Wall clock time and date at job start Sun Mar 7 2021 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21564 * 120.00279 * 0.02562 * 13 12 11 15 15 C 1.47703 * 119.99466 * 179.97438 * 13 12 11 16 16 C 1.39615 * 120.15478 * 0.02562 * 15 13 12 17 17 C 1.38115 * 119.85061 * 179.97438 * 16 15 13 18 18 F 1.35102 * 119.91568 * 180.02562 * 17 16 15 19 19 C 1.38608 * 120.16309 * 0.02562 * 17 16 15 20 20 C 1.50704 * 119.84198 * 179.97438 * 19 17 16 21 21 O 1.42900 * 109.46948 * 284.99413 * 20 19 17 22 22 Si 1.86299 * 109.47189 * 164.99561 * 20 19 17 23 23 H 1.48503 * 109.47055 * 299.99999 * 22 20 19 24 24 H 1.48499 * 109.47066 * 59.99799 * 22 20 19 25 25 H 1.48503 * 109.47218 * 180.02562 * 22 20 19 26 26 C 1.38231 * 120.31652 * 0.02562 * 19 17 16 27 27 C 1.38266 * 120.14626 * 359.70713 * 26 19 17 28 28 F 1.35099 * 120.08775 * 180.29877 * 27 26 19 29 29 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 30 30 C 1.37976 * 120.14217 * 0.02562 * 29 10 9 31 31 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 32 32 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 33 33 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 36 36 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 37 37 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 38 38 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 39 39 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 40 40 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 41 41 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 42 42 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 43 43 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 44 44 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 45 45 H 1.07999 * 120.07607 * 359.95045 * 16 15 13 46 46 H 1.09003 * 109.47144 * 44.99219 * 20 19 17 47 47 H 0.96701 * 113.99816 * 179.97438 * 21 20 19 48 48 H 1.07999 * 119.92514 * 179.97438 * 26 19 17 49 49 H 1.07999 * 119.93193 * 179.97438 * 29 10 9 50 50 H 1.08003 * 120.07184 * 179.97438 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0658 -5.7506 9.3162 15 6 3.0216 -6.8664 9.1403 16 6 1.8273 -7.0164 8.4329 17 6 0.8916 -7.9419 8.8519 18 9 -0.2643 -8.0884 8.1680 19 6 1.1356 -8.7206 9.9723 20 6 0.1093 -9.7278 10.4235 21 8 -0.9801 -9.0490 11.0516 22 14 0.8885 -10.9074 11.6368 23 1 2.0206 -11.6127 10.9841 24 1 1.3886 -10.1499 12.8121 25 1 -0.1226 -11.9002 12.0809 26 6 2.3152 -8.5770 10.6785 27 6 3.2632 -7.6584 10.2673 28 9 4.4183 -7.5233 10.9548 29 6 3.5437 -2.2708 6.0695 30 6 3.0807 -1.6156 4.9469 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.5739 1.7566 0.0005 35 1 2.1205 2.2703 -0.8900 36 1 2.1206 2.2703 0.8900 37 1 2.1207 -1.9058 -1.5212 38 1 2.1207 -0.3643 -2.4111 39 1 3.5740 -0.8777 -1.5214 40 1 4.3313 -3.6977 2.5772 41 1 5.1551 -4.8441 4.5914 42 1 5.7241 -4.6519 6.9391 43 1 4.9599 -3.4146 7.9655 44 1 2.9639 -5.2230 7.1154 45 1 1.6354 -6.4098 7.5602 46 1 -0.2579 -10.2837 9.5608 47 1 -1.6801 -9.6368 11.3673 48 1 2.4985 -9.1868 11.5508 49 1 3.3239 -1.8784 7.0514 50 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_12360598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:33:53 Heat of formation + Delta-G solvation = -95.841568 kcal Electronic energy + Delta-G solvation = -32917.411712 eV Core-core repulsion = 28056.355522 eV Total energy + Delta-G solvation = -4861.056189 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 403.133 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -50.16702 -50.11764 -41.47648 -40.50121 -39.77313 -37.65083 -36.50621 -34.57733 -33.51821 -32.11173 -31.51380 -31.42853 -29.46281 -28.36144 -28.28917 -28.28629 -26.88436 -24.47060 -23.78160 -23.77911 -22.84169 -21.90989 -19.83248 -19.54237 -18.80485 -18.64304 -18.46235 -17.60532 -17.24451 -17.03631 -16.76720 -16.53379 -16.36057 -16.26008 -15.99435 -15.87785 -15.67228 -15.55311 -15.29565 -14.70455 -14.55050 -14.45434 -14.28431 -14.15016 -14.10992 -13.91809 -13.84308 -13.83247 -13.80289 -13.58052 -13.16878 -13.16421 -13.08514 -12.98867 -12.65723 -12.40380 -12.38452 -12.21234 -12.15121 -12.00292 -11.91119 -11.61958 -11.35967 -10.80586 -10.66077 -10.64616 -10.44927 -10.32407 -10.07631 -9.86307 -9.54539 -0.85626 -0.36034 -0.32005 0.28805 1.02511 1.32197 1.37714 1.41969 1.48965 1.51153 1.69974 1.85696 1.90285 2.18326 2.37248 2.38793 2.47330 2.72025 2.80592 2.97396 3.04261 3.27367 3.43571 3.48695 3.69413 3.73582 3.75471 3.82360 3.90759 4.09411 4.25228 4.29075 4.29924 4.30270 4.47533 4.58399 4.61655 4.63787 4.70292 4.81494 4.83339 4.83659 4.86488 4.89359 4.89443 4.92157 4.96340 5.10156 5.18386 5.33436 5.37993 5.42297 5.58365 5.67896 5.68194 5.79299 6.22547 6.56540 6.71335 6.90201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.201 2.799 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.108 4.108 9 C -0.093 4.093 10 C -0.101 4.101 11 C 0.164 3.836 12 N -0.703 5.703 13 C 0.561 3.439 14 O -0.558 6.558 15 C -0.148 4.148 16 C -0.077 4.077 17 C 0.107 3.893 18 F -0.123 7.123 19 C -0.058 4.058 20 C -0.090 4.090 21 O -0.557 6.557 22 Si 0.972 3.028 23 H -0.252 1.252 24 H -0.261 1.261 25 H -0.242 1.242 26 C -0.140 4.140 27 C 0.140 3.860 28 F -0.123 7.123 29 C -0.094 4.094 30 C -0.109 4.109 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.415 0.585 45 H 0.181 0.819 46 H 0.105 0.895 47 H 0.405 0.595 48 H 0.163 0.837 49 H 0.147 0.853 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -1.006 -4.891 7.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.382 2.618 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.102 4.102 11 C 0.042 3.958 12 N -0.356 5.356 13 C 0.348 3.652 14 O -0.437 6.437 15 C -0.152 4.152 16 C -0.096 4.096 17 C 0.087 3.913 18 F -0.102 7.102 19 C -0.059 4.059 20 C -0.199 4.199 21 O -0.367 6.367 22 Si 0.794 3.206 23 H -0.176 1.176 24 H -0.186 1.186 25 H -0.165 1.165 26 C -0.159 4.159 27 C 0.120 3.880 28 F -0.102 7.102 29 C -0.113 4.113 30 C -0.127 4.127 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.166 0.834 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.253 0.747 45 H 0.198 0.802 46 H 0.122 0.878 47 H 0.256 0.744 48 H 0.180 0.820 49 H 0.165 0.835 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.657 -1.031 -3.894 5.440 hybrid contribution -0.558 -0.252 0.056 0.615 sum -4.216 -1.283 -3.837 5.843 Atomic orbital electron populations 1.26220 1.20407 1.04918 1.05374 0.76286 0.64972 0.63329 0.57173 1.26236 1.06548 1.18887 1.05368 1.26218 1.06583 1.08546 1.15597 1.37479 0.99210 1.00432 1.05084 1.21595 1.01088 1.00130 0.96320 1.16534 0.98981 0.95257 0.90046 1.21392 0.97126 0.94147 0.99970 1.21230 0.98841 1.00144 0.90959 1.19894 0.99776 0.96349 0.94150 1.20236 0.91290 0.90641 0.93629 1.45824 1.22944 1.38412 1.28449 1.17972 0.85662 0.80766 0.80805 1.90876 1.27808 1.69046 1.55987 1.19790 0.96997 1.00567 0.97821 1.21351 0.90439 0.97314 1.00472 1.17278 0.83559 0.97877 0.92579 1.91566 1.45937 1.94598 1.78060 1.19597 0.94973 0.97461 0.93912 1.24805 0.91291 0.98641 1.05164 1.86456 1.32908 1.38219 1.79132 0.85356 0.80381 0.76862 0.78025 1.17574 1.18563 1.16541 1.21073 0.92978 0.99876 1.01956 1.17729 0.83015 0.96295 0.90998 1.91598 1.46284 1.94511 1.77767 1.21229 0.96244 0.94541 0.99240 1.21389 0.99901 1.00405 0.90984 0.91207 0.89256 0.91198 0.91310 0.89247 0.91226 0.91143 0.89262 0.91237 0.84792 0.83421 0.89934 0.90053 0.74731 0.80198 0.87752 0.74395 0.82027 0.83534 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.34 8.65 113.37 0.98 3.32 16 2 Si 1.20 -7.04 14.26 68.60 0.98 -6.06 16 3 C -0.46 2.20 8.65 113.37 0.98 3.19 16 4 C -0.46 2.34 8.65 113.37 0.98 3.32 16 5 C -0.39 -1.45 12.14 74.32 0.90 -0.55 16 6 C -0.19 -1.44 13.24 30.02 0.40 -1.04 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.17 16 8 C -0.11 -0.24 9.75 22.52 0.22 -0.02 16 9 C -0.09 0.11 9.68 22.23 0.22 0.32 16 10 C -0.10 0.15 5.25 -19.81 -0.10 0.04 16 11 C 0.16 -0.15 5.79 85.63 0.50 0.35 16 12 N -0.70 0.86 5.50 -469.84 -2.58 -1.73 16 13 C 0.56 3.10 7.77 86.74 0.67 3.78 16 14 O -0.56 -7.94 15.34 -3.92 -0.06 -8.00 16 15 C -0.15 -0.45 5.88 -20.06 -0.12 -0.57 16 16 C -0.08 0.16 9.52 22.57 0.21 0.37 16 17 C 0.11 0.02 7.23 22.33 0.16 0.18 16 18 F -0.12 -0.16 16.73 44.97 0.75 0.59 16 19 C -0.06 -0.03 5.30 -19.78 -0.10 -0.14 16 20 C -0.09 0.30 2.43 71.24 0.17 0.47 16 21 O -0.56 1.22 12.86 -148.98 -1.92 -0.70 16 22 Si 0.97 -3.76 25.48 68.60 1.75 -2.01 16 23 H -0.25 0.59 7.11 99.48 0.71 1.30 16 24 H -0.26 0.23 6.72 99.48 0.67 0.90 16 25 H -0.24 1.11 7.11 99.48 0.71 1.82 16 26 C -0.14 -0.29 8.62 22.27 0.19 -0.10 16 27 C 0.14 0.82 7.28 22.67 0.17 0.98 16 28 F -0.12 -1.38 15.55 44.97 0.70 -0.68 16 29 C -0.09 0.08 9.68 22.23 0.22 0.30 16 30 C -0.11 -0.27 9.75 22.52 0.22 -0.05 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 33 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 34 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 36 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 37 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 38 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 39 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 40 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 41 H 0.15 -0.71 8.06 -2.91 -0.02 -0.73 16 42 H 0.08 -0.01 8.08 -2.39 -0.02 -0.03 16 43 H 0.08 0.01 8.08 -2.39 -0.02 -0.01 16 44 H 0.41 -2.66 6.50 -92.71 -0.60 -3.26 16 45 H 0.18 -1.57 6.40 -2.91 -0.02 -1.58 16 46 H 0.10 -0.73 7.89 -2.39 -0.02 -0.75 16 47 H 0.40 -4.59 8.74 -74.06 -0.65 -5.24 16 48 H 0.16 -0.06 4.86 -2.91 -0.01 -0.07 16 49 H 0.15 -0.64 8.06 -2.91 -0.02 -0.66 16 50 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 Total: 0.00 -23.38 442.12 6.84 -16.55 By element: Atomic # 1 Polarization: -12.42 SS G_CDS: 0.48 Total: -11.94 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.74 Total: 13.99 kcal Atomic # 7 Polarization: 0.86 SS G_CDS: -2.58 Total: -1.73 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -1.98 Total: -8.70 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 1.45 Total: -0.09 kcal Atomic # 14 Polarization: -10.80 SS G_CDS: 2.73 Total: -8.08 kcal Total: -23.38 6.84 -16.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12360598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.293 kcal (2) G-P(sol) polarization free energy of solvation -23.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds