Wall clock time and date at job start Sun Mar 7 2021 03:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86300 * 109.47021 * 2 1 4 4 C 1.86298 * 109.47196 * 240.00063 * 2 1 3 5 5 C 1.89998 * 109.47058 * 120.00004 * 2 1 3 6 6 C 3.07401 * 109.47002 * 119.99783 * 2 1 3 7 7 C 4.50601 * 109.47061 * 119.99866 * 2 1 3 8 8 C 1.39542 * 120.14032 * 64.80743 * 7 6 5 9 9 C 1.37973 * 119.85104 * 180.02562 * 8 7 6 10 10 C 1.38344 * 120.14409 * 0.02627 * 9 8 7 11 11 C 1.50700 * 119.85640 * 179.97438 * 10 9 8 12 12 N 1.46503 * 109.47231 * 89.99618 * 11 10 9 13 13 C 1.34771 * 119.99794 * 180.02562 * 12 11 10 14 14 O 1.21564 * 120.00708 * 0.02562 * 13 12 11 15 15 C 1.47726 * 119.99713 * 180.02562 * 13 12 11 16 16 C 1.39633 * 120.11806 * 359.97438 * 15 13 12 17 17 C 1.37867 * 119.88004 * 179.97438 * 16 15 13 18 18 C 1.38630 * 120.11686 * 0.02562 * 17 16 15 19 19 F 1.35098 * 119.87978 * 179.97438 * 18 17 16 20 20 C 1.38681 * 120.23910 * 359.97438 * 18 17 16 21 21 C 1.50701 * 119.93837 * 179.97438 * 20 18 17 22 22 O 1.42895 * 109.47079 * 195.00416 * 21 20 18 23 23 Si 1.86301 * 109.47149 * 314.99911 * 21 20 18 24 24 H 1.48506 * 109.47302 * 59.99966 * 23 21 20 25 25 H 1.48503 * 109.47334 * 300.00099 * 23 21 20 26 26 H 1.48500 * 109.47376 * 180.02562 * 23 21 20 27 27 C 1.37809 * 120.12043 * 0.25658 * 20 18 17 28 28 C 1.38338 * 120.28635 * 0.25015 * 10 9 8 29 29 C 1.37977 * 120.14337 * 359.44722 * 28 10 9 30 30 H 1.09000 * 109.47304 * 300.00469 * 1 2 3 31 31 H 1.08994 * 109.47334 * 60.00132 * 1 2 3 32 32 H 1.08998 * 109.46912 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46932 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47179 * 299.99671 * 3 2 1 35 35 H 1.08994 * 109.47180 * 59.99937 * 3 2 1 36 36 H 1.09004 * 109.46554 * 299.99763 * 4 2 1 37 37 H 1.08994 * 109.47138 * 59.99685 * 4 2 1 38 38 H 1.08994 * 109.47183 * 180.02562 * 4 2 1 39 39 H 1.07994 * 120.07179 * 0.02562 * 8 7 6 40 40 H 1.08004 * 119.92482 * 180.02562 * 9 8 7 41 41 H 1.09006 * 109.47014 * 330.00045 * 11 10 9 42 42 H 1.08998 * 109.47279 * 210.00202 * 11 10 9 43 43 H 0.96998 * 119.99431 * 0.02562 * 12 11 10 44 44 H 1.07997 * 120.06054 * 359.97438 * 16 15 13 45 45 H 1.08000 * 119.93938 * 179.97438 * 17 16 15 46 46 H 1.09001 * 109.47380 * 74.99813 * 21 20 18 47 47 H 0.96696 * 114.00435 * 59.99627 * 22 21 20 48 48 H 1.08004 * 120.06040 * 179.72186 * 27 20 18 49 49 H 1.08006 * 119.92962 * 179.70629 * 28 10 9 50 50 H 1.07994 * 120.07082 * 180.25096 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4963 -0.8957 1.5513 6 6 2.8876 -1.4490 2.5100 7 6 3.3650 -2.1241 3.6792 8 6 3.6939 -3.4789 3.6208 9 6 4.1527 -4.1235 4.7511 10 6 4.2865 -3.4298 5.9405 11 6 4.7877 -4.1404 7.1713 12 7 6.2481 -4.0411 7.2318 13 6 6.9203 -4.6077 8.2534 14 8 6.3149 -5.2015 9.1244 15 6 8.3928 -4.5070 8.3148 16 6 9.0908 -3.8260 7.3154 17 6 10.4650 -3.7346 7.3778 18 6 11.1539 -4.3178 8.4300 19 9 12.5005 -4.2258 8.4861 20 6 10.4656 -4.9954 9.4252 21 6 11.2213 -5.6273 10.5657 22 8 10.3667 -6.5425 11.2542 23 14 12.7013 -6.5415 9.8989 24 1 13.5895 -5.5906 9.1833 25 1 12.2483 -7.5985 8.9593 26 1 13.4457 -7.1648 11.0226 27 6 9.0923 -5.0968 9.3701 28 6 3.9567 -2.0879 6.0064 29 6 3.5026 -1.4300 4.8818 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.5740 1.7564 -0.0005 34 1 2.1207 2.2703 -0.8900 35 1 2.1206 2.2703 0.8899 36 1 2.1207 -1.9059 -1.5210 37 1 2.1207 -0.3644 -2.4111 38 1 3.5740 -0.8786 -1.5209 39 1 3.5895 -4.0216 2.6930 40 1 4.4081 -5.1721 4.7072 41 1 4.4964 -5.1900 7.1288 42 1 4.3550 -3.6790 8.0589 43 1 6.7312 -3.5676 6.5367 44 1 8.5551 -3.3716 6.4950 45 1 11.0059 -3.2084 6.6051 46 1 11.5539 -4.8515 11.2553 47 1 10.0324 -7.2612 10.7004 48 1 8.5576 -5.6285 10.1433 49 1 4.0588 -1.5530 6.9392 50 1 3.2493 -0.3815 4.9336 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_12496548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:39:23 Heat of formation + Delta-G solvation = -49.347249 kcal Electronic energy + Delta-G solvation = -30204.140317 eV Core-core repulsion = 25814.554248 eV Total energy + Delta-G solvation = -4389.586069 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 385.142 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.40491 -41.50018 -40.51102 -39.63238 -37.71420 -36.44937 -34.47732 -32.90966 -32.15606 -32.09993 -31.26062 -29.45917 -28.28852 -28.28499 -27.74575 -26.92191 -24.74373 -23.76626 -23.26540 -22.88228 -21.54234 -19.54874 -19.45987 -18.85638 -18.25433 -17.79883 -17.18442 -16.94514 -16.81938 -16.51022 -16.07073 -15.97494 -15.94975 -15.76317 -15.20948 -15.15138 -14.83413 -14.54198 -14.42556 -14.27868 -14.15507 -14.11179 -13.98438 -13.93218 -13.84968 -13.83217 -13.32194 -13.16710 -13.16370 -12.98691 -12.80644 -12.63738 -12.43284 -12.37831 -12.21104 -12.03698 -11.99607 -11.61300 -11.41924 -11.24054 -10.93558 -10.80017 -10.64238 -10.33927 -10.07410 -10.04469 -9.71836 -9.52963 -0.53169 -0.30311 0.00109 0.29874 1.08189 1.38155 1.40349 1.46982 1.54399 1.58064 1.70321 1.89140 2.03203 2.39177 2.41471 2.47545 2.56810 2.97918 2.98489 3.24514 3.35021 3.48780 3.60194 3.68867 3.77002 3.83433 3.91808 3.97397 4.11266 4.27207 4.30717 4.44237 4.52343 4.60066 4.65703 4.78799 4.83060 4.83396 4.83817 4.86631 4.87992 4.89450 4.89642 4.92368 4.97479 5.00265 5.07247 5.18408 5.22118 5.39188 5.43920 5.58522 5.59186 5.67984 5.68403 5.80618 6.36748 6.54524 6.57103 7.04094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.201 2.799 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.392 4.392 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.109 4.109 9 C -0.094 4.094 10 C -0.100 4.100 11 C 0.164 3.836 12 N -0.708 5.708 13 C 0.561 3.439 14 O -0.572 6.572 15 C -0.151 4.151 16 C -0.047 4.047 17 C -0.147 4.147 18 C 0.105 3.895 19 F -0.127 7.127 20 C -0.162 4.162 21 C -0.077 4.077 22 O -0.548 6.548 23 Si 0.969 3.031 24 H -0.235 1.235 25 H -0.260 1.260 26 H -0.271 1.271 27 C -0.030 4.030 28 C -0.095 4.095 29 C -0.109 4.109 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.414 0.586 44 H 0.168 0.832 45 H 0.171 0.829 46 H 0.133 0.867 47 H 0.390 0.610 48 H 0.146 0.854 49 H 0.147 0.853 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 3.488 -7.068 7.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.383 2.617 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.423 4.423 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.100 4.100 11 C 0.042 3.958 12 N -0.360 5.360 13 C 0.350 3.650 14 O -0.452 6.452 15 C -0.155 4.155 16 C -0.066 4.066 17 C -0.166 4.166 18 C 0.085 3.915 19 F -0.106 7.106 20 C -0.163 4.163 21 C -0.187 4.187 22 O -0.355 6.355 23 Si 0.792 3.208 24 H -0.158 1.158 25 H -0.184 1.184 26 H -0.196 1.196 27 C -0.049 4.049 28 C -0.113 4.113 29 C -0.127 4.127 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.151 0.849 40 H 0.165 0.835 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.252 0.748 44 H 0.186 0.814 45 H 0.189 0.811 46 H 0.150 0.850 47 H 0.240 0.760 48 H 0.163 0.837 49 H 0.164 0.836 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.056 2.951 -6.158 6.829 hybrid contribution -0.052 -0.114 -0.047 0.134 sum 0.004 2.837 -6.205 6.822 Atomic orbital electron populations 1.26243 1.20657 1.04853 1.05332 0.76279 0.64821 0.63452 0.57198 1.26216 1.06619 1.18716 1.05370 1.26215 1.06623 1.08508 1.15575 1.37468 0.99163 1.00566 1.05086 1.21604 1.01111 1.00057 0.96313 1.16528 1.00287 0.93619 0.90470 1.21390 0.98646 0.92914 0.99698 1.21223 0.97799 1.00932 0.91271 1.19910 1.01205 0.94228 0.94674 1.20196 0.79448 1.00831 0.95371 1.45849 1.07492 1.56320 1.26367 1.18320 0.87289 0.78149 0.81276 1.90810 1.70423 1.44094 1.39923 1.19958 0.92548 1.04438 0.98521 1.21473 0.93421 0.94551 0.97120 1.21408 0.94914 1.01609 0.98656 1.18001 0.77271 0.99750 0.96449 1.91583 1.28977 1.93856 1.96161 1.20388 0.95014 1.02952 0.97990 1.24949 1.00763 0.96888 0.96066 1.86493 1.67455 1.41227 1.40302 0.85652 0.77458 0.78672 0.79037 1.15822 1.18387 1.19647 1.20930 0.91946 0.95348 0.96635 1.21224 0.97407 0.93896 0.98757 1.21385 0.99172 1.00577 0.91522 0.91285 0.89267 0.91295 0.91159 0.89284 0.91202 0.91206 0.89281 0.91151 0.84860 0.83478 0.90184 0.90301 0.74785 0.81420 0.81149 0.84966 0.75997 0.83657 0.83558 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.33 8.65 113.37 0.98 3.31 16 2 Si 1.20 -7.54 14.26 68.60 0.98 -6.56 16 3 C -0.46 2.54 8.65 113.37 0.98 3.52 16 4 C -0.46 2.55 8.65 113.37 0.98 3.53 16 5 C -0.39 -1.26 12.14 74.32 0.90 -0.35 16 6 C -0.19 -1.33 13.24 30.01 0.40 -0.93 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 8 C -0.11 -0.17 9.75 22.52 0.22 0.05 16 9 C -0.09 0.17 9.68 22.23 0.22 0.39 16 10 C -0.10 0.23 5.25 -19.82 -0.10 0.13 16 11 C 0.16 -0.31 5.79 85.63 0.50 0.19 16 12 N -0.71 1.95 5.50 -469.82 -2.58 -0.64 16 13 C 0.56 1.81 7.77 86.75 0.67 2.49 16 14 O -0.57 -6.68 16.34 -3.92 -0.06 -6.74 16 15 C -0.15 -0.04 5.87 -20.09 -0.12 -0.16 16 16 C -0.05 0.26 9.54 22.52 0.21 0.47 16 17 C -0.15 0.65 10.01 22.28 0.22 0.88 16 18 C 0.10 -0.01 6.67 22.47 0.15 0.14 16 19 F -0.13 -0.23 12.82 44.97 0.58 0.35 16 20 C -0.16 -0.15 5.13 -19.86 -0.10 -0.25 16 21 C -0.08 -0.03 2.97 71.24 0.21 0.18 16 22 O -0.55 -0.93 11.64 -148.98 -1.73 -2.66 16 23 Si 0.97 0.86 26.09 68.60 1.79 2.65 16 24 H -0.24 -0.47 5.29 99.48 0.53 0.05 16 25 H -0.26 -0.50 7.11 99.48 0.71 0.21 16 26 H -0.27 -1.06 7.11 99.48 0.71 -0.36 16 27 C -0.03 -0.07 8.78 22.52 0.20 0.13 16 28 C -0.09 0.16 9.68 22.23 0.22 0.37 16 29 C -0.11 -0.18 9.75 22.52 0.22 0.03 16 30 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 31 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 32 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 33 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 34 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 35 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 37 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 38 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 39 H 0.13 -0.02 8.06 -2.91 -0.02 -0.05 16 40 H 0.15 -0.80 8.06 -2.91 -0.02 -0.83 16 41 H 0.08 -0.07 8.08 -2.38 -0.02 -0.09 16 42 H 0.08 -0.05 8.08 -2.39 -0.02 -0.07 16 43 H 0.41 -3.30 6.49 -92.71 -0.60 -3.90 16 44 H 0.17 -2.04 6.40 -2.91 -0.02 -2.06 16 45 H 0.17 -1.58 8.06 -2.91 -0.02 -1.61 16 46 H 0.13 -0.15 7.96 -2.39 -0.02 -0.17 16 47 H 0.39 -1.74 8.42 -74.06 -0.62 -2.37 16 48 H 0.15 0.60 6.65 -2.91 -0.02 0.58 16 49 H 0.15 -0.75 8.06 -2.91 -0.02 -0.77 16 50 H 0.13 0.00 8.06 -2.91 -0.02 -0.03 16 Total: 0.00 -21.21 433.90 6.13 -15.08 By element: Atomic # 1 Polarization: -15.76 SS G_CDS: 0.33 Total: -15.43 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 6.83 Total: 13.95 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -2.58 Total: -0.64 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -1.80 Total: -9.41 kcal Atomic # 9 Polarization: -0.23 SS G_CDS: 0.58 Total: 0.35 kcal Atomic # 14 Polarization: -6.67 SS G_CDS: 2.77 Total: -3.91 kcal Total: -21.21 6.13 -15.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12496548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.267 kcal (2) G-P(sol) polarization free energy of solvation -21.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds