2.1206 2.2703 -0.8899 35 1 2.1207 2.2703 0.8900 36 1 2.1206 -1.9059 -1.5212 37 1 2.1206 -0.3643 -2.4112 38 1 3.5739 -0.8786 -1.5210 39 1 2.0379 -1.0908 5.0186 40 1 2.8652 -2.2556 7.0209 41 1 4.6932 -3.4813 8.0350 42 1 5.8407 -4.4031 7.0343 43 1 3.2883 -5.5843 6.7778 44 1 4.5641 -7.9606 10.4266 45 1 3.2021 -9.6959 12.0435 46 1 4.9327 -11.3148 11.7424 47 1 1.4172 -10.5780 9.2350 48 1 2.2304 -7.0774 6.9387 49 1 5.6232 -4.4573 4.6237 50 1 4.8022 -3.3119 2.6077 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_12335870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:32:58 Heat of formation + Delta-G solvation = -7.640988 kcal Electronic energy + Delta-G solvation = -29773.136884 eV Core-core repulsion = 25514.995307 eV Total energy + Delta-G solvation = -4258.141577 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 445.062 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.64465 -40.59684 -39.81818 -37.66662 -36.49159 -34.54459 -33.69912 -33.29211 -32.11130 -31.43935 -30.52061 -29.46447 -28.29155 -28.29060 -27.74212 -26.95722 -25.00029 -23.77962 -22.91049 -22.69707 -21.51250 -19.54951 -19.15094 -18.54560 -17.79516 -17.67687 -16.87428 -16.65440 -16.42706 -16.05882 -16.02100 -15.93491 -15.56914 -15.04535 -14.91050 -14.62977 -14.54669 -14.44108 -14.31419 -14.16800 -14.12177 -13.89517 -13.84134 -13.73450 -13.63354 -13.17064 -13.16824 -12.99125 -12.82133 -12.66008 -12.44481 -12.39333 -12.22259 -12.12147 -12.00475 -11.96204 -11.84890 -11.62115 -11.57346 -11.26916 -10.80811 -10.64870 -10.56598 -10.37198 -10.13264 -10.07057 -9.92645 -9.54220 -0.56128 -0.31571 -0.18522 0.28759 0.36156 1.07485 1.37448 1.40671 1.44773 1.50960 1.53065 1.69660 1.86159 1.99187 2.38469 2.39685 2.43017 2.47024 2.97272 3.16555 3.33906 3.48586 3.65061 3.73555 3.75650 3.82241 3.85333 3.90619 3.96897 4.15098 4.25731 4.27082 4.29681 4.50573 4.58628 4.59919 4.71151 4.81567 4.83129 4.83245 4.86112 4.89063 4.89180 4.90642 4.91920 4.96202 5.05573 5.14123 5.18994 5.35478 5.37925 5.42474 5.58032 5.67624 5.67809 5.79401 6.28670 6.56355 6.77107 6.96163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.200 2.800 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.101 4.101 11 C 0.164 3.836 12 N -0.708 5.708 13 C 0.564 3.436 14 O -0.566 6.566 15 C -0.135 4.135 16 C -0.023 4.023 17 C -0.080 4.080 18 C -0.083 4.083 19 O -0.561 6.561 20 Si 0.962 3.038 21 H -0.250 1.250 22 H -0.265 1.265 23 H -0.246 1.246 24 C -0.076 4.076 25 C -0.099 4.099 26 Br -0.032 7.032 27 C -0.047 4.047 28 C -0.095 4.095 29 C -0.109 4.109 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.412 0.588 44 H 0.141 0.859 45 H 0.105 0.895 46 H 0.402 0.598 47 H 0.142 0.858 48 H 0.160 0.840 49 H 0.146 0.854 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 0.520 -1.818 3.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.382 2.618 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.102 4.102 11 C 0.042 3.958 12 N -0.361 5.361 13 C 0.352 3.648 14 O -0.446 6.446 15 C -0.139 4.139 16 C -0.042 4.042 17 C -0.081 4.081 18 C -0.193 4.193 19 O -0.371 6.371 20 Si 0.785 3.215 21 H -0.174 1.174 22 H -0.190 1.190 23 H -0.170 1.170 24 C -0.096 4.096 25 C -0.179 4.179 26 Br 0.054 6.946 27 C -0.067 4.067 28 C -0.113 4.113 29 C -0.127 4.127 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.250 0.750 44 H 0.159 0.841 45 H 0.123 0.877 46 H 0.253 0.747 47 H 0.160 0.840 48 H 0.177 0.823 49 H 0.164 0.836 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.652 0.159 -2.137 4.234 hybrid contribution 0.527 -0.126 0.737 0.915 sum -3.125 0.033 -1.400 3.425 Atomic orbital electron populations 1.26215 1.20389 1.04909 1.05394 0.76300 0.65004 0.63361 0.57170 1.26231 1.06560 1.18835 1.05373 1.26219 1.06598 1.08517 1.15609 1.37487 0.99300 1.00388 1.05066 1.21596 1.01050 1.00139 0.96317 1.16525 0.97345 0.96785 0.90199 1.21393 1.00066 1.00069 0.91111 1.21230 0.95742 0.95109 0.99148 1.19915 0.97719 0.98208 0.94325 1.20227 0.95472 0.85005 0.95118 1.45890 1.37527 1.24177 1.28477 1.18221 0.82852 0.83029 0.80745 1.90805 1.32795 1.74227 1.46788 1.19882 0.98762 0.96769 0.98451 1.21288 0.96548 0.91292 0.95111 1.19447 0.95866 0.95745 0.97002 1.24771 0.92068 1.04238 0.98184 1.86458 1.27268 1.69741 1.53609 0.85509 0.77977 0.77026 0.80981 1.17384 1.18974 1.16963 1.21340 0.96929 0.98865 0.92481 1.21670 0.99036 0.99072 0.98118 1.96833 1.44637 1.93292 1.59834 1.21424 0.92201 0.94819 0.98247 1.21227 0.99703 0.99285 0.91102 1.21386 0.95920 0.95513 0.99851 0.91181 0.89238 0.91224 0.91290 0.89231 0.91224 0.91199 0.89243 0.91216 0.84797 0.83447 0.89942 0.90100 0.74996 0.84116 0.87723 0.74703 0.84028 0.82284 0.83577 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.23 8.65 113.37 0.98 3.21 16 2 Si 1.20 -6.71 14.26 68.60 0.98 -5.73 16 3 C -0.46 2.12 8.65 113.37 0.98 3.10 16 4 C -0.46 2.21 8.65 113.37 0.98 3.19 16 5 C -0.39 -1.59 12.14 74.32 0.90 -0.68 16 6 C -0.19 -1.51 13.24 30.01 0.40 -1.11 16 7 C -0.01 -0.05 5.72 -21.41 -0.12 -0.17 16 8 C -0.11 -0.30 9.75 22.52 0.22 -0.08 16 9 C -0.09 0.05 9.68 22.23 0.22 0.27 16 10 C -0.10 0.09 5.25 -19.82 -0.10 -0.01 16 11 C 0.16 -0.09 5.79 85.63 0.50 0.40 16 12 N -0.71 0.39 5.50 -469.72 -2.58 -2.19 16 13 C 0.56 2.92 7.77 86.79 0.67 3.60 16 14 O -0.57 -7.24 16.35 -3.87 -0.06 -7.31 16 15 C -0.13 -0.42 5.87 -20.09 -0.12 -0.53 16 16 C -0.02 -0.10 9.15 22.53 0.21 0.11 16 17 C -0.08 -0.16 5.42 -19.91 -0.11 -0.27 16 18 C -0.08 0.17 2.81 71.24 0.20 0.37 16 19 O -0.56 0.40 12.74 -148.98 -1.90 -1.50 16 20 Si 0.96 -2.45 25.06 68.60 1.72 -0.74 16 21 H -0.25 0.47 7.11 99.48 0.71 1.18 16 22 H -0.27 -0.28 7.11 99.48 0.71 0.43 16 23 H -0.25 0.76 7.11 99.48 0.71 1.46 16 24 C -0.08 -0.13 8.41 22.34 0.19 0.06 16 25 C -0.10 -0.12 6.22 22.27 0.14 0.02 16 26 Br -0.03 -0.02 33.69 -20.37 -0.69 -0.71 16 27 C -0.05 0.01 9.28 22.55 0.21 0.22 16 28 C -0.09 0.03 9.68 22.23 0.22 0.24 16 29 C -0.11 -0.32 9.75 22.52 0.22 -0.10 16 30 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 31 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 32 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 33 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 34 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 35 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 36 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 37 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 38 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.13 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.15 -0.63 8.06 -2.91 -0.02 -0.65 16 41 H 0.08 0.00 8.08 -2.39 -0.02 -0.02 16 42 H 0.08 0.03 8.08 -2.39 -0.02 0.01 16 43 H 0.41 -1.98 6.50 -92.70 -0.60 -2.58 16 44 H 0.14 0.79 7.65 -2.91 -0.02 0.77 16 45 H 0.11 -0.67 7.96 -2.39 -0.02 -0.69 16 46 H 0.40 -3.96 8.74 -74.06 -0.65 -4.60 16 47 H 0.14 -0.04 4.86 -2.91 -0.01 -0.05 16 48 H 0.16 -0.86 6.41 -2.91 -0.02 -0.87 16 49 H 0.15 -0.55 8.06 -2.91 -0.02 -0.57 16 50 H 0.13 0.15 8.06 -2.91 -0.02 0.13 16 Total: 0.00 -20.61 453.01 4.73 -15.88 By element: Atomic # 1 Polarization: -10.04 SS G_CDS: 0.49 Total: -9.55 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.77 Total: 11.84 kcal Atomic # 7 Polarization: 0.39 SS G_CDS: -2.58 Total: -2.19 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -1.96 Total: -8.80 kcal Atomic # 14 Polarization: -9.17 SS G_CDS: 2.70 Total: -6.47 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -20.61 4.73 -15.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12335870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.240 kcal (2) G-P(sol) polarization free energy of solvation -20.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds