Wall clock time and date at job start Sun Mar 7 2021 03:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86298 * 109.47007 * 2 1 4 4 C 1.86301 * 109.47356 * 239.99844 * 2 1 3 5 5 C 1.90000 * 109.47000 * 119.99768 * 2 1 3 6 6 C 3.07402 * 109.47186 * 119.99870 * 2 1 3 7 7 C 4.50597 * 109.47127 * 119.99853 * 2 1 3 8 8 C 1.39542 * 120.14253 * 203.09724 * 7 6 5 9 9 C 1.37972 * 119.85586 * 180.02562 * 8 7 6 10 10 C 1.38338 * 120.14596 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.85958 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.46769 * 90.00104 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72341 * 12 11 10 14 14 O 1.21553 * 119.99924 * 0.28083 * 13 12 11 15 15 C 1.47842 * 120.00010 * 180.27787 * 13 12 11 16 16 C 1.39988 * 120.55906 * 180.02562 * 15 13 12 17 17 C 1.38396 * 118.28425 * 179.97438 * 16 15 13 18 18 C 1.50705 * 120.34171 * 180.02562 * 17 16 15 19 19 O 1.42900 * 109.47234 * 65.00847 * 18 17 16 20 20 Si 1.86307 * 109.46771 * 185.00238 * 18 17 16 21 21 H 1.48499 * 109.47084 * 300.00276 * 20 18 17 22 22 H 1.48494 * 109.46949 * 60.00439 * 20 18 17 23 23 H 1.48504 * 109.46788 * 180.02562 * 20 18 17 24 24 C 1.38302 * 119.30946 * 0.02562 * 17 16 15 25 25 N 1.31959 * 121.07911 * 359.97438 * 24 17 16 26 26 C 1.31664 * 121.88069 * 359.72433 * 25 24 17 27 27 C 1.38351 * 120.28355 * 0.25584 * 10 9 8 28 28 C 1.37969 * 120.14382 * 359.44186 * 27 10 9 29 29 H 1.09000 * 109.47287 * 299.99931 * 1 2 3 30 30 H 1.08999 * 109.47002 * 60.00483 * 1 2 3 31 31 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47001 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47490 * 300.00001 * 3 2 1 34 34 H 1.09000 * 109.47041 * 59.99918 * 3 2 1 35 35 H 1.09001 * 109.46812 * 300.00150 * 4 2 1 36 36 H 1.09005 * 109.46991 * 60.00087 * 4 2 1 37 37 H 1.08994 * 109.47075 * 179.97438 * 4 2 1 38 38 H 1.08004 * 120.06854 * 359.97438 * 8 7 6 39 39 H 1.08003 * 119.92647 * 180.02562 * 9 8 7 40 40 H 1.09004 * 109.47210 * 330.00462 * 11 10 9 41 41 H 1.08994 * 109.47121 * 210.00431 * 11 10 9 42 42 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 43 43 H 1.07998 * 120.85511 * 359.95912 * 16 15 13 44 44 H 1.08994 * 109.47602 * 305.00338 * 18 17 16 45 45 H 0.96694 * 114.00518 * 179.97438 * 19 18 17 46 46 H 1.08000 * 119.46478 * 179.97438 * 24 17 16 47 47 H 1.07999 * 119.71629 * 180.26551 * 26 25 24 48 48 H 1.08004 * 119.92506 * 179.69988 * 27 10 9 49 49 H 1.08001 * 120.07449 * 180.24700 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4963 -0.8956 1.5514 6 6 2.8877 -1.4490 2.5099 7 6 3.3650 -2.1240 3.6792 8 6 4.2817 -1.4979 4.5246 9 6 4.7380 -2.1539 5.6493 10 6 4.2892 -3.4299 5.9394 11 6 4.7924 -4.1407 7.1693 12 7 3.9141 -3.8379 8.3019 13 6 4.1676 -4.3722 9.5130 14 8 5.1279 -5.1014 9.6666 15 6 3.2777 -4.0715 10.6546 16 6 3.5303 -4.6198 11.9177 17 6 2.6672 -4.3065 12.9532 18 6 2.8958 -4.8706 14.3318 19 8 4.1192 -4.3551 14.8607 20 14 1.4837 -4.3820 15.4446 21 1 1.4043 -2.9012 15.5224 22 1 0.2124 -4.9177 14.8951 23 1 1.7092 -4.9373 16.8033 24 6 1.5928 -3.4704 12.7095 25 7 1.3794 -2.9680 11.5081 26 6 2.1750 -3.2316 10.4927 27 6 3.3848 -4.0585 5.1022 28 6 2.9159 -3.4111 3.9777 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5740 1.7565 0.0005 33 1 2.1206 2.2703 -0.8899 34 1 2.1206 2.2703 0.8900 35 1 2.1207 -1.9059 -1.5210 36 1 2.1207 -0.3644 -2.4111 37 1 3.5740 -0.8778 -1.5213 38 1 4.6338 -0.5022 4.2986 39 1 5.4472 -1.6702 6.3047 40 1 5.8046 -3.8049 7.3945 41 1 4.7976 -5.2160 6.9909 42 1 3.1475 -3.2562 8.1794 43 1 4.3768 -5.2706 12.0797 44 1 2.9541 -5.9574 14.2747 45 1 4.3305 -4.6762 15.7479 46 1 0.9175 -3.2246 13.5157 47 1 1.9697 -2.7980 9.5251 48 1 3.0420 -5.0567 5.3316 49 1 2.2069 -3.9013 3.3270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13287814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:48:46 Heat of formation + Delta-G solvation = -2.507180 kcal Electronic energy + Delta-G solvation = -27757.226357 eV Core-core repulsion = 23773.699491 eV Total energy + Delta-G solvation = -3983.526866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 368.147 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.94943 -40.77291 -40.02645 -37.86605 -36.49742 -34.54759 -33.89188 -33.30298 -32.10737 -31.44052 -29.46231 -28.28979 -28.28794 -27.78195 -27.27462 -25.35573 -23.77487 -23.77251 -22.91132 -21.65611 -19.54619 -19.22256 -18.63978 -18.17476 -18.07886 -16.89002 -16.84490 -16.52025 -16.10753 -16.02996 -15.91933 -15.65397 -15.10049 -14.86456 -14.58432 -14.52478 -14.45222 -14.31356 -14.15908 -14.11946 -13.91545 -13.89124 -13.83754 -13.74426 -13.16863 -13.16618 -12.98938 -12.66391 -12.63959 -12.38866 -12.22374 -12.11556 -12.03673 -12.00107 -11.61808 -11.52522 -11.10080 -10.82003 -10.73857 -10.64648 -10.55394 -10.30846 -10.16967 -10.06954 -9.53772 -0.63092 -0.31350 -0.05352 0.29269 1.09124 1.37661 1.44225 1.50393 1.53020 1.60292 1.69934 1.88069 1.98248 2.38696 2.39660 2.47245 2.56347 2.97100 3.04542 3.26270 3.46969 3.54125 3.66444 3.67278 3.76011 3.77855 3.82696 3.91121 4.09607 4.20591 4.26040 4.29908 4.48829 4.58964 4.59068 4.79960 4.81868 4.83349 4.83461 4.86337 4.89237 4.89400 4.89583 4.92120 4.96697 5.13148 5.19179 5.28237 5.38391 5.42816 5.58234 5.67810 5.68038 5.79834 6.27703 6.56587 6.58341 6.76810 6.95196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.201 2.799 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.392 4.392 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.109 4.109 9 C -0.094 4.094 10 C -0.101 4.101 11 C 0.165 3.835 12 N -0.706 5.706 13 C 0.569 3.431 14 O -0.568 6.568 15 C -0.195 4.195 16 C 0.004 3.996 17 C -0.138 4.138 18 C -0.082 4.082 19 O -0.563 6.563 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.251 1.251 23 H -0.246 1.246 24 C 0.114 3.886 25 N -0.496 5.496 26 C 0.143 3.857 27 C -0.094 4.094 28 C -0.109 4.109 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.414 0.586 43 H 0.147 0.853 44 H 0.102 0.898 45 H 0.402 0.598 46 H 0.169 0.831 47 H 0.189 0.811 48 H 0.148 0.852 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 0.921 -1.365 3.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.382 2.618 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.423 4.423 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.127 4.127 9 C -0.113 4.113 10 C -0.101 4.101 11 C 0.042 3.958 12 N -0.359 5.359 13 C 0.356 3.644 14 O -0.448 6.448 15 C -0.200 4.200 16 C -0.023 4.023 17 C -0.140 4.140 18 C -0.192 4.192 19 O -0.373 6.373 20 Si 0.796 3.204 21 H -0.188 1.188 22 H -0.175 1.175 23 H -0.170 1.170 24 C -0.041 4.041 25 N -0.204 5.204 26 C -0.015 4.015 27 C -0.112 4.112 28 C -0.127 4.127 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.252 0.748 43 H 0.165 0.835 44 H 0.120 0.880 45 H 0.253 0.747 46 H 0.186 0.814 47 H 0.206 0.794 48 H 0.166 0.834 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.748 1.407 -1.304 4.210 hybrid contribution 1.032 -0.866 0.557 1.458 sum -2.716 0.541 -0.747 2.868 Atomic orbital electron populations 1.26218 1.20406 1.04931 1.05366 0.76293 0.64984 0.63401 0.57115 1.26221 1.06590 1.18758 1.05386 1.26230 1.06554 1.08532 1.15681 1.37488 0.99260 1.00522 1.04986 1.21601 1.01069 1.00081 0.96373 1.16534 0.98004 0.94294 0.92046 1.21389 0.96405 1.00551 0.94347 1.21225 0.99406 0.94047 0.96598 1.19908 0.98589 0.95009 0.96629 1.20225 0.93769 1.00038 0.81747 1.45856 1.31518 1.50492 1.08007 1.18088 0.83951 0.79480 0.82911 1.90803 1.30865 1.38597 1.84569 1.21003 0.99603 1.04245 0.95182 1.21695 0.96559 0.93859 0.90181 1.20541 0.96923 1.00149 0.96437 1.24760 0.97318 1.01807 0.95301 1.86455 1.39609 1.72932 1.38313 0.85346 0.76130 0.80321 0.78643 1.18769 1.17471 1.16974 1.23141 0.95154 0.90771 0.95064 1.67775 1.29463 1.22964 1.00191 1.23413 0.87964 0.91371 0.98793 1.21231 0.95886 1.00676 0.93407 1.21394 1.00015 0.93360 0.97894 0.91227 0.89244 0.91185 0.91225 0.89249 0.91191 0.91214 0.89237 0.91296 0.84883 0.83545 0.90090 0.89952 0.74850 0.83493 0.87984 0.74659 0.81438 0.79407 0.83425 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.23 8.65 113.37 0.98 3.21 16 2 Si 1.20 -6.74 14.26 68.60 0.98 -5.76 16 3 C -0.46 2.21 8.65 113.37 0.98 3.19 16 4 C -0.46 2.13 8.65 113.37 0.98 3.12 16 5 C -0.39 -1.58 12.14 74.32 0.90 -0.67 16 6 C -0.19 -1.50 13.24 30.01 0.40 -1.11 16 7 C -0.01 -0.05 5.72 -21.40 -0.12 -0.17 16 8 C -0.11 -0.30 9.75 22.52 0.22 -0.08 16 9 C -0.09 0.06 9.68 22.23 0.22 0.27 16 10 C -0.10 0.13 5.25 -19.81 -0.10 0.03 16 11 C 0.16 -0.16 5.79 85.63 0.50 0.33 16 12 N -0.71 0.82 5.50 -469.72 -2.58 -1.76 16 13 C 0.57 2.82 7.78 86.79 0.68 3.50 16 14 O -0.57 -7.21 16.42 -3.88 -0.06 -7.28 16 15 C -0.20 -0.68 5.89 -19.99 -0.12 -0.80 16 16 C 0.00 0.02 9.38 22.73 0.21 0.23 16 17 C -0.14 -0.34 5.39 -19.81 -0.11 -0.45 16 18 C -0.08 0.20 2.81 71.24 0.20 0.40 16 19 O -0.56 0.50 12.82 -148.98 -1.91 -1.41 16 20 Si 0.97 -3.51 25.16 68.60 1.73 -1.78 16 21 H -0.26 0.10 7.04 99.48 0.70 0.81 16 22 H -0.25 0.67 7.11 99.48 0.71 1.38 16 23 H -0.25 0.99 7.11 99.48 0.71 1.70 16 24 C 0.11 0.34 9.84 84.69 0.83 1.17 16 25 N -0.50 -2.16 10.35 -194.76 -2.01 -4.17 16 26 C 0.14 0.13 10.71 85.04 0.91 1.04 16 27 C -0.09 0.08 9.68 22.23 0.22 0.30 16 28 C -0.11 -0.28 9.75 22.52 0.22 -0.06 16 29 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 31 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 32 H 0.07 -0.27 7.96 -2.38 -0.02 -0.28 16 33 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 34 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 35 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 36 H 0.09 -0.60 7.96 -2.38 -0.02 -0.62 16 37 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 38 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 39 H 0.15 -0.60 8.06 -2.91 -0.02 -0.62 16 40 H 0.08 0.00 8.08 -2.38 -0.02 -0.02 16 41 H 0.08 -0.03 8.08 -2.39 -0.02 -0.05 16 42 H 0.41 -2.42 6.53 -92.71 -0.61 -3.02 16 43 H 0.15 0.77 7.74 -2.91 -0.02 0.75 16 44 H 0.10 -0.66 7.96 -2.39 -0.02 -0.68 16 45 H 0.40 -4.08 8.74 -74.06 -0.65 -4.72 16 46 H 0.17 -0.08 4.87 -2.91 -0.01 -0.10 16 47 H 0.19 -1.15 6.42 -2.91 -0.02 -1.17 16 48 H 0.15 -0.68 8.06 -2.91 -0.02 -0.70 16 49 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 Total: 0.00 -23.19 426.87 4.61 -18.58 By element: Atomic # 1 Polarization: -10.34 SS G_CDS: 0.48 Total: -9.85 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 7.99 Total: 13.43 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -4.60 Total: -5.93 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -1.97 Total: -8.69 kcal Atomic # 14 Polarization: -10.24 SS G_CDS: 2.70 Total: -7.54 kcal Total: -23.19 4.61 -18.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13287814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.074 kcal (2) G-P(sol) polarization free energy of solvation -23.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds