Wall clock time and date at job start Sun Mar 7 2021 03:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37681 * 119.95558 * 2 1 4 4 C 1.39755 * 119.90979 * 179.97438 * 3 2 1 5 5 C 1.47602 * 120.08246 * 180.02562 * 4 3 2 6 6 O 1.21591 * 119.99641 * 179.97438 * 5 4 3 7 7 N 1.34769 * 120.00636 * 359.97438 * 5 4 3 8 8 C 1.46503 * 120.00401 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47133 * 180.02562 * 8 7 5 10 10 C 1.38344 * 119.85447 * 269.72293 * 9 8 7 11 11 C 1.37972 * 120.13684 * 179.76610 * 10 9 8 12 12 C 1.39542 * 119.85914 * 0.50947 * 11 10 9 13 13 C 1.43203 * 120.13756 * 179.72229 * 12 11 10 14 14 C 9.23389 * 104.39075 * 179.97438 * 3 1 2 15 15 Si 9.37333 * 102.90729 * 179.97438 * 7 1 2 16 16 C 1.86301 * 109.47306 * 349.75494 * 15 14 13 17 17 C 1.86299 * 109.47194 * 109.75404 * 15 14 13 18 18 C 1.86296 * 109.47058 * 229.75614 * 15 14 13 19 19 C 1.39533 * 119.71298 * 359.74465 * 12 11 10 20 20 C 1.37968 * 119.85863 * 0.02562 * 19 12 11 21 21 C 1.39711 * 119.82747 * 359.73189 * 4 3 2 22 22 C 1.37723 * 119.90961 * 0.54222 * 21 4 3 23 23 C 1.50696 * 119.96056 * 179.73243 * 22 21 4 24 24 O 1.42903 * 109.47389 * 104.72248 * 23 22 21 25 25 Si 1.86301 * 109.46719 * 344.72494 * 23 22 21 26 26 H 1.48506 * 109.47302 * 179.97438 * 25 23 22 27 27 H 1.48503 * 109.47334 * 60.00029 * 25 23 22 28 28 H 1.48500 * 109.47376 * 300.00026 * 25 23 22 29 29 C 1.38978 * 120.08756 * 359.45576 * 22 21 4 30 30 O 1.35709 * 119.91510 * 180.25185 * 29 22 21 31 31 H 1.09006 * 109.46985 * 270.01525 * 1 2 3 32 32 H 1.09001 * 109.47380 * 30.02041 * 1 2 3 33 33 H 1.09003 * 109.47177 * 150.02128 * 1 2 3 34 34 H 1.07999 * 120.04156 * 0.02562 * 3 2 1 35 35 H 0.97004 * 119.99507 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.47133 * 299.99898 * 8 7 5 37 37 H 1.08995 * 109.46841 * 59.99846 * 8 7 5 38 38 H 1.07999 * 119.93197 * 0.02562 * 10 9 8 39 39 H 1.08003 * 120.07065 * 180.23500 * 11 10 9 40 40 H 1.08996 * 109.47014 * 60.00252 * 16 15 14 41 41 H 1.09000 * 109.46902 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47315 * 299.99867 * 16 15 14 43 43 H 1.09006 * 109.46886 * 60.00149 * 17 15 14 44 44 H 1.09000 * 109.47485 * 179.97438 * 17 15 14 45 45 H 1.08996 * 109.47420 * 299.99928 * 17 15 14 46 46 H 1.09003 * 109.47687 * 60.00021 * 18 15 14 47 47 H 1.09000 * 109.47170 * 180.02562 * 18 15 14 48 48 H 1.09006 * 109.47222 * 299.99974 * 18 15 14 49 49 H 1.08003 * 120.06749 * 179.97438 * 19 12 11 50 50 H 1.08006 * 119.92656 * 179.97438 * 20 19 12 51 51 H 1.07997 * 120.05035 * 180.27134 * 21 4 3 52 52 H 1.09001 * 109.47332 * 224.72885 * 23 22 21 53 53 H 0.96699 * 113.99816 * 300.00301 * 24 23 22 54 54 H 0.96698 * 114.00104 * 89.99576 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1929 0.0000 4 6 3.5920 1.1918 0.0005 5 6 4.3328 2.4684 0.0011 6 8 5.5487 2.4656 0.0021 7 7 3.6617 3.6371 0.0006 8 6 4.3971 4.9042 0.0006 9 6 3.4205 6.0519 0.0006 10 6 2.9785 6.5801 -1.1992 11 6 2.0807 7.6277 -1.2061 12 6 1.6266 8.1613 0.0007 13 6 0.6992 9.2525 0.0005 14 6 -0.0610 10.1471 -0.0040 15 14 -1.2914 11.5949 -0.0022 16 6 -0.3763 13.1872 0.3108 17 6 -2.1469 11.6848 -1.6547 18 6 -2.5573 11.3322 1.3391 19 6 2.0803 7.6274 1.2073 20 6 2.9745 6.5767 1.2004 21 6 4.2859 -0.0208 0.0068 22 6 3.5909 -1.2098 0.0010 23 6 4.3383 -2.5184 0.0016 24 8 4.2713 -3.1047 1.3031 25 14 6.1197 -2.2162 -0.4524 26 1 6.8565 -3.5056 -0.4512 27 1 6.7335 -1.2951 0.5377 28 1 6.1894 -1.6069 -1.8048 29 6 2.2012 -1.2045 0.0005 30 8 1.5199 -2.3782 0.0000 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6544 2.1282 0.0004 35 1 2.6917 3.6393 0.0002 36 1 5.0236 4.9607 0.8909 37 1 5.0243 4.9602 -0.8891 38 1 3.3339 6.1689 -2.1325 39 1 1.7335 8.0367 -2.1434 40 1 0.3643 13.3409 -0.4739 41 1 -1.0822 14.0178 0.3114 42 1 0.1242 13.1346 1.2776 43 1 -2.6824 10.7532 -1.8378 44 1 -2.8531 12.5151 -1.6535 45 1 -1.4063 11.8385 -2.4394 46 1 -2.0568 11.2796 2.3060 47 1 -3.2635 12.1626 1.3398 48 1 -3.0928 10.4006 1.1560 49 1 1.7329 8.0362 2.1446 50 1 3.3267 6.1628 2.1338 51 1 5.3659 -0.0258 0.0116 52 1 3.8878 -3.1944 -0.7251 53 1 4.6548 -2.5567 2.0015 54 1 1.3221 -2.7185 0.8832 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13287732.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:48:00 Heat of formation + Delta-G solvation = -63.121278 kcal Electronic energy + Delta-G solvation = -32367.573843 eV Core-core repulsion = 27972.624652 eV Total energy + Delta-G solvation = -4394.949191 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 397.167 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.78080 -40.80192 -40.12020 -37.85453 -37.52740 -36.48417 -34.49041 -33.99079 -32.34318 -32.11655 -31.13329 -29.46024 -28.29046 -28.28580 -28.02950 -27.62978 -26.74742 -24.61751 -23.78162 -22.92108 -22.06901 -21.55837 -19.62238 -19.54703 -19.01466 -18.15151 -17.55332 -16.93371 -16.80538 -16.52337 -16.39057 -16.22402 -16.00724 -15.94396 -15.75291 -15.27440 -14.72682 -14.65289 -14.55540 -14.43959 -14.28542 -14.16515 -14.12011 -13.93309 -13.89259 -13.83596 -13.79626 -13.35307 -13.16911 -13.16508 -12.98877 -12.94286 -12.79784 -12.64857 -12.47127 -12.39250 -12.27359 -12.21924 -12.00334 -11.85560 -11.62115 -11.61847 -11.26000 -10.80484 -10.64569 -10.47415 -10.36592 -10.08265 -10.00135 -9.67645 -9.54356 -0.43926 -0.31753 0.03566 0.28331 1.07522 1.34056 1.37703 1.42884 1.53471 1.56694 1.69911 1.82243 2.01424 2.38817 2.40575 2.47281 2.51336 2.97361 3.12614 3.37287 3.46123 3.54861 3.55605 3.68286 3.75040 3.82059 3.90284 3.98226 4.14655 4.24819 4.28896 4.36365 4.48035 4.57650 4.57987 4.63745 4.72388 4.80223 4.80989 4.83191 4.83650 4.86455 4.89208 4.89516 4.92144 4.95794 5.01791 5.04282 5.15280 5.18412 5.20372 5.30586 5.37587 5.42211 5.57255 5.58332 5.67760 5.68267 5.78903 6.33080 6.56442 6.61244 6.73416 7.00203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C -0.055 4.055 4 C -0.151 4.151 5 C 0.560 3.440 6 O -0.577 6.577 7 N -0.707 5.707 8 C 0.164 3.836 9 C -0.100 4.100 10 C -0.095 4.095 11 C -0.108 4.108 12 C -0.008 4.008 13 C -0.191 4.191 14 C -0.391 4.391 15 Si 1.201 2.799 16 C -0.463 4.463 17 C -0.462 4.462 18 C -0.461 4.461 19 C -0.108 4.108 20 C -0.094 4.094 21 C -0.072 4.072 22 C -0.156 4.156 23 C -0.059 4.059 24 O -0.543 6.543 25 Si 0.963 3.037 26 H -0.262 1.262 27 H -0.257 1.257 28 H -0.267 1.267 29 C 0.163 3.837 30 O -0.495 6.495 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.146 0.854 39 H 0.133 0.867 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.134 0.866 50 H 0.147 0.853 51 H 0.128 0.872 52 H 0.126 0.874 53 H 0.389 0.611 54 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 3.518 1.870 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.074 4.074 4 C -0.154 4.154 5 C 0.349 3.651 6 O -0.458 6.458 7 N -0.359 5.359 8 C 0.041 3.959 9 C -0.101 4.101 10 C -0.113 4.113 11 C -0.126 4.126 12 C -0.008 4.008 13 C -0.191 4.191 14 C -0.422 4.422 15 Si 1.383 2.617 16 C -0.571 4.571 17 C -0.569 4.569 18 C -0.569 4.569 19 C -0.126 4.126 20 C -0.112 4.112 21 C -0.091 4.091 22 C -0.157 4.157 23 C -0.171 4.171 24 O -0.350 6.350 25 Si 0.788 3.212 26 H -0.186 1.186 27 H -0.181 1.181 28 H -0.191 1.191 29 C 0.117 3.883 30 O -0.309 6.309 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.252 0.748 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.152 0.848 50 H 0.165 0.835 51 H 0.146 0.854 52 H 0.144 0.856 53 H 0.238 0.762 54 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -5.535 3.133 0.729 6.401 hybrid contribution 0.036 0.100 0.752 0.759 sum -5.499 3.232 1.481 6.548 Atomic orbital electron populations 1.20772 0.88228 1.04148 1.03717 1.20456 0.98351 0.91729 1.01496 1.21333 0.91615 0.99035 0.95416 1.19762 0.94356 0.92495 1.08802 1.18368 0.86739 0.84404 0.75625 1.90797 1.15139 1.88103 1.51755 1.45852 1.11138 1.04489 1.74466 1.20207 0.92467 0.79561 1.03667 1.19900 0.98869 0.97678 0.93614 1.21214 0.96056 0.95472 0.98581 1.21384 0.97372 0.96618 0.97252 1.16524 0.95923 0.93621 0.94747 1.21585 0.98447 0.97119 1.01957 1.37475 1.02401 1.04017 0.98285 0.76282 0.60615 0.58265 0.66580 1.26243 1.09062 1.16702 1.05075 1.26220 1.08312 1.05330 1.17085 1.26214 1.12181 1.05667 1.12829 1.21388 0.97383 0.96562 0.97241 1.21217 0.96024 0.95414 0.98563 1.21119 1.00369 0.91210 0.96411 1.20605 0.94390 0.95567 1.05181 1.24667 1.08969 0.93684 0.89755 1.86492 1.84583 1.47623 1.16284 0.85499 0.75725 0.79443 0.80487 1.18636 1.18139 1.19125 1.18390 0.88567 0.85927 0.95417 1.84620 1.75370 1.35441 1.35441 0.89590 0.89937 0.90875 0.82421 0.74823 0.90194 0.90345 0.83655 0.84858 0.91324 0.89257 0.91261 0.91151 0.89274 0.91234 0.91181 0.89265 0.91154 0.84762 0.83507 0.85398 0.85625 0.76240 0.72481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.66 9.78 71.23 0.70 1.35 16 2 C -0.12 0.22 5.89 -19.81 -0.12 0.11 16 3 C -0.06 0.13 9.18 22.51 0.21 0.34 16 4 C -0.15 -0.45 5.87 -20.08 -0.12 -0.57 16 5 C 0.56 3.16 7.76 86.72 0.67 3.83 16 6 O -0.58 -8.03 16.34 -4.00 -0.07 -8.10 16 7 N -0.71 0.57 5.50 -469.93 -2.58 -2.02 16 8 C 0.16 -0.08 5.79 85.63 0.50 0.41 16 9 C -0.10 0.13 5.25 -19.81 -0.10 0.03 16 10 C -0.09 0.08 9.68 22.23 0.22 0.29 16 11 C -0.11 -0.24 9.75 22.52 0.22 -0.03 16 12 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 13 C -0.19 -1.37 13.24 30.02 0.40 -0.97 16 14 C -0.39 -1.31 12.14 74.32 0.90 -0.41 16 15 Si 1.20 -7.43 14.26 68.60 0.98 -6.45 16 16 C -0.46 2.29 8.65 113.37 0.98 3.28 16 17 C -0.46 2.47 8.65 113.37 0.98 3.45 16 18 C -0.46 2.54 8.65 113.37 0.98 3.52 16 19 C -0.11 -0.22 9.75 22.52 0.22 0.00 16 20 C -0.09 0.11 9.68 22.23 0.22 0.32 16 21 C -0.07 -0.33 8.20 22.50 0.18 -0.15 16 22 C -0.16 -0.32 5.26 -19.81 -0.10 -0.42 16 23 C -0.06 -0.05 2.37 71.23 0.17 0.12 16 24 O -0.54 0.19 12.88 -148.98 -1.92 -1.73 16 25 Si 0.96 2.92 25.50 68.60 1.75 4.67 16 26 H -0.26 -1.26 7.11 99.48 0.71 -0.56 16 27 H -0.26 -1.14 6.72 99.48 0.67 -0.47 16 28 H -0.27 -1.64 7.11 99.48 0.71 -0.93 16 29 C 0.16 0.07 6.66 22.64 0.15 0.22 16 30 O -0.49 0.56 11.84 -90.30 -1.07 -0.51 16 31 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 32 H 0.08 -0.65 8.08 -2.39 -0.02 -0.67 16 33 H 0.07 -0.30 7.52 -2.39 -0.02 -0.32 16 34 H 0.16 -1.34 6.40 -2.91 -0.02 -1.36 16 35 H 0.41 -2.41 6.49 -92.71 -0.60 -3.01 16 36 H 0.08 0.03 8.08 -2.38 -0.02 0.01 16 37 H 0.08 0.06 8.08 -2.39 -0.02 0.04 16 38 H 0.15 -0.60 8.06 -2.91 -0.02 -0.63 16 39 H 0.13 0.06 8.06 -2.91 -0.02 0.04 16 40 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 42 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 43 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 44 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 45 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 46 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 47 H 0.09 -0.67 7.96 -2.39 -0.02 -0.68 16 48 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 49 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 50 H 0.15 -0.70 8.06 -2.91 -0.02 -0.72 16 51 H 0.13 0.86 4.46 -2.91 -0.01 0.85 16 52 H 0.13 0.05 7.82 -2.39 -0.02 0.03 16 53 H 0.39 -2.45 8.70 -74.06 -0.64 -3.10 16 54 H 0.41 -3.39 9.06 -74.06 -0.67 -4.07 16 Total: 0.00 -23.03 461.95 3.97 -19.06 By element: Atomic # 1 Polarization: -19.25 SS G_CDS: -0.24 Total: -19.50 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 7.12 Total: 14.57 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -2.58 Total: -2.02 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -3.05 Total: -10.33 kcal Atomic # 14 Polarization: -4.50 SS G_CDS: 2.73 Total: -1.78 kcal Total: -23.03 3.97 -19.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13287732.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.065 kcal (2) G-P(sol) polarization free energy of solvation -23.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds