Wall clock time and date at job start Sun Mar 7 2021 03:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35663 * 116.99973 * 2 1 4 4 C 1.38667 * 120.14637 * 359.72297 * 3 2 1 5 5 C 1.38098 * 120.08093 * 180.27516 * 4 3 2 6 6 C 1.38501 * 120.39171 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.84999 * 179.97438 * 6 5 4 8 8 O 1.42893 * 109.47303 * 120.01695 * 7 6 5 9 9 Si 1.86299 * 109.47027 * 0.02562 * 7 6 5 10 10 H 1.48502 * 109.47439 * 59.99992 * 9 7 6 11 11 H 1.48495 * 109.47186 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47030 * 299.99991 * 9 7 6 13 13 C 1.37825 * 120.30084 * 359.97438 * 6 5 4 14 14 C 1.39667 * 119.90904 * 0.02562 * 13 6 5 15 15 C 1.47535 * 120.19381 * 179.97438 * 14 13 6 16 16 O 1.21591 * 120.00143 * 180.02562 * 15 14 13 17 17 N 1.34771 * 120.00253 * 0.02562 * 15 14 13 18 18 C 1.46499 * 120.00393 * 180.02562 * 17 15 14 19 19 C 1.50708 * 109.47103 * 179.97438 * 18 17 15 20 20 C 1.38333 * 119.85542 * 269.72144 * 19 18 17 21 21 C 1.37975 * 120.14352 * 179.76566 * 20 19 18 22 22 C 1.39541 * 119.85158 * 0.51055 * 21 20 19 23 23 C 1.43198 * 120.14344 * 179.72398 * 22 21 20 24 24 C 9.55836 * 102.40156 * 0.70525 * 8 1 2 25 25 Si 9.37340 * 157.77645 * 179.84047 * 17 3 1 26 26 C 1.86302 * 109.46641 * 205.22529 * 25 24 23 27 27 C 1.86292 * 109.47200 * 325.22692 * 25 24 23 28 28 C 1.86304 * 109.47038 * 85.22986 * 25 24 23 29 29 C 1.39537 * 119.71733 * 359.74261 * 22 21 20 30 30 C 1.37971 * 119.85538 * 0.02562 * 29 22 21 31 31 H 1.09005 * 109.46640 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47222 * 299.99920 * 1 2 3 33 33 H 1.08999 * 109.47174 * 60.00230 * 1 2 3 34 34 H 1.07996 * 119.95917 * 0.25086 * 4 3 2 35 35 H 1.08007 * 119.80195 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.46981 * 240.02257 * 7 6 5 37 37 H 0.96703 * 114.00380 * 300.00252 * 8 7 6 38 38 H 1.08005 * 120.04827 * 180.02562 * 13 6 5 39 39 H 0.97002 * 119.99711 * 359.97438 * 17 15 14 40 40 H 1.08999 * 109.46653 * 299.99323 * 18 17 15 41 41 H 1.08987 * 109.47414 * 59.99797 * 18 17 15 42 42 H 1.08007 * 119.93226 * 359.97438 * 20 19 18 43 43 H 1.07998 * 120.08071 * 180.23566 * 21 20 19 44 44 H 1.09000 * 109.47247 * 60.00184 * 26 25 24 45 45 H 1.09006 * 109.46705 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.47663 * 299.99688 * 26 25 24 47 47 H 1.09000 * 109.47584 * 60.00392 * 27 25 24 48 48 H 1.09006 * 109.47283 * 180.02562 * 27 25 24 49 49 H 1.09000 * 109.47037 * 300.00030 * 27 25 24 50 50 H 1.09001 * 109.47217 * 59.99711 * 28 25 24 51 51 H 1.08997 * 109.46800 * 180.02562 * 28 25 24 52 52 H 1.09003 * 109.46679 * 299.99550 * 28 25 24 53 53 H 1.08006 * 120.07141 * 179.97438 * 29 22 21 54 54 H 1.08004 * 119.93008 * 179.97438 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2926 2.3736 -0.0058 5 6 1.9209 3.6034 -0.0115 6 6 3.3036 3.6837 -0.0121 7 6 3.9766 5.0321 -0.0189 8 8 4.7925 5.1632 1.1468 9 14 2.6824 6.3721 -0.0248 10 1 1.8355 6.2477 1.1887 11 1 3.3455 7.7007 -0.0322 12 1 1.8343 6.2359 -1.2363 13 6 4.0669 2.5361 -0.0064 14 6 3.4445 1.2858 -0.0005 15 6 4.2554 0.0533 0.0050 16 8 3.7099 -1.0334 0.0096 17 7 5.6008 0.1318 0.0050 18 6 6.4060 -1.0920 0.0100 19 6 7.8692 -0.7307 0.0083 20 6 8.5389 -0.5762 -1.1922 21 6 9.8773 -0.2407 -1.2008 22 6 10.5577 -0.0677 0.0051 23 6 11.9481 0.2747 0.0036 24 6 13.0882 0.5544 0.0054 25 14 14.9330 1.0097 0.0025 26 6 15.1562 2.7015 0.7501 27 6 15.8831 -0.2418 1.0032 28 6 15.5682 1.0160 -1.7489 29 6 9.8775 -0.2302 1.2126 30 6 8.5380 -0.5610 1.2073 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2140 2.3191 -0.0062 35 1 1.3306 4.5078 -0.0165 36 1 4.5982 5.1234 -0.9097 37 1 4.3044 5.0922 1.9786 38 1 5.1448 2.6035 -0.0064 39 1 6.0360 0.9987 0.0010 40 1 6.1763 -1.6744 0.9023 41 1 6.1767 -1.6814 -0.8776 42 1 8.0123 -0.7152 -2.1249 43 1 10.3982 -0.1167 -2.1386 44 1 14.7845 2.6978 1.7748 45 1 16.2145 2.9625 0.7488 46 1 14.6003 3.4338 0.1646 47 1 15.7525 -1.2316 0.5658 48 1 16.9413 0.0196 1.0019 49 1 15.5114 -0.2455 2.0279 50 1 15.0123 1.7483 -2.3344 51 1 16.6266 1.2767 -1.7505 52 1 15.4376 0.0262 -2.1863 53 1 10.3986 -0.0980 2.1494 54 1 8.0105 -0.6874 2.1412 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_12496546.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:34:07 Heat of formation + Delta-G solvation = -46.318576 kcal Electronic energy + Delta-G solvation = -32639.404024 eV Core-core repulsion = 28245.183453 eV Total energy + Delta-G solvation = -4394.220571 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 397.167 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.81880 -40.71286 -39.86992 -39.21173 -37.12632 -36.35104 -34.44126 -32.91989 -32.10372 -31.87902 -31.29052 -29.45255 -28.60316 -28.28121 -28.27763 -27.47082 -26.15600 -25.01166 -23.76802 -23.13003 -22.37188 -21.51023 -19.67030 -19.52621 -18.47354 -18.28803 -17.47284 -16.98933 -16.70294 -16.67655 -16.48364 -16.10233 -16.00473 -15.89149 -15.78998 -15.76376 -15.14761 -14.63670 -14.58316 -14.54183 -14.41117 -14.13439 -14.09673 -13.92157 -13.84463 -13.82816 -13.66038 -13.36865 -13.15971 -13.15517 -13.13812 -12.98070 -12.62410 -12.45102 -12.37908 -12.24649 -12.19790 -12.07830 -12.04979 -11.99242 -11.62220 -11.60883 -11.12935 -10.79117 -10.63710 -10.38785 -10.36008 -10.11245 -10.05513 -9.52316 -9.31079 -0.31083 -0.29783 0.18740 0.29651 1.19681 1.38947 1.48056 1.52689 1.55960 1.71045 1.73733 1.94384 2.07935 2.23874 2.39869 2.44364 2.48175 2.65185 2.99243 3.46846 3.47729 3.54432 3.67448 3.74195 3.76441 3.83562 3.91281 3.96205 4.09975 4.26544 4.28125 4.30406 4.33405 4.38858 4.57945 4.59393 4.63534 4.67625 4.72369 4.82393 4.84228 4.84386 4.87288 4.90136 4.90148 4.90250 4.93026 4.96937 5.05992 5.18850 5.23587 5.27877 5.38595 5.44084 5.53181 5.59072 5.68613 5.68997 5.80292 6.26299 6.45539 6.57870 6.73013 7.14918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.312 6.312 3 C 0.172 3.828 4 C -0.212 4.212 5 C -0.055 4.055 6 C -0.167 4.167 7 C -0.072 4.072 8 O -0.551 6.551 9 Si 0.976 3.024 10 H -0.249 1.249 11 H -0.277 1.277 12 H -0.254 1.254 13 C -0.013 4.013 14 C -0.194 4.194 15 C 0.559 3.441 16 O -0.562 6.562 17 N -0.713 5.713 18 C 0.167 3.833 19 C -0.099 4.099 20 C -0.095 4.095 21 C -0.108 4.108 22 C -0.009 4.009 23 C -0.191 4.191 24 C -0.391 4.391 25 Si 1.202 2.798 26 C -0.462 4.462 27 C -0.463 4.463 28 C -0.462 4.462 29 C -0.108 4.108 30 C -0.095 4.095 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.389 0.611 38 H 0.152 0.848 39 H 0.411 0.589 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.146 0.854 43 H 0.135 0.865 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.089 0.911 52 H 0.068 0.932 53 H 0.134 0.866 54 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 4.886 0.091 5.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.223 6.223 3 C 0.124 3.876 4 C -0.231 4.231 5 C -0.073 4.073 6 C -0.167 4.167 7 C -0.182 4.182 8 O -0.359 6.359 9 Si 0.800 3.200 10 H -0.173 1.173 11 H -0.203 1.203 12 H -0.178 1.178 13 C -0.032 4.032 14 C -0.198 4.198 15 C 0.347 3.653 16 O -0.442 6.442 17 N -0.367 5.367 18 C 0.044 3.956 19 C -0.100 4.100 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.009 4.009 23 C -0.191 4.191 24 C -0.421 4.421 25 Si 1.383 2.617 26 C -0.569 4.569 27 C -0.570 4.570 28 C -0.569 4.569 29 C -0.125 4.125 30 C -0.113 4.113 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.178 0.822 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.238 0.762 38 H 0.169 0.831 39 H 0.248 0.752 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.108 0.892 52 H 0.087 0.913 53 H 0.152 0.848 54 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.449 4.548 -0.347 4.583 hybrid contribution -0.616 -0.308 0.353 0.774 sum -0.167 4.240 0.006 4.243 Atomic orbital electron populations 1.23452 0.76539 1.05556 1.02777 1.86337 1.23182 1.26277 1.86553 1.19370 0.91312 0.85473 0.91459 1.21432 1.01690 0.90966 1.09001 1.21285 0.94154 0.97951 0.93866 1.20267 0.93531 0.96425 1.06504 1.24935 1.02922 0.98037 0.92350 1.86493 1.37923 1.95281 1.16160 0.85318 0.76591 0.76665 0.81417 1.17274 1.20270 1.17804 1.21101 1.00751 0.89072 0.92230 1.19401 0.91065 0.93995 1.15366 1.18252 0.82328 0.88664 0.76014 1.90820 1.72409 1.30194 1.50727 1.45865 1.05036 1.10355 1.75419 1.20137 0.85448 0.86703 1.03311 1.19915 0.94858 1.01556 0.93657 1.21206 0.93744 0.97906 0.98511 1.21383 0.94759 0.99117 0.97284 1.16519 0.88571 1.01082 0.94707 1.21570 0.93949 1.01599 1.01982 1.37495 1.07831 0.98566 0.98256 0.76279 0.53205 0.65674 0.66515 1.26221 1.05828 1.17646 1.07228 1.26232 1.09587 1.11928 1.09263 1.26219 1.07360 1.04728 1.18635 1.21382 0.94752 0.99143 0.97272 1.21206 0.93728 0.97877 0.98539 0.87270 0.90918 0.90928 0.82212 0.83724 0.85393 0.76162 0.83089 0.75185 0.90609 0.90596 0.83666 0.84748 0.91214 0.89236 0.91221 0.91313 0.89234 0.91221 0.91168 0.89241 0.91257 0.84767 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.81 8.57 -68.88 -0.59 -3.40 16 3 C 0.17 1.04 6.70 22.84 0.15 1.20 16 4 C -0.21 0.00 9.03 22.34 0.20 0.20 16 5 C -0.05 0.11 8.66 22.30 0.19 0.31 16 6 C -0.17 0.31 5.39 -19.90 -0.11 0.20 16 7 C -0.07 0.30 2.81 71.24 0.20 0.50 16 8 O -0.55 1.53 12.76 -148.98 -1.90 -0.37 16 9 Si 0.98 -3.94 25.05 68.60 1.72 -2.22 16 10 H -0.25 1.07 7.11 99.48 0.71 1.78 16 11 H -0.28 -0.08 7.11 99.48 0.71 0.63 16 12 H -0.25 0.85 7.11 99.48 0.71 1.56 16 13 C -0.01 0.00 9.09 22.52 0.20 0.20 16 14 C -0.19 -1.12 5.89 -20.01 -0.12 -1.24 16 15 C 0.56 5.15 7.76 86.70 0.67 5.82 16 16 O -0.56 -9.87 15.16 16.91 0.26 -9.61 16 17 N -0.71 -1.94 5.50 -470.02 -2.58 -4.53 16 18 C 0.17 0.42 5.79 85.64 0.50 0.91 16 19 C -0.10 -0.13 5.25 -19.81 -0.10 -0.23 16 20 C -0.10 -0.13 9.68 22.23 0.22 0.09 16 21 C -0.11 -0.44 9.75 22.52 0.22 -0.22 16 22 C -0.01 -0.06 5.72 -21.41 -0.12 -0.18 16 23 C -0.19 -1.65 13.24 30.02 0.40 -1.25 16 24 C -0.39 -1.77 12.15 74.32 0.90 -0.87 16 25 Si 1.20 -6.36 14.26 68.60 0.98 -5.38 16 26 C -0.46 2.08 8.65 113.37 0.98 3.06 16 27 C -0.46 1.99 8.65 113.37 0.98 2.97 16 28 C -0.46 2.08 8.65 113.37 0.98 3.06 16 29 C -0.11 -0.45 9.75 22.52 0.22 -0.23 16 30 C -0.10 -0.14 9.68 22.23 0.22 0.08 16 31 H 0.11 -0.24 8.14 -2.38 -0.02 -0.26 16 32 H 0.07 -0.30 7.67 -2.39 -0.02 -0.32 16 33 H 0.07 -0.30 7.65 -2.39 -0.02 -0.32 16 34 H 0.16 -0.79 6.30 -2.91 -0.02 -0.81 16 35 H 0.15 -0.87 4.85 -2.91 -0.01 -0.88 16 36 H 0.13 -0.77 7.96 -2.39 -0.02 -0.79 16 37 H 0.39 -3.39 8.70 -74.05 -0.64 -4.03 16 38 H 0.15 -0.56 6.40 -2.91 -0.02 -0.58 16 39 H 0.41 -0.70 6.49 -92.71 -0.60 -1.30 16 40 H 0.08 0.28 8.08 -2.39 -0.02 0.26 16 41 H 0.08 0.27 8.08 -2.39 -0.02 0.26 16 42 H 0.15 -0.30 8.06 -2.91 -0.02 -0.33 16 43 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 44 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 45 H 0.09 -0.59 7.96 -2.38 -0.02 -0.61 16 46 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 47 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 48 H 0.09 -0.58 7.96 -2.38 -0.02 -0.60 16 49 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 50 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 51 H 0.09 -0.59 7.96 -2.39 -0.02 -0.61 16 52 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 53 H 0.13 0.28 8.06 -2.91 -0.02 0.25 16 54 H 0.15 -0.28 8.06 -2.91 -0.02 -0.30 16 Total: 0.00 -24.56 458.97 6.22 -18.34 By element: Atomic # 1 Polarization: -8.77 SS G_CDS: 0.45 Total: -8.32 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 7.90 Total: 15.49 kcal Atomic # 7 Polarization: -1.94 SS G_CDS: -2.58 Total: -4.53 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -2.24 Total: -13.38 kcal Atomic # 14 Polarization: -10.29 SS G_CDS: 2.70 Total: -7.60 kcal Total: -24.56 6.22 -18.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12496546.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.977 kcal (2) G-P(sol) polarization free energy of solvation -24.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds