Wall clock time and date at job start Sun Mar 7 2021 03:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21508 * 120.00087 * 0.02562 * 13 12 11 15 15 C 1.48168 * 119.99374 * 179.97438 * 13 12 11 16 16 C 1.39268 * 119.72291 * 180.02562 * 15 13 12 17 17 C 1.38630 * 119.06547 * 179.97438 * 16 15 13 18 18 C 1.38586 * 118.48496 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.32067 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.47201 * 65.00023 * 19 18 17 21 21 Si 1.86303 * 109.46891 * 184.99927 * 19 18 17 22 22 H 1.48497 * 109.47014 * 60.00235 * 21 19 18 23 23 H 1.48504 * 109.47011 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47212 * 299.99840 * 21 19 18 25 25 C 1.38603 * 119.35267 * 0.02562 * 18 17 16 26 26 N 1.31490 * 120.89798 * 359.74472 * 25 18 17 27 27 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 28 28 C 1.37976 * 120.14217 * 0.02562 * 27 10 9 29 29 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 30 30 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 31 31 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 34 34 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 35 35 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 36 36 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 37 37 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 38 38 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 39 39 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 40 40 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 41 41 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 42 42 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 43 43 H 1.08004 * 120.46558 * 359.95688 * 16 15 13 44 44 H 1.08004 * 120.75656 * 180.02562 * 17 16 15 45 45 H 1.09004 * 109.47540 * 304.99506 * 19 18 17 46 46 H 0.96698 * 113.99923 * 60.00435 * 20 19 18 47 47 H 1.07998 * 119.54704 * 180.02562 * 25 18 17 48 48 H 1.07999 * 119.93193 * 179.97438 * 27 10 9 49 49 H 1.08003 * 120.07184 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0654 -5.7506 9.3159 15 6 3.0184 -6.8695 9.1417 16 6 3.2664 -7.6505 10.2679 17 6 2.3130 -8.5724 10.6713 18 6 1.1444 -8.6804 9.9342 19 6 0.0800 -9.6686 10.3361 20 8 -0.4582 -9.2984 11.6071 21 14 -1.2795 -9.6692 9.0623 22 1 -0.7202 -10.0539 7.7416 23 1 -2.3282 -10.6434 9.4580 24 1 -1.8736 -8.3113 8.9718 25 6 0.9643 -7.8707 8.8238 26 7 1.8834 -7.0012 8.4659 27 6 3.5437 -2.2708 6.0695 28 6 3.0807 -1.6156 4.9469 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5739 1.7566 0.0005 33 1 2.1205 2.2703 -0.8900 34 1 2.1206 2.2703 0.8900 35 1 2.1207 -1.9058 -1.5212 36 1 2.1207 -0.3643 -2.4111 37 1 3.5740 -0.8777 -1.5214 38 1 4.3313 -3.6977 2.5772 39 1 5.1551 -4.8441 4.5914 40 1 5.7241 -4.6519 6.9391 41 1 4.9599 -3.4146 7.9655 42 1 2.9639 -5.2230 7.1154 43 1 4.1887 -7.5396 10.8189 44 1 2.4768 -9.1918 11.5408 45 1 0.5160 -10.6654 10.4026 46 1 -0.8636 -8.4206 11.6219 47 1 0.0546 -7.9520 8.2474 48 1 3.3239 -1.8784 7.0514 49 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13287726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:47:34 Heat of formation + Delta-G solvation = -3.610634 kcal Electronic energy + Delta-G solvation = -27803.204642 eV Core-core repulsion = 23819.629926 eV Total energy + Delta-G solvation = -3983.574716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 368.147 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.93389 -40.78297 -40.03902 -37.87809 -36.49172 -34.53601 -33.75766 -33.02988 -32.12712 -31.55637 -29.46876 -28.38795 -28.29278 -28.29269 -26.82734 -25.08353 -23.88555 -23.79550 -22.87496 -21.89612 -19.58765 -19.51562 -18.70557 -17.86921 -16.95235 -16.94138 -16.87250 -16.52439 -16.28992 -16.06977 -15.99750 -15.91609 -15.11738 -14.89001 -14.70403 -14.51546 -14.44728 -14.31295 -14.14669 -14.11513 -13.89657 -13.84511 -13.71639 -13.58989 -13.17123 -13.16983 -12.99423 -12.67160 -12.55548 -12.40613 -12.24746 -12.18117 -12.07413 -12.01146 -11.62896 -11.54971 -11.07270 -10.82194 -10.68961 -10.65196 -10.56494 -10.42126 -10.17749 -10.08505 -9.55056 -0.62742 -0.32437 0.05159 0.27453 1.11906 1.37125 1.44509 1.48264 1.52435 1.53308 1.69464 1.92286 1.96899 2.38008 2.38292 2.46763 2.62863 2.88860 2.99946 3.41836 3.45951 3.52192 3.63337 3.73758 3.77778 3.81434 3.88944 3.93161 4.11714 4.23550 4.27788 4.46648 4.53916 4.56580 4.60867 4.79441 4.82919 4.83092 4.85928 4.87187 4.88896 4.88951 4.91673 4.94415 4.97898 5.14972 5.18031 5.36162 5.36449 5.40940 5.57800 5.67457 5.67563 5.77966 6.19227 6.54756 6.55807 6.64126 6.94898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.202 2.798 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.390 4.390 6 C -0.192 4.192 7 C -0.008 4.008 8 C -0.109 4.109 9 C -0.095 4.095 10 C -0.102 4.102 11 C 0.162 3.838 12 N -0.698 5.698 13 C 0.570 3.430 14 O -0.562 6.562 15 C 0.061 3.939 16 C -0.112 4.112 17 C -0.047 4.047 18 C -0.141 4.141 19 C -0.073 4.073 20 O -0.547 6.547 21 Si 0.971 3.029 22 H -0.254 1.254 23 H -0.269 1.269 24 H -0.246 1.246 25 C 0.088 3.912 26 N -0.464 5.464 27 C -0.095 4.095 28 C -0.109 4.109 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.417 0.583 43 H 0.153 0.847 44 H 0.169 0.831 45 H 0.138 0.862 46 H 0.391 0.609 47 H 0.173 0.827 48 H 0.146 0.854 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 -0.040 -2.849 4.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.384 2.616 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.421 4.421 6 C -0.192 4.192 7 C -0.009 4.009 8 C -0.127 4.127 9 C -0.113 4.113 10 C -0.102 4.102 11 C 0.040 3.960 12 N -0.349 5.349 13 C 0.356 3.644 14 O -0.441 6.441 15 C -0.076 4.076 16 C -0.133 4.133 17 C -0.073 4.073 18 C -0.144 4.144 19 C -0.184 4.184 20 O -0.354 6.354 21 Si 0.794 3.206 22 H -0.177 1.177 23 H -0.194 1.194 24 H -0.170 1.170 25 C -0.072 4.072 26 N -0.175 5.175 27 C -0.113 4.113 28 C -0.126 4.126 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.255 0.745 43 H 0.171 0.829 44 H 0.187 0.813 45 H 0.155 0.845 46 H 0.240 0.760 47 H 0.190 0.810 48 H 0.164 0.836 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.736 -0.019 -3.483 5.107 hybrid contribution 0.224 -0.148 0.957 0.994 sum -3.512 -0.167 -2.526 4.329 Atomic orbital electron populations 1.26223 1.20450 1.04887 1.05378 0.76275 0.64929 0.63340 0.57093 1.26228 1.06556 1.18821 1.05380 1.26219 1.06588 1.08522 1.15621 1.37515 0.99144 1.00390 1.05033 1.21573 1.01138 1.00155 0.96306 1.16525 0.98986 0.95241 0.90109 1.21387 0.97178 0.94193 0.99893 1.21218 0.99001 1.00049 0.91080 1.19922 0.99722 0.96305 0.94247 1.20280 0.91329 0.90740 0.93692 1.45884 1.22823 1.37772 1.28437 1.18065 0.85307 0.80471 0.80555 1.90796 1.27430 1.69413 1.56461 1.21073 0.93176 0.98072 0.95315 1.22331 1.01232 0.94276 0.95450 1.21790 0.90867 0.95608 0.99026 1.21777 0.97814 0.98624 0.96177 1.24992 0.99540 0.99673 0.94232 1.86531 1.78112 1.40487 1.30248 0.85358 0.77249 0.81194 0.76760 1.17747 1.19416 1.16985 1.22984 0.97954 0.91280 0.95008 1.67478 1.01049 1.19044 1.29978 1.21219 0.96268 0.94582 0.99262 1.21389 0.99864 1.00431 0.90964 0.91216 0.89220 0.91254 0.91294 0.89213 0.91221 0.91198 0.89225 0.91233 0.84749 0.83626 0.89889 0.89878 0.74522 0.82934 0.81343 0.84472 0.75978 0.81044 0.83607 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.11 8.65 113.37 0.98 3.09 16 2 Si 1.20 -6.48 14.26 68.60 0.98 -5.50 16 3 C -0.46 2.05 8.65 113.37 0.98 3.04 16 4 C -0.46 2.12 8.65 113.37 0.98 3.10 16 5 C -0.39 -1.76 12.14 74.32 0.90 -0.86 16 6 C -0.19 -1.66 13.24 30.02 0.40 -1.27 16 7 C -0.01 -0.06 5.72 -21.41 -0.12 -0.18 16 8 C -0.11 -0.46 9.75 22.52 0.22 -0.24 16 9 C -0.10 -0.14 9.68 22.23 0.22 0.08 16 10 C -0.10 -0.12 5.25 -19.81 -0.10 -0.23 16 11 C 0.16 0.24 5.79 85.63 0.50 0.74 16 12 N -0.70 -2.13 5.54 -469.39 -2.60 -4.73 16 13 C 0.57 4.19 7.81 86.88 0.68 4.87 16 14 O -0.56 -7.37 16.32 -3.74 -0.06 -7.43 16 15 C 0.06 0.30 6.75 41.89 0.28 0.58 16 16 C -0.11 -0.23 9.63 22.61 0.22 -0.01 16 17 C -0.05 0.10 9.83 22.45 0.22 0.32 16 18 C -0.14 0.40 5.37 -19.70 -0.11 0.29 16 19 C -0.07 0.42 2.82 71.23 0.20 0.62 16 20 O -0.55 2.23 12.84 -148.98 -1.91 0.31 16 21 Si 0.97 -4.92 25.16 68.60 1.73 -3.19 16 22 H -0.25 0.93 7.11 99.48 0.71 1.63 16 23 H -0.27 0.31 7.11 99.48 0.71 1.02 16 24 H -0.25 1.28 7.04 99.48 0.70 1.98 16 25 C 0.09 -0.05 9.84 84.83 0.83 0.78 16 26 N -0.46 -1.56 9.54 -184.91 -1.76 -3.33 16 27 C -0.10 -0.13 9.68 22.23 0.22 0.08 16 28 C -0.11 -0.46 9.75 22.52 0.22 -0.24 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 31 H 0.07 -0.25 7.96 -2.38 -0.02 -0.26 16 32 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 33 H 0.09 -0.59 7.96 -2.39 -0.02 -0.61 16 34 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 35 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 36 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 37 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 38 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 39 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 40 H 0.08 0.14 8.08 -2.39 -0.02 0.12 16 41 H 0.08 0.14 8.08 -2.39 -0.02 0.12 16 42 H 0.42 0.60 7.79 -92.71 -0.72 -0.12 16 43 H 0.15 0.26 7.64 -2.91 -0.02 0.24 16 44 H 0.17 -1.03 8.06 -2.91 -0.02 -1.06 16 45 H 0.14 -1.11 7.96 -2.38 -0.02 -1.13 16 46 H 0.39 -3.93 8.70 -74.06 -0.64 -4.58 16 47 H 0.17 -0.75 4.88 -2.91 -0.01 -0.76 16 48 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 49 H 0.13 0.28 8.06 -2.91 -0.02 0.25 16 Total: 0.00 -19.89 429.04 4.44 -15.44 By element: Atomic # 1 Polarization: -6.51 SS G_CDS: 0.37 Total: -6.14 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 7.71 Total: 14.56 kcal Atomic # 7 Polarization: -3.69 SS G_CDS: -4.36 Total: -8.05 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -1.97 Total: -7.12 kcal Atomic # 14 Polarization: -11.40 SS G_CDS: 2.70 Total: -8.69 kcal Total: -19.89 4.44 -15.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13287726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.833 kcal (2) G-P(sol) polarization free energy of solvation -19.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds