Wall clock time and date at job start Sun Mar 7 2021 03:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86298 * 109.47007 * 2 1 4 4 C 1.86301 * 109.47356 * 239.99844 * 2 1 3 5 5 C 1.90000 * 109.47000 * 119.99768 * 2 1 3 6 6 C 3.07402 * 109.47186 * 119.99870 * 2 1 3 7 7 C 4.50597 * 109.47127 * 119.99853 * 2 1 3 8 8 C 1.39542 * 120.14253 * 203.09724 * 7 6 5 9 9 C 1.37972 * 119.85586 * 180.02562 * 8 7 6 10 10 C 1.38338 * 120.14596 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.85958 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.46769 * 90.00104 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72341 * 12 11 10 14 14 O 1.21553 * 119.99924 * 0.28083 * 13 12 11 15 15 C 1.47842 * 120.00010 * 180.27787 * 13 12 11 16 16 C 1.39988 * 120.55906 * 180.02562 * 15 13 12 17 17 C 1.38396 * 118.28425 * 179.97438 * 16 15 13 18 18 C 1.50705 * 120.34171 * 180.02562 * 17 16 15 19 19 O 1.42900 * 109.47234 * 65.00847 * 18 17 16 20 20 Si 1.86307 * 109.46771 * 185.00238 * 18 17 16 21 21 H 1.48499 * 109.47084 * 300.00276 * 20 18 17 22 22 H 1.48494 * 109.46949 * 60.00439 * 20 18 17 23 23 H 1.48504 * 109.46788 * 180.02562 * 20 18 17 24 24 C 1.38302 * 119.30946 * 0.02562 * 17 16 15 25 25 N 1.31959 * 121.07911 * 359.97438 * 24 17 16 26 26 C 1.31664 * 121.88069 * 359.72433 * 25 24 17 27 27 C 1.38351 * 120.28355 * 0.25584 * 10 9 8 28 28 C 1.37969 * 120.14382 * 359.44186 * 27 10 9 29 29 H 1.09000 * 109.47287 * 299.99931 * 1 2 3 30 30 H 1.08999 * 109.47002 * 60.00483 * 1 2 3 31 31 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47001 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47490 * 300.00001 * 3 2 1 34 34 H 1.09000 * 109.47041 * 59.99918 * 3 2 1 35 35 H 1.09001 * 109.46812 * 300.00150 * 4 2 1 36 36 H 1.09005 * 109.46991 * 60.00087 * 4 2 1 37 37 H 1.08994 * 109.47075 * 179.97438 * 4 2 1 38 38 H 1.08004 * 120.06854 * 359.97438 * 8 7 6 39 39 H 1.08003 * 119.92647 * 180.02562 * 9 8 7 40 40 H 1.09004 * 109.47210 * 330.00462 * 11 10 9 41 41 H 1.08994 * 109.47121 * 210.00431 * 11 10 9 42 42 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 43 43 H 1.07998 * 120.85511 * 359.95912 * 16 15 13 44 44 H 1.08994 * 109.47602 * 305.00338 * 18 17 16 45 45 H 0.96694 * 114.00518 * 179.97438 * 19 18 17 46 46 H 1.08000 * 119.46478 * 179.97438 * 24 17 16 47 47 H 1.07999 * 119.71629 * 180.26551 * 26 25 24 48 48 H 1.08004 * 119.92506 * 179.69988 * 27 10 9 49 49 H 1.08001 * 120.07449 * 180.24700 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4963 -0.8956 1.5514 6 6 2.8877 -1.4490 2.5099 7 6 3.3650 -2.1240 3.6792 8 6 4.2817 -1.4979 4.5246 9 6 4.7380 -2.1539 5.6493 10 6 4.2892 -3.4299 5.9394 11 6 4.7924 -4.1407 7.1693 12 7 3.9141 -3.8379 8.3019 13 6 4.1676 -4.3722 9.5130 14 8 5.1279 -5.1014 9.6666 15 6 3.2777 -4.0715 10.6546 16 6 3.5303 -4.6198 11.9177 17 6 2.6672 -4.3065 12.9532 18 6 2.8958 -4.8706 14.3318 19 8 4.1192 -4.3551 14.8607 20 14 1.4837 -4.3820 15.4446 21 1 1.4043 -2.9012 15.5224 22 1 0.2124 -4.9177 14.8951 23 1 1.7092 -4.9373 16.8033 24 6 1.5928 -3.4704 12.7095 25 7 1.3794 -2.9680 11.5081 26 6 2.1750 -3.2316 10.4927 27 6 3.3848 -4.0585 5.1022 28 6 2.9159 -3.4111 3.9777 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5740 1.7565 0.0005 33 1 2.1206 2.2703 -0.8899 34 1 2.1206 2.2703 0.8900 35 1 2.1207 -1.9059 -1.5210 36 1 2.1207 -0.3644 -2.4111 37 1 3.5740 -0.8778 -1.5213 38 1 4.6338 -0.5022 4.2986 39 1 5.4472 -1.6702 6.3047 40 1 5.8046 -3.8049 7.3945 41 1 4.7976 -5.2160 6.9909 42 1 3.1475 -3.2562 8.1794 43 1 4.3768 -5.2706 12.0797 44 1 2.9541 -5.9574 14.2747 45 1 4.3305 -4.6762 15.7479 46 1 0.9175 -3.2246 13.5157 47 1 1.9697 -2.7980 9.5251 48 1 3.0420 -5.0567 5.3316 49 1 2.2069 -3.9013 3.3270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_13287814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:48:47 Heat of formation + Delta-G solvation = -6.770806 kcal Electronic energy + Delta-G solvation = -27757.411242 eV Core-core repulsion = 23773.699491 eV Total energy + Delta-G solvation = -3983.711751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 368.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.86409 -40.73474 -39.91467 -37.94195 -36.39223 -34.46251 -33.82806 -33.24146 -32.10762 -31.38214 -29.64560 -28.48191 -28.47976 -27.74383 -27.28996 -25.28598 -23.77659 -23.72845 -22.88708 -21.55764 -19.52279 -19.16329 -18.71841 -18.12312 -18.04996 -16.83546 -16.79788 -16.45791 -16.08654 -15.99243 -15.92089 -15.70761 -15.06560 -14.80145 -14.63291 -14.54043 -14.46041 -14.30242 -14.23484 -14.14897 -14.06081 -13.96689 -13.92433 -13.66250 -13.37609 -13.37174 -13.15959 -12.70532 -12.64722 -12.37523 -12.21733 -12.17610 -12.11438 -12.06584 -11.61167 -11.36218 -10.99997 -10.96032 -10.74652 -10.69805 -10.49719 -10.29872 -10.15975 -10.06220 -9.49130 -0.54970 -0.27443 0.01858 0.29719 0.96646 1.30349 1.35427 1.37729 1.49080 1.58047 1.73669 1.76986 1.97488 2.32038 2.32473 2.38609 2.62820 3.01100 3.04893 3.21320 3.47335 3.54146 3.66335 3.70524 3.74965 3.78368 3.83869 3.90430 4.06118 4.20114 4.25474 4.28449 4.40123 4.58557 4.59517 4.64874 4.64977 4.69135 4.69449 4.69620 4.71430 4.83742 4.86294 4.94188 4.94509 5.17160 5.21764 5.33293 5.38698 5.40308 5.42732 5.48426 5.48587 5.79727 6.31243 6.43415 6.65055 6.68341 7.05531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.142 2.858 3 C -0.452 4.452 4 C -0.452 4.452 5 C -0.388 4.388 6 C -0.145 4.145 7 C 0.015 3.985 8 C -0.099 4.099 9 C -0.097 4.097 10 C -0.107 4.107 11 C 0.161 3.839 12 N -0.722 5.722 13 C 0.566 3.434 14 O -0.528 6.528 15 C -0.189 4.189 16 C 0.016 3.984 17 C -0.134 4.134 18 C -0.079 4.079 19 O -0.543 6.543 20 Si 0.939 3.061 21 H -0.243 1.243 22 H -0.244 1.244 23 H -0.248 1.248 24 C 0.123 3.877 25 N -0.477 5.477 26 C 0.139 3.861 27 C -0.097 4.097 28 C -0.099 4.099 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.402 0.598 43 H 0.153 0.847 44 H 0.083 0.917 45 H 0.384 0.616 46 H 0.157 0.843 47 H 0.162 0.838 48 H 0.131 0.869 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 0.700 -1.174 2.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.328 2.672 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.422 4.422 6 C -0.145 4.145 7 C 0.014 3.986 8 C -0.116 4.116 9 C -0.115 4.115 10 C -0.107 4.107 11 C 0.039 3.961 12 N -0.374 5.374 13 C 0.353 3.647 14 O -0.404 6.404 15 C -0.194 4.194 16 C -0.011 4.011 17 C -0.136 4.136 18 C -0.190 4.190 19 O -0.350 6.350 20 Si 0.760 3.240 21 H -0.166 1.166 22 H -0.168 1.168 23 H -0.172 1.172 24 C -0.033 4.033 25 N -0.184 5.184 26 C -0.020 4.020 27 C -0.115 4.115 28 C -0.117 4.117 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.238 0.762 43 H 0.171 0.829 44 H 0.101 0.899 45 H 0.232 0.768 46 H 0.174 0.826 47 H 0.179 0.821 48 H 0.149 0.851 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.149 1.192 -1.132 3.553 hybrid contribution 0.849 -0.824 0.523 1.293 sum -2.300 0.368 -0.610 2.408 Atomic orbital electron populations 1.26116 1.19966 1.04970 1.04971 0.77030 0.66039 0.64718 0.59396 1.26115 1.06707 1.18235 1.04973 1.26118 1.06723 1.08435 1.14760 1.36093 1.00258 1.01298 1.04567 1.20972 0.99654 0.98678 0.95189 1.16262 0.97131 0.93507 0.91662 1.21263 0.96270 1.00147 0.93969 1.21055 0.99536 0.94020 0.96919 1.19936 0.98776 0.95154 0.96835 1.20253 0.93882 1.00038 0.81933 1.45959 1.31458 1.51242 1.08766 1.17988 0.84484 0.79997 0.82264 1.90825 1.29121 1.36567 1.83901 1.20997 0.99233 1.03674 0.95461 1.21603 0.96366 0.93545 0.89559 1.20312 0.97335 1.00415 0.95521 1.24643 0.97181 1.00782 0.96351 1.86505 1.39338 1.72374 1.36748 0.85840 0.77050 0.82070 0.79063 1.16600 1.16785 1.17197 1.22866 0.94783 0.90834 0.94806 1.67739 1.28786 1.22300 0.99600 1.23037 0.88826 0.92070 0.98026 1.21052 0.96335 1.00111 0.94045 1.21259 0.99611 0.93545 0.97247 0.90895 0.90361 0.90907 0.90898 0.90358 0.90897 0.90902 0.90365 0.90894 0.85254 0.85073 0.89925 0.89938 0.76211 0.82892 0.89882 0.76751 0.82579 0.82136 0.85088 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.00 8.65 101.05 0.87 1.87 16 2 Si 1.14 -3.12 14.26 -169.99 -2.42 -5.55 16 3 C -0.45 1.00 8.65 101.05 0.87 1.87 16 4 C -0.45 0.97 8.65 101.05 0.87 1.84 16 5 C -0.39 -0.58 12.14 29.55 0.36 -0.22 16 6 C -0.14 -0.45 13.24 -38.84 -0.51 -0.97 16 7 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 8 C -0.10 -0.09 9.75 -39.19 -0.38 -0.47 16 9 C -0.10 0.03 9.68 -39.64 -0.38 -0.35 16 10 C -0.11 0.06 5.25 -104.54 -0.55 -0.49 16 11 C 0.16 -0.07 5.79 -5.19 -0.03 -0.10 16 12 N -0.72 0.32 5.50 -62.43 -0.34 -0.03 16 13 C 0.57 1.28 7.78 -12.33 -0.10 1.18 16 14 O -0.53 -3.06 16.42 5.32 0.09 -2.97 16 15 C -0.19 -0.29 5.89 -104.82 -0.62 -0.91 16 16 C 0.02 0.03 9.38 -38.87 -0.36 -0.34 16 17 C -0.13 -0.14 5.39 -104.54 -0.56 -0.70 16 18 C -0.08 0.09 2.81 36.01 0.10 0.19 16 19 O -0.54 0.23 12.82 -35.23 -0.45 -0.22 16 20 Si 0.94 -1.56 25.16 -169.99 -4.28 -5.84 16 21 H -0.24 0.09 7.04 56.52 0.40 0.49 16 22 H -0.24 0.28 7.11 56.52 0.40 0.69 16 23 H -0.25 0.39 7.11 56.52 0.40 0.79 16 24 C 0.12 0.17 9.84 -17.47 -0.17 0.00 16 25 N -0.48 -1.04 10.35 -12.91 -0.13 -1.17 16 26 C 0.14 0.08 10.71 -17.13 -0.18 -0.11 16 27 C -0.10 0.04 9.68 -39.64 -0.38 -0.34 16 28 C -0.10 -0.09 9.75 -39.19 -0.38 -0.47 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 36 H 0.08 -0.22 7.96 -51.93 -0.41 -0.64 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.13 -0.01 8.06 -52.48 -0.42 -0.44 16 39 H 0.13 -0.24 8.06 -52.48 -0.42 -0.66 16 40 H 0.08 0.00 8.08 -51.93 -0.42 -0.42 16 41 H 0.08 -0.01 8.08 -51.93 -0.42 -0.43 16 42 H 0.40 -1.01 6.53 -40.82 -0.27 -1.27 16 43 H 0.15 0.29 7.74 -52.49 -0.41 -0.12 16 44 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 45 H 0.38 -1.88 8.74 45.56 0.40 -1.49 16 46 H 0.16 -0.06 4.87 -52.49 -0.26 -0.31 16 47 H 0.16 -0.41 6.42 -52.49 -0.34 -0.75 16 48 H 0.13 -0.26 8.06 -52.48 -0.42 -0.68 16 49 H 0.13 -0.02 8.06 -52.49 -0.42 -0.45 16 LS Contribution 426.87 15.07 6.43 6.43 Total: 0.00 -9.74 426.87 -9.59 -19.34 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -6.33 Total: -10.91 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.15 Total: 0.91 kcal Atomic # 7 Polarization: -0.72 SS G_CDS: -0.48 Total: -1.19 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: -0.36 Total: -3.19 kcal Atomic # 14 Polarization: -4.68 SS G_CDS: -6.70 Total: -11.39 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -9.74 -9.59 -19.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13287814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.565 kcal (2) G-P(sol) polarization free energy of solvation -9.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds