Wall clock time and date at job start Sun Mar 7 2021 03:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86303 * 109.47053 * 2 1 4 4 C 1.86302 * 109.46990 * 240.00369 * 2 1 3 5 5 C 1.89995 * 109.47494 * 119.99817 * 2 1 3 6 6 C 3.07399 * 109.47353 * 119.99922 * 2 1 3 7 7 C 4.50594 * 109.47326 * 119.99953 * 2 1 3 8 8 C 1.39542 * 120.14040 * 335.51876 * 7 6 5 9 9 C 1.37975 * 119.85551 * 180.02562 * 8 7 6 10 10 C 1.38340 * 120.14451 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.86095 * 179.97438 * 10 9 8 12 12 N 1.46493 * 109.47082 * 89.99446 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21691 * 119.99708 * 359.72416 * 13 12 11 15 15 C 1.46423 * 120.00205 * 179.72867 * 13 12 11 16 16 C 1.34804 * 120.00194 * 179.97438 * 15 13 12 17 17 C 1.47211 * 119.99990 * 179.97438 * 16 15 13 18 18 C 1.39832 * 120.17192 * 359.72755 * 17 16 15 19 19 C 1.37886 * 119.82759 * 179.80676 * 18 17 16 20 20 C 1.38400 * 120.16963 * 0.44506 * 19 18 17 21 21 C 1.50709 * 119.82762 * 179.75987 * 20 19 18 22 22 O 1.42892 * 109.47449 * 245.02182 * 21 20 19 23 23 Si 1.86303 * 109.46842 * 5.02750 * 21 20 19 24 24 H 1.48494 * 109.47471 * 59.99679 * 23 21 20 25 25 H 1.48497 * 109.46869 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46814 * 299.99304 * 23 21 20 27 27 C 1.38392 * 120.34625 * 359.78757 * 20 19 18 28 28 C 1.37894 * 120.17057 * 359.97438 * 27 20 19 29 29 C 1.38348 * 120.28571 * 0.25043 * 10 9 8 30 30 C 1.37979 * 120.13814 * 359.44934 * 29 10 9 31 31 H 1.09001 * 109.47287 * 299.99568 * 1 2 3 32 32 H 1.08994 * 109.47543 * 59.99959 * 1 2 3 33 33 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47176 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46904 * 300.00337 * 3 2 1 36 36 H 1.09003 * 109.47255 * 59.99560 * 3 2 1 37 37 H 1.09004 * 109.46663 * 299.99269 * 4 2 1 38 38 H 1.08994 * 109.47245 * 59.99489 * 4 2 1 39 39 H 1.09002 * 109.47120 * 179.97438 * 4 2 1 40 40 H 1.07998 * 120.06973 * 359.97438 * 8 7 6 41 41 H 1.07994 * 119.92648 * 179.97438 * 9 8 7 42 42 H 1.09007 * 109.46606 * 329.99696 * 11 10 9 43 43 H 1.09006 * 109.47204 * 210.00154 * 11 10 9 44 44 H 0.97000 * 120.00740 * 359.72841 * 12 11 10 45 45 H 1.08005 * 119.99890 * 359.97438 * 15 13 12 46 46 H 1.07997 * 120.00188 * 359.97438 * 16 15 13 47 47 H 1.08005 * 120.08338 * 359.97438 * 18 17 16 48 48 H 1.08007 * 119.91703 * 180.21017 * 19 18 17 49 49 H 1.09004 * 109.46770 * 125.02152 * 21 20 19 50 50 H 0.96706 * 113.99965 * 60.00057 * 22 21 20 51 51 H 1.08009 * 119.91598 * 179.97438 * 27 20 19 52 52 H 1.08006 * 120.08478 * 179.97438 * 28 27 20 53 53 H 1.08000 * 119.93092 * 179.70945 * 29 10 9 54 54 H 1.08004 * 120.06741 * 180.24886 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4964 -0.8956 1.5513 6 6 2.8878 -1.4490 2.5099 7 6 3.3651 -2.1241 3.6791 8 6 2.4662 -2.7551 4.5399 9 6 2.9326 -3.4034 5.6650 10 6 4.2880 -3.4281 5.9409 11 6 4.7903 -4.1375 7.1720 12 7 5.0791 -5.5362 6.8459 13 6 5.5428 -6.3685 7.7992 14 8 5.7262 -5.9569 8.9296 15 6 5.8259 -7.7680 7.4748 16 6 6.2901 -8.6004 8.4282 17 6 6.5741 -10.0075 8.1021 18 6 6.3583 -10.4860 6.8060 19 6 6.6306 -11.8043 6.5075 20 6 7.1075 -12.6556 7.4889 21 6 7.3974 -14.0965 7.1554 22 8 6.5063 -14.9428 7.8844 23 14 7.1591 -14.3709 5.3281 24 1 8.0852 -13.4914 4.5706 25 1 7.4453 -15.7904 4.9994 26 1 5.7573 -14.0495 4.9580 27 6 7.3191 -12.1908 8.7752 28 6 7.0562 -10.8739 9.0882 29 6 5.1839 -2.7996 5.0946 30 6 4.7310 -2.1531 3.9628 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.5740 1.7565 -0.0005 35 1 2.1206 2.2703 -0.8900 36 1 2.1206 2.2704 0.8900 37 1 2.1207 -1.9059 -1.5211 38 1 2.1206 -0.3644 -2.4111 39 1 3.5740 -0.8778 -1.5215 40 1 1.4078 -2.7354 4.3262 41 1 2.2379 -3.8918 6.3322 42 1 4.0292 -4.0958 7.9512 43 1 5.6996 -3.6516 7.5258 44 1 4.9326 -5.8645 5.9449 45 1 5.6627 -8.1335 6.4716 46 1 6.4536 -8.2349 9.4312 47 1 5.9819 -9.8239 6.0402 48 1 6.4676 -12.1746 5.5060 49 1 8.4263 -14.3323 7.4271 50 1 5.5712 -14.7879 7.6922 51 1 7.6911 -12.8613 9.5358 52 1 7.2215 -10.5127 10.0926 53 1 6.2403 -2.8185 5.3180 54 1 5.4318 -1.6663 3.3008 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_12360594.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:33:37 Heat of formation + Delta-G solvation = -0.550525 kcal Electronic energy + Delta-G solvation = -30003.534310 eV Core-core repulsion = 25801.754442 eV Total energy + Delta-G solvation = -4201.779868 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 393.167 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.11640 -40.61775 -40.14955 -37.78707 -36.42271 -35.07973 -34.38130 -32.27305 -32.11799 -31.81425 -31.05211 -29.46634 -28.29390 -28.29184 -27.95478 -26.61942 -24.21540 -23.83730 -23.78389 -22.82493 -21.98101 -20.56069 -19.55149 -18.92991 -18.19471 -17.56613 -16.92223 -16.81718 -16.71015 -16.31118 -16.16379 -16.00435 -15.86116 -15.65261 -15.20680 -14.92206 -14.73741 -14.55608 -14.42959 -14.35895 -14.16327 -14.12140 -13.93522 -13.87541 -13.84323 -13.69499 -13.31854 -13.17268 -13.16824 -13.03449 -12.99371 -12.64087 -12.39661 -12.26349 -12.21437 -12.17959 -12.04207 -12.00706 -11.62612 -11.55802 -11.36544 -11.20580 -10.80498 -10.65168 -10.41016 -10.24884 -10.08124 -9.99780 -9.53979 -9.26411 -0.57213 -0.31227 0.28004 0.37220 0.86816 1.17248 1.36978 1.45091 1.52077 1.54994 1.69310 1.91628 2.11634 2.20492 2.38083 2.45526 2.46758 2.79984 2.97641 3.47994 3.49649 3.60310 3.65816 3.75078 3.81167 3.82789 3.89887 3.91024 4.16156 4.18763 4.25290 4.29204 4.33260 4.44794 4.58137 4.59419 4.61516 4.81264 4.82919 4.82946 4.83077 4.85964 4.88865 4.89026 4.91722 4.95484 4.96349 5.07574 5.12195 5.18249 5.28473 5.37205 5.37309 5.42433 5.46940 5.57846 5.58138 5.67392 5.67653 5.78912 5.88824 6.46460 6.55825 6.68655 7.14031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.200 2.800 3 C -0.463 4.463 4 C -0.461 4.461 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.108 4.108 9 C -0.095 4.095 10 C -0.099 4.099 11 C 0.164 3.836 12 N -0.709 5.709 13 C 0.544 3.456 14 O -0.589 6.589 15 C -0.211 4.211 16 C -0.017 4.017 17 C -0.082 4.082 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.111 4.111 21 C -0.083 4.083 22 O -0.552 6.552 23 Si 0.981 3.019 24 H -0.256 1.256 25 H -0.278 1.278 26 H -0.249 1.249 27 C -0.102 4.102 28 C -0.100 4.100 29 C -0.095 4.095 30 C -0.108 4.108 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.416 0.584 45 H 0.160 0.840 46 H 0.126 0.874 47 H 0.152 0.848 48 H 0.136 0.864 49 H 0.124 0.876 50 H 0.389 0.611 51 H 0.137 0.863 52 H 0.140 0.860 53 H 0.146 0.854 54 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 0.244 -6.329 6.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.381 2.619 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.010 4.010 8 C -0.126 4.126 9 C -0.114 4.114 10 C -0.100 4.100 11 C 0.041 3.959 12 N -0.361 5.361 13 C 0.334 3.666 14 O -0.472 6.472 15 C -0.231 4.231 16 C -0.037 4.037 17 C -0.082 4.082 18 C -0.115 4.115 19 C -0.154 4.154 20 C -0.112 4.112 21 C -0.193 4.193 22 O -0.359 6.359 23 Si 0.806 3.194 24 H -0.180 1.180 25 H -0.204 1.204 26 H -0.172 1.172 27 C -0.120 4.120 28 C -0.118 4.118 29 C -0.114 4.114 30 C -0.126 4.126 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.253 0.747 45 H 0.177 0.823 46 H 0.144 0.856 47 H 0.170 0.830 48 H 0.153 0.847 49 H 0.142 0.858 50 H 0.238 0.762 51 H 0.154 0.846 52 H 0.158 0.842 53 H 0.164 0.836 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.182 0.135 -6.062 6.177 hybrid contribution -0.292 0.129 0.423 0.529 sum -1.474 0.264 -5.639 5.835 Atomic orbital electron populations 1.26217 1.20411 1.04943 1.05367 0.76307 0.65008 0.63358 0.57177 1.26233 1.06608 1.18842 1.05334 1.26213 1.06605 1.08502 1.15559 1.37494 0.99405 1.00307 1.05006 1.21590 1.01026 1.00180 0.96325 1.16522 0.94025 0.98353 0.92066 1.21389 0.99922 0.97095 0.94202 1.21211 0.95299 0.98187 0.96668 1.19929 0.93758 0.99763 0.96504 1.20143 1.01127 0.80626 0.94005 1.45845 1.66223 1.10071 1.13914 1.18708 0.76445 0.87211 0.84186 1.90823 1.54794 1.78727 1.22837 1.22967 1.06183 0.91804 1.02176 1.22383 0.90770 0.91116 0.99451 1.19114 1.01646 0.92911 0.94570 1.21602 0.98083 0.95747 0.96020 1.21197 1.00399 0.94320 0.99459 1.20625 0.99420 0.96574 0.94547 1.25081 0.98078 0.86960 1.09191 1.86500 1.20939 1.59839 1.68670 0.85226 0.81268 0.79262 0.73659 1.18023 1.20354 1.17233 1.21122 0.99065 0.95408 0.96407 1.21660 0.97099 0.93383 0.99662 1.21216 1.00705 0.96234 0.93219 1.21388 0.93999 0.99335 0.97893 0.91255 0.89235 0.91150 0.91208 0.89232 0.91314 0.91193 0.89230 0.91194 0.84814 0.83611 0.90616 0.90615 0.74738 0.82303 0.85622 0.83046 0.84658 0.85804 0.76184 0.84556 0.84216 0.83630 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.32 8.65 113.37 0.98 3.30 16 2 Si 1.20 -6.98 14.26 68.60 0.98 -6.00 16 3 C -0.46 2.20 8.65 113.37 0.98 3.18 16 4 C -0.46 2.36 8.65 113.37 0.98 3.34 16 5 C -0.39 -1.52 12.14 74.32 0.90 -0.62 16 6 C -0.19 -1.50 13.24 30.01 0.40 -1.10 16 7 C -0.01 -0.06 5.72 -21.41 -0.12 -0.18 16 8 C -0.11 -0.32 9.75 22.52 0.22 -0.10 16 9 C -0.10 0.02 9.68 22.23 0.22 0.23 16 10 C -0.10 0.05 5.25 -19.81 -0.10 -0.05 16 11 C 0.16 0.02 5.79 85.63 0.50 0.52 16 12 N -0.71 0.68 5.54 -471.08 -2.61 -1.93 16 13 C 0.54 2.35 7.74 86.37 0.67 3.02 16 14 O -0.59 -7.83 16.23 -4.32 -0.07 -7.90 16 15 C -0.21 0.15 9.41 23.61 0.22 0.37 16 16 C -0.02 -0.02 9.46 23.84 0.23 0.21 16 17 C -0.08 -0.01 5.87 -20.15 -0.12 -0.13 16 18 C -0.10 0.21 9.41 22.57 0.21 0.42 16 19 C -0.14 0.26 8.65 22.22 0.19 0.45 16 20 C -0.11 0.10 5.36 -19.79 -0.11 -0.01 16 21 C -0.08 0.19 2.80 71.24 0.20 0.39 16 22 O -0.55 0.31 12.83 -148.98 -1.91 -1.60 16 23 Si 0.98 -2.60 25.12 68.60 1.72 -0.87 16 24 H -0.26 0.43 7.11 99.48 0.71 1.13 16 25 H -0.28 -0.40 7.11 99.48 0.71 0.30 16 26 H -0.25 0.81 7.04 99.48 0.70 1.51 16 27 C -0.10 0.01 9.66 22.22 0.21 0.23 16 28 C -0.10 -0.01 9.80 22.57 0.22 0.21 16 29 C -0.10 0.01 9.68 22.23 0.22 0.23 16 30 C -0.11 -0.32 9.75 22.52 0.22 -0.10 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 33 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 34 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 35 H 0.09 -0.62 7.96 -2.39 -0.02 -0.63 16 36 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 37 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 38 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 39 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 40 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 41 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 42 H 0.08 0.11 8.08 -2.38 -0.02 0.09 16 43 H 0.08 0.11 8.08 -2.38 -0.02 0.09 16 44 H 0.42 -2.47 8.44 -92.71 -0.78 -3.25 16 45 H 0.16 -1.17 6.07 -2.91 -0.02 -1.18 16 46 H 0.13 0.43 7.52 -2.91 -0.02 0.41 16 47 H 0.15 -1.11 6.17 -2.91 -0.02 -1.13 16 48 H 0.14 -0.65 4.84 -2.91 -0.01 -0.67 16 49 H 0.12 -0.45 7.96 -2.38 -0.02 -0.47 16 50 H 0.39 -2.68 8.70 -74.05 -0.64 -3.33 16 51 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 52 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 53 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 54 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 Total: 0.00 -21.87 466.25 5.67 -16.20 By element: Atomic # 1 Polarization: -11.96 SS G_CDS: 0.25 Total: -11.72 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 7.31 Total: 13.82 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -2.61 Total: -1.93 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -1.98 Total: -9.51 kcal Atomic # 14 Polarization: -9.57 SS G_CDS: 2.70 Total: -6.87 kcal Total: -21.87 5.67 -16.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12360594.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.654 kcal (2) G-P(sol) polarization free energy of solvation -21.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds