Wall clock time and date at job start Sun Mar 7 2021 03:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86308 * 1 3 3 C 1.86292 * 109.47024 * 2 1 4 4 C 1.86301 * 109.47040 * 240.00156 * 2 1 3 5 5 C 1.90002 * 109.47135 * 120.00254 * 2 1 3 6 6 C 3.07400 * 109.47211 * 120.00161 * 2 1 3 7 7 C 4.50597 * 109.47154 * 120.00206 * 2 1 3 8 8 C 1.39544 * 120.14090 * 137.67112 * 7 6 5 9 9 C 1.37966 * 119.85562 * 180.02562 * 8 7 6 10 10 C 1.38341 * 120.14491 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.85801 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46931 * 90.00091 * 11 10 9 13 13 C 1.34777 * 119.99880 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00178 * 0.26797 * 13 12 11 15 15 C 1.47656 * 120.00097 * 179.97438 * 13 12 11 16 16 C 1.40160 * 119.97078 * 359.97438 * 15 13 12 17 17 C 1.36357 * 120.66537 * 179.97438 * 16 15 13 18 18 C 1.39326 * 120.24055 * 0.02562 * 17 16 15 19 19 N 1.37399 * 133.25327 * 180.02562 * 18 17 16 20 20 C 1.36867 * 109.97988 * 180.02562 * 19 18 17 21 21 C 1.34189 * 109.96638 * 359.97438 * 20 19 18 22 22 C 1.50701 * 126.53630 * 179.97438 * 21 20 19 23 23 O 1.42901 * 109.47099 * 104.97579 * 22 21 20 24 24 Si 1.86296 * 109.47284 * 344.97699 * 22 21 20 25 25 H 1.48497 * 109.47268 * 60.00211 * 24 22 21 26 26 H 1.48499 * 109.47118 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47234 * 299.99790 * 24 22 21 28 28 C 1.40906 * 119.63945 * 0.02562 * 18 17 16 29 29 C 1.39189 * 119.97174 * 179.72179 * 15 13 12 30 30 C 1.38344 * 120.28529 * 0.25032 * 10 9 8 31 31 C 1.37969 * 120.14310 * 359.44959 * 30 10 9 32 32 H 1.09002 * 109.46898 * 299.99691 * 1 2 3 33 33 H 1.08997 * 109.46839 * 60.00162 * 1 2 3 34 34 H 1.08999 * 109.46800 * 180.02562 * 1 2 3 35 35 H 1.09007 * 109.47219 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47761 * 299.99995 * 3 2 1 37 37 H 1.09002 * 109.47031 * 60.00390 * 3 2 1 38 38 H 1.09011 * 109.47162 * 300.00041 * 4 2 1 39 39 H 1.08997 * 109.47305 * 59.99641 * 4 2 1 40 40 H 1.08997 * 109.47116 * 179.97438 * 4 2 1 41 41 H 1.07998 * 120.06669 * 359.97438 * 8 7 6 42 42 H 1.08003 * 119.92650 * 179.97438 * 9 8 7 43 43 H 1.08993 * 109.47512 * 330.00035 * 11 10 9 44 44 H 1.09000 * 109.47247 * 209.99744 * 11 10 9 45 45 H 0.96999 * 120.00076 * 359.97438 * 12 11 10 46 46 H 1.08003 * 119.66897 * 359.97438 * 16 15 13 47 47 H 1.08001 * 119.88115 * 180.02562 * 17 16 15 48 48 H 0.97006 * 125.00834 * 0.02562 * 19 18 17 49 49 H 1.07998 * 125.01143 * 179.97438 * 20 19 18 50 50 H 1.08993 * 109.47484 * 224.97410 * 22 21 20 51 51 H 0.96701 * 113.99778 * 300.00481 * 23 22 21 52 52 H 1.08001 * 120.30765 * 359.97438 * 29 15 13 53 53 H 1.08007 * 119.93221 * 179.71081 * 30 10 9 54 54 H 1.07999 * 120.07910 * 180.24744 * 31 30 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5212 5 6 2.4964 -0.8957 1.5513 6 6 2.8878 -1.4492 2.5099 7 6 3.3651 -2.1243 3.6790 8 6 4.7101 -2.4813 3.7819 9 6 5.1636 -3.1321 4.9108 10 6 4.2879 -3.4312 5.9392 11 6 4.7900 -4.1427 7.1691 12 7 5.2306 -3.1559 8.1583 13 6 5.7222 -3.5645 9.3449 14 8 5.8045 -4.7520 9.5925 15 6 6.1668 -2.5701 10.3417 16 6 6.0779 -1.2014 10.0531 17 6 6.4839 -0.2709 10.9635 18 6 6.9946 -0.6716 12.1963 19 7 7.4703 0.0159 13.2867 20 6 7.8611 -0.8635 14.2599 21 6 7.6576 -2.1240 13.8471 22 6 7.9566 -3.3813 14.6223 23 8 6.7358 -3.9430 15.1081 24 14 9.0685 -2.9744 16.0606 25 1 8.3916 -1.9950 16.9480 26 1 9.3626 -4.2132 16.8248 27 1 10.3372 -2.3907 15.5558 28 6 7.0901 -2.0446 12.4980 29 6 6.6689 -2.9926 11.5692 30 6 2.9521 -3.0850 5.8409 31 6 2.4871 -2.4285 4.7201 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 3.5741 1.7564 -0.0005 36 1 2.1207 2.2703 -0.8900 37 1 2.1207 2.2702 0.8900 38 1 2.1207 -1.9060 -1.5212 39 1 2.1207 -0.3644 -2.4111 40 1 3.5740 -0.8778 -1.5214 41 1 5.3944 -2.2495 2.9792 42 1 6.2043 -3.4093 4.9915 43 1 5.6274 -4.7863 6.9001 44 1 3.9879 -4.7477 7.5918 45 1 5.1693 -2.2086 7.9590 46 1 5.6838 -0.8805 9.1001 47 1 6.4093 0.7805 10.7280 48 1 7.5217 0.9821 13.3563 49 1 8.2724 -0.5841 15.2186 50 1 8.4535 -4.1002 13.9710 51 1 6.2394 -3.3567 15.6955 52 1 6.7350 -4.0461 11.7976 53 1 2.2725 -3.3255 6.6452 54 1 1.4449 -2.1552 4.6462 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13287722.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:47:16 Heat of formation + Delta-G solvation = 16.563306 kcal Electronic energy + Delta-G solvation = -32554.196688 eV Core-core repulsion = 28159.506880 eV Total energy + Delta-G solvation = -4394.689808 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 406.163 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.47619 -41.08452 -40.24659 -37.96895 -37.44216 -36.41759 -34.40936 -33.27988 -32.10527 -31.90815 -30.76665 -30.38881 -29.45368 -28.28557 -28.28190 -27.42089 -26.46051 -24.60290 -23.76740 -23.50921 -22.86020 -21.60904 -20.79599 -19.53813 -19.38376 -18.68176 -17.73182 -17.44124 -16.92466 -16.82431 -16.45790 -16.19083 -15.99736 -15.89085 -15.78202 -15.43313 -15.14166 -14.87095 -14.80461 -14.54781 -14.53910 -14.41796 -14.17013 -14.11636 -13.89891 -13.84035 -13.78987 -13.77798 -13.63296 -13.16531 -13.15845 -12.98448 -12.64038 -12.62340 -12.41168 -12.37546 -12.24716 -12.20791 -12.00032 -11.96659 -11.72115 -11.61251 -11.19799 -10.81385 -10.79561 -10.64169 -10.29842 -10.27512 -10.06870 -9.52840 -9.35130 -8.82487 -0.30197 -0.16467 0.18099 0.29503 1.22424 1.38237 1.45970 1.50945 1.55587 1.61614 1.70398 1.82259 1.98256 2.07272 2.10498 2.39158 2.44445 2.47725 2.87483 2.98902 3.48318 3.60878 3.64479 3.74214 3.76476 3.83237 3.85765 3.89270 3.91568 4.12043 4.26571 4.30391 4.36822 4.45789 4.50499 4.59376 4.60056 4.63753 4.81517 4.82795 4.83812 4.84002 4.86899 4.89717 4.89899 4.92615 4.97046 5.00622 5.18218 5.24902 5.25952 5.33658 5.38455 5.44167 5.47423 5.57195 5.58698 5.68220 5.68571 5.80091 5.96489 6.44281 6.55435 6.57259 6.81443 7.12547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.200 2.800 3 C -0.461 4.461 4 C -0.463 4.463 5 C -0.391 4.391 6 C -0.190 4.190 7 C -0.008 4.008 8 C -0.107 4.107 9 C -0.095 4.095 10 C -0.099 4.099 11 C 0.164 3.836 12 N -0.709 5.709 13 C 0.562 3.438 14 O -0.584 6.584 15 C -0.179 4.179 16 C -0.067 4.067 17 C -0.126 4.126 18 C 0.111 3.889 19 N -0.572 5.572 20 C 0.069 3.931 21 C -0.217 4.217 22 C -0.060 4.060 23 O -0.561 6.561 24 Si 0.997 3.003 25 H -0.231 1.231 26 H -0.280 1.280 27 H -0.255 1.255 28 C -0.126 4.126 29 C -0.016 4.016 30 C -0.095 4.095 31 C -0.107 4.107 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.413 0.587 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.438 0.562 49 H 0.205 0.795 50 H 0.100 0.900 51 H 0.387 0.613 52 H 0.113 0.887 53 H 0.145 0.855 54 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 10.178 -1.066 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.381 2.619 3 C -0.568 4.568 4 C -0.570 4.570 5 C -0.422 4.422 6 C -0.190 4.190 7 C -0.009 4.009 8 C -0.125 4.125 9 C -0.113 4.113 10 C -0.099 4.099 11 C 0.041 3.959 12 N -0.362 5.362 13 C 0.352 3.648 14 O -0.466 6.466 15 C -0.184 4.184 16 C -0.087 4.087 17 C -0.147 4.147 18 C 0.001 3.999 19 N -0.176 5.176 20 C -0.058 4.058 21 C -0.225 4.225 22 C -0.169 4.169 23 O -0.368 6.368 24 Si 0.819 3.181 25 H -0.153 1.153 26 H -0.205 1.205 27 H -0.179 1.179 28 C -0.131 4.131 29 C -0.036 4.036 30 C -0.113 4.113 31 C -0.125 4.125 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.251 0.749 46 H 0.173 0.827 47 H 0.177 0.823 48 H 0.279 0.721 49 H 0.221 0.779 50 H 0.118 0.882 51 H 0.236 0.764 52 H 0.131 0.869 53 H 0.163 0.837 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.716 9.103 -0.406 9.140 hybrid contribution -0.363 0.377 0.049 0.525 sum 0.353 9.480 -0.357 9.493 Atomic orbital electron populations 1.26221 1.20450 1.04881 1.05404 0.76308 0.64986 0.63467 0.57100 1.26209 1.06612 1.18629 1.05393 1.26234 1.06620 1.08472 1.15702 1.37484 0.99409 1.00356 1.04977 1.21573 1.01007 1.00123 0.96325 1.16517 0.94234 0.98768 0.91353 1.21381 0.94140 0.98224 0.98767 1.21208 1.00612 0.97156 0.92358 1.19906 0.94072 1.00291 0.95676 1.20168 1.00059 0.90292 0.85356 1.45819 1.64266 1.11134 1.14955 1.18453 0.76468 0.87842 0.82057 1.90776 1.57259 1.19186 1.79369 1.19550 1.09323 0.94076 0.95422 1.20844 0.97667 0.90138 1.00003 1.20025 1.02568 1.01495 0.90580 1.18635 0.99583 0.90988 0.90671 1.41751 1.53833 1.09908 1.12092 1.22152 1.00425 0.88081 0.95143 1.20897 1.10861 0.95491 0.95210 1.24591 0.93306 0.94172 1.04870 1.86509 1.36187 1.45517 1.68598 0.85085 0.77651 0.79884 0.75521 1.15337 1.20509 1.17877 1.19166 1.05637 0.92590 0.95665 1.20619 0.92831 0.99007 0.91121 1.21211 0.95310 0.96952 0.97876 1.21379 0.99948 0.98388 0.92798 0.91140 0.89245 0.91289 0.91178 0.89235 0.91166 0.91334 0.89245 0.91191 0.84744 0.83652 0.90550 0.90590 0.74892 0.82732 0.82320 0.72109 0.77852 0.88209 0.76432 0.86871 0.83678 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.23 8.65 113.37 0.98 3.21 16 2 Si 1.20 -6.81 14.26 68.60 0.98 -5.83 16 3 C -0.46 2.35 8.65 113.37 0.98 3.33 16 4 C -0.46 2.13 8.65 113.37 0.98 3.11 16 5 C -0.39 -1.58 12.14 74.32 0.90 -0.68 16 6 C -0.19 -1.52 13.24 30.01 0.40 -1.13 16 7 C -0.01 -0.05 5.72 -21.40 -0.12 -0.18 16 8 C -0.11 -0.36 9.75 22.52 0.22 -0.14 16 9 C -0.10 -0.07 9.68 22.23 0.22 0.15 16 10 C -0.10 -0.07 5.25 -19.81 -0.10 -0.17 16 11 C 0.16 0.37 5.79 85.63 0.50 0.86 16 12 N -0.71 -1.58 5.50 -469.88 -2.58 -4.16 16 13 C 0.56 5.30 7.76 86.73 0.67 5.97 16 14 O -0.58 -10.66 16.33 -3.98 -0.06 -10.73 16 15 C -0.18 -1.23 5.87 -20.09 -0.12 -1.35 16 16 C -0.07 0.02 9.46 22.30 0.21 0.23 16 17 C -0.13 0.25 10.00 22.09 0.22 0.47 16 18 C 0.11 0.11 7.27 39.19 0.28 0.40 16 19 N -0.57 2.73 6.05 -187.49 -1.13 1.60 16 20 C 0.07 -0.27 10.43 82.98 0.87 0.60 16 21 C -0.22 -0.51 5.58 -18.61 -0.10 -0.61 16 22 C -0.06 -0.12 3.06 71.24 0.22 0.09 16 23 O -0.56 -2.56 12.88 -148.98 -1.92 -4.48 16 24 Si 1.00 -2.44 26.09 68.60 1.79 -0.65 16 25 H -0.23 1.41 7.03 99.48 0.70 2.11 16 26 H -0.28 -0.69 7.11 99.48 0.71 0.02 16 27 H -0.26 0.46 7.11 99.48 0.71 1.16 16 28 C -0.13 -0.81 6.34 -20.21 -0.13 -0.93 16 29 C -0.02 -0.16 9.64 22.74 0.22 0.06 16 30 C -0.10 -0.07 9.68 22.23 0.22 0.14 16 31 C -0.11 -0.37 9.75 22.52 0.22 -0.15 16 32 H 0.07 -0.29 7.96 -2.39 -0.02 -0.30 16 33 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 34 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 36 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 37 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 38 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 39 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 40 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.13 0.17 8.06 -2.91 -0.02 0.15 16 42 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 43 H 0.08 0.26 8.08 -2.39 -0.02 0.25 16 44 H 0.08 0.27 8.08 -2.39 -0.02 0.25 16 45 H 0.41 -1.27 6.47 -92.71 -0.60 -1.87 16 46 H 0.16 -1.04 6.36 -2.91 -0.02 -1.06 16 47 H 0.16 -1.35 8.06 -2.91 -0.02 -1.38 16 48 H 0.44 -5.15 8.96 -92.70 -0.83 -5.98 16 49 H 0.20 -2.21 6.30 -2.91 -0.02 -2.22 16 50 H 0.10 0.39 7.96 -2.39 -0.02 0.37 16 51 H 0.39 -1.29 8.70 -74.06 -0.64 -1.94 16 52 H 0.11 1.60 7.64 -2.91 -0.02 1.58 16 53 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 54 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 Total: 0.00 -28.22 465.26 4.42 -23.80 By element: Atomic # 1 Polarization: -12.48 SS G_CDS: -0.37 Total: -12.85 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 7.72 Total: 13.30 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -3.72 Total: -2.56 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.98 Total: -15.20 kcal Atomic # 14 Polarization: -9.25 SS G_CDS: 2.77 Total: -6.48 kcal Total: -28.22 4.42 -23.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13287722.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.362 kcal (2) G-P(sol) polarization free energy of solvation -28.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds