Wall clock time and date at job start Sun Mar 7 2021 03:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34664 * 124.84980 * 2 1 4 4 C 1.36774 * 108.39265 * 179.82889 * 3 2 1 5 5 C 1.47262 * 126.93802 * 180.15993 * 4 3 2 6 6 O 1.21636 * 119.99886 * 180.30570 * 5 4 3 7 7 N 1.34773 * 120.00078 * 0.30550 * 5 4 3 8 8 C 1.46506 * 119.99745 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46824 * 179.97438 * 8 7 5 10 10 C 1.38354 * 119.85546 * 269.72274 * 9 8 7 11 11 C 1.37964 * 120.13810 * 179.76508 * 10 9 8 12 12 C 1.39534 * 119.86049 * 0.51163 * 11 10 9 13 13 C 1.43198 * 120.14405 * 179.72121 * 12 11 10 14 14 C 9.39934 * 125.43741 * 180.40777 * 3 1 2 15 15 Si 9.37331 * 114.05262 * 179.97438 * 7 1 2 16 16 C 1.86306 * 109.47088 * 251.02828 * 15 14 13 17 17 C 1.86298 * 109.47266 * 11.02673 * 15 14 13 18 18 C 1.86297 * 109.47378 * 131.02681 * 15 14 13 19 19 C 1.39543 * 119.71373 * 359.74526 * 12 11 10 20 20 C 1.37970 * 119.85795 * 359.97438 * 19 12 11 21 21 C 1.46686 * 106.11767 * 0.41460 * 4 3 2 22 22 C 1.34489 * 106.33410 * 359.74157 * 21 4 3 23 23 C 1.50694 * 125.57301 * 180.02562 * 22 21 4 24 24 O 1.42902 * 109.47212 * 149.97865 * 23 22 21 25 25 Si 1.86303 * 109.46969 * 29.97985 * 23 22 21 26 26 H 1.48495 * 109.47041 * 60.00254 * 25 23 22 27 27 H 1.48504 * 109.46709 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46972 * 299.99709 * 25 23 22 29 29 H 1.09002 * 109.47391 * 269.69950 * 1 2 3 30 30 H 1.09001 * 109.46813 * 149.70006 * 1 2 3 31 31 H 1.09004 * 109.47041 * 29.70134 * 1 2 3 32 32 H 1.07997 * 125.80164 * 359.97438 * 3 2 1 33 33 H 0.96993 * 120.00223 * 0.02562 * 7 5 4 34 34 H 1.08994 * 109.47470 * 299.99917 * 8 7 5 35 35 H 1.09006 * 109.46873 * 59.99986 * 8 7 5 36 36 H 1.08005 * 119.92353 * 0.02562 * 10 9 8 37 37 H 1.08003 * 120.06932 * 180.23569 * 11 10 9 38 38 H 1.09001 * 109.46832 * 59.99818 * 16 15 14 39 39 H 1.08993 * 109.47246 * 180.02562 * 16 15 14 40 40 H 1.09004 * 109.46722 * 300.00309 * 16 15 14 41 41 H 1.08995 * 109.47329 * 60.00264 * 17 15 14 42 42 H 1.09000 * 109.47308 * 180.02562 * 17 15 14 43 43 H 1.09005 * 109.47445 * 300.00084 * 17 15 14 44 44 H 1.09004 * 109.46821 * 59.99453 * 18 15 14 45 45 H 1.09000 * 109.47755 * 179.97438 * 18 15 14 46 46 H 1.09000 * 109.47240 * 300.00121 * 18 15 14 47 47 H 1.07998 * 120.06928 * 179.97438 * 19 12 11 48 48 H 1.08000 * 119.92957 * 179.97438 * 20 19 12 49 49 H 1.07996 * 126.83688 * 179.74874 * 21 4 3 50 50 H 1.09002 * 109.46981 * 269.97873 * 23 22 21 51 51 H 0.96705 * 114.00053 * 300.00235 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7177 0.0039 5 6 4.7284 1.5958 0.0086 6 8 5.8447 1.1128 0.0061 7 7 4.5733 2.9345 0.0156 8 6 5.7495 3.8081 0.0208 9 6 5.3055 5.2482 0.0276 10 6 5.1091 5.9140 -1.1692 11 6 4.6980 7.2310 -1.1698 12 6 4.4906 7.8946 0.0399 13 6 4.0697 9.2633 0.0464 14 6 3.7247 10.3854 0.0545 15 14 3.1661 12.2015 0.0610 16 6 2.4394 12.6218 1.7242 17 6 4.6310 13.3030 -0.2729 18 6 1.8802 12.4605 -1.2620 19 6 4.6957 7.2189 1.2435 20 6 5.1012 5.9003 1.2305 21 6 3.5375 -0.7492 -0.0038 22 6 2.2447 -1.1198 -0.0058 23 6 1.7398 -2.5396 -0.0127 24 8 0.4810 -2.6008 0.6610 25 14 2.9651 -3.6387 0.8599 26 1 3.1312 -3.1792 2.2622 27 1 2.4672 -5.0377 0.8536 28 1 4.2732 -3.5751 0.1598 29 1 -0.3634 -0.0054 1.0276 30 1 -0.3633 -0.8873 -0.5185 31 1 -0.3633 0.8927 -0.5092 32 1 1.8767 2.1241 -0.0004 33 1 3.6832 3.3197 0.0179 34 1 6.3471 3.6076 0.9100 35 1 6.3480 3.6169 -0.8700 36 1 5.2739 5.4003 -2.1049 37 1 4.5413 7.7485 -2.1048 38 1 3.1918 12.4703 2.4981 39 1 2.1186 13.6634 1.7277 40 1 1.5823 11.9773 1.9195 41 1 5.0562 13.0572 -1.2459 42 1 4.3107 14.3448 -0.2687 43 1 5.3835 13.1515 0.5012 44 1 1.0231 11.8160 -1.0666 45 1 1.5595 13.5022 -1.2580 46 1 2.3054 12.2146 -2.2350 47 1 4.5373 7.7272 2.1832 48 1 5.2607 5.3763 2.1613 49 1 4.3980 -1.4017 -0.0072 50 1 1.6178 -2.8768 -1.0420 51 1 0.5145 -2.3143 1.5840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13287730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:47:46 Heat of formation + Delta-G solvation = 5.876636 kcal Electronic energy + Delta-G solvation = -28569.366454 eV Core-core repulsion = 24558.891659 eV Total energy + Delta-G solvation = -4010.474795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.163 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.47627 -40.81805 -39.93551 -37.73668 -36.31683 -34.40241 -33.74417 -32.10282 -32.00436 -31.02591 -29.45791 -28.28701 -28.28284 -28.07284 -26.98224 -26.01619 -23.76295 -23.75041 -22.74109 -21.11514 -20.53118 -19.53702 -19.19727 -17.56344 -17.16192 -17.03756 -16.87642 -16.66202 -16.09091 -15.93171 -15.81642 -15.71957 -15.40707 -14.84458 -14.81555 -14.53473 -14.45306 -14.33026 -14.13565 -14.09496 -13.89520 -13.83040 -13.74661 -13.45004 -13.22890 -13.16498 -13.16241 -13.06697 -12.98552 -12.62138 -12.40359 -12.37568 -12.20760 -12.07252 -11.99490 -11.92914 -11.61256 -11.17014 -10.79549 -10.73931 -10.64088 -10.23839 -10.06660 -9.60565 -9.52269 -9.23228 -0.29560 0.29640 0.69898 0.94130 1.34817 1.38380 1.47017 1.52087 1.56312 1.70437 1.87496 2.02845 2.17989 2.39383 2.47656 2.49996 2.50976 2.99651 3.34303 3.51170 3.58091 3.77088 3.82885 3.85757 3.91679 3.94933 4.27574 4.28523 4.32690 4.40988 4.48617 4.57193 4.60109 4.63990 4.80006 4.83509 4.83768 4.83994 4.86768 4.89534 4.89867 4.90745 4.92545 4.94875 4.97332 5.19187 5.33987 5.38687 5.45005 5.58609 5.60242 5.68072 5.68535 5.80416 5.94353 6.21988 6.54576 6.56757 6.57717 7.26732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.422 5.422 3 C 0.075 3.925 4 C -0.262 4.262 5 C 0.588 3.412 6 O -0.595 6.595 7 N -0.712 5.712 8 C 0.166 3.834 9 C -0.097 4.097 10 C -0.095 4.095 11 C -0.107 4.107 12 C -0.009 4.009 13 C -0.190 4.190 14 C -0.392 4.392 15 Si 1.201 2.799 16 C -0.461 4.461 17 C -0.464 4.464 18 C -0.461 4.461 19 C -0.107 4.107 20 C -0.095 4.095 21 C -0.173 4.173 22 C -0.016 4.016 23 C -0.042 4.042 24 O -0.544 6.544 25 Si 0.995 3.005 26 H -0.264 1.264 27 H -0.260 1.260 28 H -0.269 1.269 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.207 0.793 33 H 0.412 0.588 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.134 0.866 48 H 0.145 0.855 49 H 0.136 0.864 50 H 0.134 0.866 51 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 4.808 0.528 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.095 5.095 3 C -0.063 4.063 4 C -0.272 4.272 5 C 0.379 3.621 6 O -0.477 6.477 7 N -0.364 5.364 8 C 0.043 3.957 9 C -0.097 4.097 10 C -0.114 4.114 11 C -0.125 4.125 12 C -0.009 4.009 13 C -0.190 4.190 14 C -0.422 4.422 15 Si 1.382 2.618 16 C -0.569 4.569 17 C -0.571 4.571 18 C -0.569 4.569 19 C -0.125 4.125 20 C -0.113 4.113 21 C -0.197 4.197 22 C -0.126 4.126 23 C -0.153 4.153 24 O -0.350 6.350 25 Si 0.819 3.181 26 H -0.188 1.188 27 H -0.184 1.184 28 H -0.194 1.194 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.223 0.777 33 H 0.249 0.751 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.152 0.848 48 H 0.163 0.837 49 H 0.153 0.847 50 H 0.151 0.849 51 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.166 3.526 0.380 7.995 hybrid contribution 0.177 0.280 0.230 0.403 sum -6.989 3.807 0.610 7.982 Atomic orbital electron populations 1.22518 0.74021 1.06063 1.05288 1.43729 1.08246 1.04314 1.53256 1.22364 0.88904 0.93226 1.01785 1.20284 0.92337 0.93701 1.20880 1.17690 0.87870 0.81935 0.74604 1.90760 1.27776 1.76160 1.53021 1.45717 1.10333 1.04663 1.75662 1.20117 0.87774 0.84694 1.03131 1.19912 1.01164 0.95042 0.93628 1.21204 0.97759 0.93830 0.98564 1.21376 0.98985 0.94942 0.97220 1.16512 1.00769 0.88940 0.94713 1.21578 1.01289 0.94225 1.01944 1.37483 0.98951 1.07514 0.98298 0.76286 0.65235 0.53619 0.66610 1.26213 1.07133 1.06350 1.17205 1.26246 1.14735 1.10987 1.05131 1.26212 1.12178 1.05889 1.12601 1.21379 0.99015 0.94828 0.97294 1.21200 0.97765 0.93890 0.98482 1.21796 0.95705 0.93825 1.08362 1.20917 0.90066 0.90312 1.11324 1.24572 0.93501 0.93207 1.04012 1.86471 1.29035 1.89610 1.29930 0.85043 0.76423 0.77665 0.78987 1.18848 1.18368 1.19363 0.88914 0.88315 0.88070 0.77668 0.75137 0.90832 0.90859 0.83725 0.84787 0.91228 0.89261 0.91132 0.91285 0.89247 0.91327 0.91147 0.89252 0.91206 0.84779 0.83700 0.84655 0.84866 0.76115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.56 9.81 127.77 1.25 0.69 16 2 N -0.42 1.12 3.09 -533.23 -1.65 -0.52 16 3 C 0.07 -0.16 10.83 83.92 0.91 0.75 16 4 C -0.26 -1.55 6.29 -19.04 -0.12 -1.67 16 5 C 0.59 5.52 7.81 86.62 0.68 6.20 16 6 O -0.60 -11.25 16.97 -4.14 -0.07 -11.32 16 7 N -0.71 -1.24 5.54 -470.24 -2.60 -3.85 16 8 C 0.17 0.35 5.79 85.63 0.50 0.85 16 9 C -0.10 -0.03 5.25 -19.81 -0.10 -0.14 16 10 C -0.10 -0.04 9.68 22.23 0.22 0.18 16 11 C -0.11 -0.33 9.75 22.52 0.22 -0.11 16 12 C -0.01 -0.05 5.72 -21.41 -0.12 -0.18 16 13 C -0.19 -1.46 13.24 30.02 0.40 -1.07 16 14 C -0.39 -1.46 12.14 74.32 0.90 -0.56 16 15 Si 1.20 -7.14 14.26 68.60 0.98 -6.16 16 16 C -0.46 2.42 8.65 113.37 0.98 3.40 16 17 C -0.46 2.17 8.65 113.37 0.98 3.15 16 18 C -0.46 2.44 8.65 113.37 0.98 3.42 16 19 C -0.11 -0.32 9.75 22.52 0.22 -0.10 16 20 C -0.10 -0.03 9.68 22.23 0.22 0.18 16 21 C -0.17 -1.22 9.49 23.62 0.22 -0.99 16 22 C -0.02 -0.02 6.14 40.98 0.25 0.23 16 23 C -0.04 0.10 2.87 71.23 0.20 0.31 16 24 O -0.54 2.54 10.32 -148.98 -1.54 1.01 16 25 Si 1.00 0.15 26.56 68.60 1.82 1.97 16 26 H -0.26 -0.62 7.11 99.48 0.71 0.09 16 27 H -0.26 -0.38 7.11 99.48 0.71 0.33 16 28 H -0.27 -1.05 6.81 99.48 0.68 -0.38 16 29 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 30 H 0.10 -0.78 6.73 -2.39 -0.02 -0.80 16 31 H 0.10 -1.28 8.13 -2.38 -0.02 -1.30 16 32 H 0.21 -2.12 7.45 -2.91 -0.02 -2.14 16 33 H 0.41 -1.70 7.41 -92.71 -0.69 -2.38 16 34 H 0.07 0.27 8.08 -2.39 -0.02 0.25 16 35 H 0.07 0.27 8.08 -2.38 -0.02 0.25 16 36 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 37 H 0.13 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 40 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 41 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 42 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 43 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 44 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 45 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 46 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 47 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 48 H 0.15 -0.42 8.06 -2.91 -0.02 -0.45 16 49 H 0.14 1.26 6.69 -2.91 -0.02 1.24 16 50 H 0.13 -0.60 7.96 -2.39 -0.02 -0.62 16 51 H 0.39 -3.90 8.70 -74.05 -0.64 -4.54 16 Total: 0.00 -25.98 439.24 6.06 -19.91 By element: Atomic # 1 Polarization: -15.91 SS G_CDS: 0.34 Total: -15.57 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 8.78 Total: 14.54 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -4.25 Total: -4.37 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.61 Total: -10.31 kcal Atomic # 14 Polarization: -7.00 SS G_CDS: 2.80 Total: -4.20 kcal Total: -25.98 6.06 -19.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13287730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.787 kcal (2) G-P(sol) polarization free energy of solvation -25.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds