Wall clock time and date at job start Sun Mar 7 2021 03:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86305 * 109.47119 * 2 1 4 4 C 1.86304 * 109.47094 * 239.99925 * 2 1 3 5 5 C 1.90000 * 109.47252 * 119.99872 * 2 1 3 6 6 C 3.07405 * 109.47035 * 119.99939 * 2 1 3 7 7 C 4.50605 * 109.47016 * 119.99886 * 2 1 3 8 8 C 1.39541 * 120.13726 * 318.50596 * 7 6 5 9 9 C 1.37973 * 119.85145 * 180.02562 * 8 7 6 10 10 C 1.38348 * 120.14268 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.85430 * 179.97438 * 10 9 8 12 12 N 1.46504 * 109.46913 * 90.00077 * 11 10 9 13 13 C 1.34781 * 119.99379 * 179.97438 * 12 11 10 14 14 O 1.21641 * 120.00603 * 0.02562 * 13 12 11 15 15 C 1.47064 * 119.99489 * 179.97438 * 13 12 11 16 16 C 1.35858 * 125.42470 * 179.97438 * 15 13 12 17 17 C 1.41595 * 107.72686 * 180.02562 * 16 15 13 18 18 C 1.40067 * 133.37796 * 180.29190 * 17 16 15 19 19 C 1.36474 * 119.82952 * 180.18686 * 18 17 16 20 20 C 1.38896 * 120.61082 * 359.51592 * 19 18 17 21 21 C 1.50703 * 119.67317 * 180.24562 * 20 19 18 22 22 O 1.42899 * 109.47019 * 244.97324 * 21 20 19 23 23 Si 1.86296 * 109.47081 * 4.97682 * 21 20 19 24 24 H 1.48505 * 109.47071 * 299.99456 * 23 21 20 25 25 H 1.48496 * 109.47551 * 60.00021 * 23 21 20 26 26 H 1.48506 * 109.47053 * 180.02562 * 23 21 20 27 27 C 1.37711 * 120.65597 * 0.21763 * 20 19 18 28 28 C 1.39191 * 119.80530 * 0.02847 * 27 20 19 29 29 N 1.37481 * 133.19120 * 179.97438 * 28 27 20 30 30 C 1.38341 * 120.28486 * 0.25317 * 10 9 8 31 31 C 1.37967 * 120.14505 * 359.44655 * 30 10 9 32 32 H 1.09007 * 109.47229 * 300.00211 * 1 2 3 33 33 H 1.09003 * 109.47329 * 60.00013 * 1 2 3 34 34 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.46603 * 179.97438 * 3 2 1 36 36 H 1.08993 * 109.47264 * 299.99701 * 3 2 1 37 37 H 1.08997 * 109.47039 * 60.00569 * 3 2 1 38 38 H 1.09004 * 109.46843 * 299.99838 * 4 2 1 39 39 H 1.08993 * 109.47248 * 60.00324 * 4 2 1 40 40 H 1.09004 * 109.46817 * 180.02562 * 4 2 1 41 41 H 1.07993 * 120.07548 * 0.02562 * 8 7 6 42 42 H 1.08003 * 119.92800 * 180.02562 * 9 8 7 43 43 H 1.08998 * 109.47280 * 330.00063 * 11 10 9 44 44 H 1.09007 * 109.46992 * 209.99897 * 11 10 9 45 45 H 0.96996 * 120.00157 * 359.97438 * 12 11 10 46 46 H 1.08003 * 126.13736 * 0.04099 * 16 15 13 47 47 H 1.08003 * 120.08482 * 359.92895 * 18 17 16 48 48 H 1.07995 * 119.69687 * 179.75440 * 19 18 17 49 49 H 1.09003 * 109.46894 * 124.97650 * 21 20 19 50 50 H 0.96707 * 113.99603 * 180.02562 * 22 21 20 51 51 H 1.07992 * 120.10361 * 179.97438 * 27 20 19 52 52 H 0.96999 * 125.60411 * 359.97438 * 29 28 27 53 53 H 1.08003 * 119.92662 * 179.70805 * 30 10 9 54 54 H 1.07999 * 120.07739 * 180.25381 * 31 30 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4963 -0.8956 1.5514 6 6 2.8876 -1.4491 2.5100 7 6 3.3649 -2.1241 3.6792 8 6 2.4834 -2.4432 4.7129 9 6 2.9498 -3.0931 5.8370 10 6 4.2881 -3.4280 5.9409 11 6 4.7905 -4.1373 7.1720 12 7 4.6948 -5.5858 6.9742 13 6 5.0910 -6.4267 7.9501 14 8 5.5276 -5.9831 8.9952 15 6 4.9944 -7.8807 7.7518 16 6 5.3609 -8.8250 8.6572 17 6 5.1102 -10.0943 8.0818 18 6 5.2810 -11.4077 8.5373 19 6 4.9426 -12.4554 7.7308 20 6 4.4198 -12.2322 6.4635 21 6 4.0481 -13.4047 5.5927 22 8 4.8916 -13.4279 4.4395 23 14 4.2663 -14.9857 6.5537 24 1 5.6831 -15.1148 6.9793 25 1 3.3896 -14.9617 7.7521 26 1 3.9006 -16.1412 5.6954 27 6 4.2372 -10.9502 5.9950 28 6 4.5796 -9.8652 6.7969 29 7 4.5171 -8.5039 6.6150 30 6 5.1681 -3.1093 4.9222 31 6 4.7134 -2.4650 3.7901 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 3.5740 1.7564 0.0005 36 1 2.1207 2.2703 -0.8899 37 1 2.1207 2.2703 0.8900 38 1 2.1206 -1.9060 -1.5211 39 1 2.1207 -0.3645 -2.4111 40 1 3.5740 -0.8786 -1.5209 41 1 1.4386 -2.1820 4.6331 42 1 2.2685 -3.3410 6.6376 43 1 4.1855 -3.8471 8.0309 44 1 5.8303 -3.8629 7.3505 45 1 4.3463 -5.9395 6.1410 46 1 5.7698 -8.6407 9.6397 47 1 5.6834 -11.5910 9.5227 48 1 5.0789 -13.4672 8.0827 49 1 3.0081 -13.3100 5.2803 50 1 4.7080 -14.1581 3.8326 51 1 3.8304 -10.7870 5.0080 52 1 4.1920 -8.0549 5.8191 53 1 6.2126 -3.3692 5.0114 54 1 5.4006 -2.2204 2.9937 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13158378.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:46:06 Heat of formation + Delta-G solvation = 20.308724 kcal Electronic energy + Delta-G solvation = -32416.069375 eV Core-core repulsion = 28021.541981 eV Total energy + Delta-G solvation = -4394.527394 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 406.163 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.73493 -40.98577 -40.20376 -38.84479 -36.98840 -36.53728 -34.48349 -33.35651 -32.14391 -31.96020 -30.99517 -30.46185 -29.47451 -28.30208 -28.30010 -27.98501 -26.39073 -24.32940 -23.81055 -23.25457 -22.80490 -21.95534 -21.25057 -19.77351 -19.56873 -18.47822 -18.02020 -17.56714 -17.00292 -16.96735 -16.64810 -16.27888 -16.17367 -16.02144 -15.59269 -15.28391 -15.20786 -14.93297 -14.69852 -14.59830 -14.56720 -14.45573 -14.19891 -14.13470 -14.08251 -13.91478 -13.85576 -13.80020 -13.50882 -13.18059 -13.17898 -13.00148 -12.74367 -12.68600 -12.42123 -12.32736 -12.25624 -12.19802 -12.02195 -11.94295 -11.65622 -11.64229 -11.53151 -10.97933 -10.82304 -10.66129 -10.42962 -10.27626 -10.10965 -9.57400 -9.36141 -8.85515 -0.40356 -0.34958 0.25546 0.47842 0.90917 1.20005 1.35702 1.48911 1.50632 1.56162 1.68128 1.74846 1.95105 1.98336 2.13521 2.37028 2.37202 2.45817 2.71067 2.94770 3.41142 3.47236 3.57335 3.64285 3.72497 3.79661 3.87637 3.91336 3.98354 4.20432 4.22482 4.26089 4.29269 4.40845 4.43426 4.55378 4.55543 4.63955 4.78614 4.82018 4.82319 4.85102 4.85715 4.88117 4.88209 4.90869 4.93111 4.95570 5.03960 5.15242 5.28376 5.34982 5.36256 5.39129 5.50359 5.54684 5.57107 5.66666 5.66847 5.76177 5.93668 6.18143 6.38190 6.54187 6.84253 6.86383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.200 2.800 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.390 4.390 6 C -0.192 4.192 7 C -0.007 4.007 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.102 4.102 11 C 0.164 3.836 12 N -0.709 5.709 13 C 0.589 3.411 14 O -0.556 6.556 15 C 0.011 3.989 16 C -0.115 4.115 17 C -0.136 4.136 18 C -0.059 4.059 19 C -0.162 4.162 20 C -0.055 4.055 21 C -0.080 4.080 22 O -0.562 6.562 23 Si 0.978 3.022 24 H -0.271 1.271 25 H -0.258 1.258 26 H -0.257 1.257 27 C -0.106 4.106 28 C 0.108 3.892 29 N -0.564 5.564 30 C -0.095 4.095 31 C -0.109 4.109 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.410 0.590 46 H 0.158 0.842 47 H 0.146 0.854 48 H 0.131 0.869 49 H 0.099 0.901 50 H 0.398 0.602 51 H 0.143 0.857 52 H 0.431 0.569 53 H 0.147 0.853 54 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -0.250 -6.530 7.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.382 2.618 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.421 4.421 6 C -0.192 4.192 7 C -0.008 4.008 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.102 4.102 11 C 0.042 3.958 12 N -0.361 5.361 13 C 0.376 3.624 14 O -0.434 6.434 15 C -0.099 4.099 16 C -0.142 4.142 17 C -0.141 4.141 18 C -0.077 4.077 19 C -0.180 4.180 20 C -0.057 4.057 21 C -0.190 4.190 22 O -0.371 6.371 23 Si 0.803 3.197 24 H -0.196 1.196 25 H -0.182 1.182 26 H -0.181 1.181 27 C -0.126 4.126 28 C -0.003 4.003 29 N -0.170 5.170 30 C -0.113 4.113 31 C -0.127 4.127 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.246 0.754 46 H 0.175 0.825 47 H 0.164 0.836 48 H 0.149 0.851 49 H 0.117 0.883 50 H 0.249 0.751 51 H 0.160 0.840 52 H 0.272 0.728 53 H 0.164 0.836 54 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.473 -0.064 -5.006 6.094 hybrid contribution -0.287 -0.067 -0.756 0.811 sum -3.760 -0.131 -5.762 6.882 Atomic orbital electron populations 1.26217 1.20377 1.04940 1.05392 0.76300 0.65017 0.63332 0.57161 1.26236 1.06590 1.18873 1.05346 1.26218 1.06603 1.08504 1.15592 1.37496 0.99382 1.00214 1.05012 1.21593 1.01050 1.00236 0.96342 1.16531 0.94217 0.98627 0.91380 1.21393 0.99979 0.98381 0.92886 1.21230 0.95261 0.97020 0.97715 1.19904 0.93970 1.00592 0.95755 1.20253 1.02541 0.77877 0.95123 1.45828 1.65079 1.06546 1.18614 1.17216 0.77483 0.84187 0.83527 1.90868 1.47209 1.77422 1.27931 1.19958 1.08519 0.91835 0.89593 1.21090 1.03011 0.89889 1.00201 1.18415 1.06440 0.94159 0.95074 1.20570 0.97199 0.89683 1.00287 1.20694 1.02953 0.99577 0.94826 1.19264 0.98649 0.93714 0.94099 1.24754 0.97461 1.04644 0.92124 1.86471 1.60139 1.55763 1.34766 0.85285 0.80003 0.75285 0.79118 1.19593 1.18203 1.18096 1.20023 1.03788 0.89123 0.99663 1.18444 1.01700 0.83997 0.96124 1.41776 1.55309 1.04123 1.15746 1.21225 1.00712 0.97139 0.92203 1.21389 0.94078 0.98354 0.98847 0.91207 0.89242 0.91160 0.91250 0.89227 0.91295 0.91200 0.89234 0.91206 0.84806 0.83491 0.89819 0.89891 0.75399 0.82485 0.83617 0.85109 0.88285 0.75128 0.83971 0.72822 0.83569 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.44 8.65 113.37 0.98 3.43 16 2 Si 1.20 -7.27 14.26 68.60 0.98 -6.29 16 3 C -0.46 2.27 8.65 113.37 0.98 3.25 16 4 C -0.46 2.43 8.65 113.37 0.98 3.42 16 5 C -0.39 -1.36 12.15 74.32 0.90 -0.46 16 6 C -0.19 -1.40 13.24 30.01 0.40 -1.01 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 8 C -0.11 -0.22 9.75 22.52 0.22 0.00 16 9 C -0.09 0.12 9.68 22.23 0.22 0.34 16 10 C -0.10 0.18 5.25 -19.81 -0.10 0.07 16 11 C 0.16 -0.23 5.79 85.63 0.50 0.27 16 12 N -0.71 1.10 5.55 -470.44 -2.61 -1.51 16 13 C 0.59 2.95 7.80 86.56 0.68 3.63 16 14 O -0.56 -7.08 16.84 -4.16 -0.07 -7.15 16 15 C 0.01 0.04 6.97 39.91 0.28 0.32 16 16 C -0.11 -0.72 10.53 22.55 0.24 -0.48 16 17 C -0.14 -0.81 6.16 -21.36 -0.13 -0.94 16 18 C -0.06 -0.23 10.06 22.30 0.22 -0.01 16 19 C -0.16 -0.54 8.59 22.02 0.19 -0.35 16 20 C -0.06 -0.15 5.39 -19.83 -0.11 -0.26 16 21 C -0.08 0.16 2.78 71.24 0.20 0.35 16 22 O -0.56 0.60 12.80 -148.98 -1.91 -1.31 16 23 Si 0.98 -1.66 25.11 68.60 1.72 0.06 16 24 H -0.27 -0.58 7.03 99.48 0.70 0.12 16 25 H -0.26 0.07 7.11 99.48 0.71 0.78 16 26 H -0.26 0.55 7.11 99.48 0.71 1.25 16 27 C -0.11 -0.24 9.69 22.37 0.22 -0.02 16 28 C 0.11 0.41 7.25 39.14 0.28 0.69 16 29 N -0.56 0.08 6.07 -177.18 -1.08 -1.00 16 30 C -0.09 0.11 9.68 22.23 0.22 0.32 16 31 C -0.11 -0.24 9.75 22.52 0.22 -0.02 16 32 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 33 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 34 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 35 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 36 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 37 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 38 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 39 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 40 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 41 H 0.13 0.03 8.06 -2.91 -0.02 0.01 16 42 H 0.15 -0.71 8.06 -2.91 -0.02 -0.74 16 43 H 0.08 -0.06 8.08 -2.39 -0.02 -0.07 16 44 H 0.08 -0.04 8.08 -2.38 -0.02 -0.06 16 45 H 0.41 -2.58 7.52 -92.71 -0.70 -3.28 16 46 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 47 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 48 H 0.13 0.10 4.80 -2.91 -0.01 0.08 16 49 H 0.10 -0.65 7.96 -2.39 -0.02 -0.67 16 50 H 0.40 -4.01 8.74 -74.05 -0.65 -4.66 16 51 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 52 H 0.43 -2.89 8.12 -92.71 -0.75 -3.64 16 53 H 0.15 -0.66 8.06 -2.91 -0.02 -0.68 16 54 H 0.13 0.06 8.06 -2.91 -0.02 0.04 16 Total: 0.00 -23.76 465.44 4.09 -19.67 By element: Atomic # 1 Polarization: -14.45 SS G_CDS: -0.39 Total: -14.84 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 7.45 Total: 12.38 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -3.68 Total: -2.51 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -1.98 Total: -8.46 kcal Atomic # 14 Polarization: -8.93 SS G_CDS: 2.70 Total: -6.23 kcal Total: -23.76 4.09 -19.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13158378.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.976 kcal (2) G-P(sol) polarization free energy of solvation -23.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds