Wall clock time and date at job start Sun Mar 7 2021 03:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36411 * 125.80081 * 2 1 4 4 C 1.47380 * 127.19421 * 0.02562 * 3 2 1 5 5 O 1.21618 * 119.99901 * 359.70088 * 4 3 2 6 6 N 1.34772 * 120.00301 * 179.70930 * 4 3 2 7 7 C 1.46501 * 120.00213 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47197 * 179.97438 * 7 6 4 9 9 C 1.38345 * 119.85527 * 89.99949 * 8 7 6 10 10 C 1.37976 * 120.14242 * 180.02562 * 9 8 7 11 11 C 1.39533 * 119.85515 * 359.97438 * 10 9 8 12 12 C 1.43205 * 120.14229 * 179.97438 * 11 10 9 13 13 C 9.66823 * 151.00358 * 180.47896 * 3 1 2 14 14 Si 9.37189 * 173.49170 * 358.38001 * 6 1 2 15 15 C 1.86303 * 109.47168 * 115.46809 * 14 13 12 16 16 C 1.86299 * 109.47225 * 235.46318 * 14 13 12 17 17 C 1.86293 * 109.47348 * 355.46402 * 14 13 12 18 18 C 1.39538 * 119.71837 * 0.24774 * 11 10 9 19 19 C 1.37976 * 119.85390 * 359.51589 * 18 11 10 20 20 C 1.47015 * 105.61584 * 179.75132 * 3 2 1 21 21 C 1.34180 * 105.95635 * 0.22839 * 20 3 2 22 22 C 1.50697 * 125.44142 * 179.97438 * 21 20 3 23 23 O 1.42898 * 109.46897 * 299.99893 * 22 21 20 24 24 Si 1.86292 * 109.47146 * 179.97438 * 22 21 20 25 25 H 1.48501 * 109.47303 * 59.99921 * 24 22 21 26 26 H 1.48500 * 109.47159 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47338 * 299.99880 * 24 22 21 28 28 O 1.33653 * 125.80297 * 180.13755 * 2 1 3 29 29 H 1.08997 * 109.47585 * 90.00120 * 1 2 3 30 30 H 1.09001 * 109.47312 * 210.00485 * 1 2 3 31 31 H 1.09011 * 109.47351 * 329.99836 * 1 2 3 32 32 H 0.97000 * 120.00143 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.46973 * 59.99452 * 7 6 4 34 34 H 1.09002 * 109.47199 * 299.99902 * 7 6 4 35 35 H 1.07999 * 119.93198 * 0.02562 * 9 8 7 36 36 H 1.08004 * 120.07207 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47332 * 59.99762 * 15 14 13 38 38 H 1.09002 * 109.47176 * 179.97438 * 15 14 13 39 39 H 1.09004 * 109.46801 * 299.99773 * 15 14 13 40 40 H 1.09001 * 109.47058 * 60.00018 * 16 14 13 41 41 H 1.09002 * 109.47329 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47529 * 300.00490 * 16 14 13 43 43 H 1.09001 * 109.47264 * 60.00441 * 17 14 13 44 44 H 1.09002 * 109.47236 * 180.02562 * 17 14 13 45 45 H 1.08998 * 109.47688 * 299.99834 * 17 14 13 46 46 H 1.07994 * 120.07419 * 179.72273 * 18 11 10 47 47 H 1.07997 * 119.92849 * 180.22787 * 19 18 11 48 48 H 1.08002 * 127.02300 * 180.20420 * 20 3 2 49 49 H 1.09007 * 109.47052 * 60.00056 * 22 21 20 50 50 H 0.96699 * 114.00233 * 299.99609 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.1064 0.0000 4 6 1.8739 2.5157 0.0005 5 8 0.6889 2.7892 -0.0045 6 7 2.7929 3.5015 0.0064 7 6 2.3644 4.9025 0.0063 8 6 3.5762 5.7984 0.0141 9 6 4.1362 6.2097 -1.1822 10 6 5.2460 7.0295 -1.1820 11 6 5.8030 7.4442 0.0283 12 6 6.9552 8.2947 0.0356 13 6 7.9005 8.9907 0.0392 14 14 9.4293 10.1188 0.0484 15 6 9.4868 11.0999 -1.5343 16 6 9.3322 11.2846 1.4983 17 6 10.9681 9.0782 0.1904 18 6 5.2362 7.0220 1.2314 19 6 4.1235 6.2062 1.2174 20 6 3.6848 0.5991 0.0061 21 6 3.5859 -0.7390 0.0041 22 6 4.7458 -1.7010 0.0080 23 8 5.5476 -1.4851 -1.1549 24 14 4.1026 -3.4494 0.0038 25 1 3.2798 -3.6712 -1.2123 26 1 5.2457 -4.3974 0.0083 27 1 3.2697 -3.6734 1.2127 28 8 2.2888 -1.0840 -0.0026 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 3.7381 3.2835 0.0106 33 1 1.7625 5.0983 0.8937 34 1 1.7711 5.1009 -0.8863 35 1 3.7039 5.8884 -2.1183 36 1 5.6825 7.3496 -2.1166 37 1 8.5865 11.7087 -1.6173 38 1 10.3637 11.7474 -1.5288 39 1 9.5437 10.4178 -2.3827 40 1 9.2985 10.7107 2.4244 41 1 10.2090 11.9321 1.5034 42 1 8.4319 11.8934 1.4154 43 1 11.0250 8.3962 -0.6580 44 1 11.8451 9.7255 0.1961 45 1 10.9345 8.5043 1.1164 46 1 5.6653 7.3358 2.1714 47 1 3.6816 5.8817 2.1479 48 1 4.5927 1.1840 0.0109 49 1 5.3496 -1.5385 0.9010 50 1 5.0741 -1.6126 -1.9884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_13308374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:49:00 Heat of formation + Delta-G solvation = -37.375207 kcal Electronic energy + Delta-G solvation = -28834.621078 eV Core-core repulsion = 24724.552080 eV Total energy + Delta-G solvation = -4110.068998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.151 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.74191 -40.84249 -39.96800 -38.11306 -36.28864 -34.43179 -33.98483 -33.10520 -32.08241 -31.47932 -29.64775 -29.45729 -28.47537 -28.47524 -27.54128 -25.66485 -24.11756 -23.75052 -22.92810 -21.95773 -20.76757 -19.49645 -19.01079 -18.06361 -17.71082 -17.21316 -16.80401 -16.72016 -16.22663 -16.00393 -15.98826 -15.77282 -15.55720 -14.97793 -14.54983 -14.53575 -14.41921 -14.30419 -14.19632 -14.14479 -14.05640 -14.00053 -13.91874 -13.85059 -13.60097 -13.36898 -13.36698 -13.15462 -12.94495 -12.84136 -12.62239 -12.34979 -12.24166 -12.15280 -12.09570 -12.05083 -11.59807 -11.08380 -10.92739 -10.87119 -10.73723 -10.65366 -10.13362 -10.03434 -9.54660 -9.46464 -0.24253 0.30546 0.32323 0.82892 0.99136 1.33310 1.36564 1.41230 1.51702 1.59115 1.69397 1.86359 2.10337 2.32771 2.33657 2.37432 2.48872 3.07033 3.13858 3.38091 3.51809 3.77926 3.78039 3.79547 3.86628 3.92682 4.13632 4.27911 4.29168 4.31021 4.42429 4.54576 4.58612 4.62619 4.65374 4.65498 4.68853 4.69719 4.69980 4.70038 4.72075 4.81461 4.87152 4.96668 5.10848 5.21378 5.22805 5.37499 5.39178 5.42550 5.46007 5.48964 5.49082 5.82382 5.91145 6.30346 6.49566 6.69906 7.23180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.095 3.905 3 C -0.253 4.253 4 C 0.593 3.407 5 O -0.539 6.539 6 N -0.720 5.720 7 C 0.162 3.838 8 C -0.104 4.104 9 C -0.097 4.097 10 C -0.099 4.099 11 C 0.013 3.987 12 C -0.144 4.144 13 C -0.389 4.389 14 Si 1.143 2.857 15 C -0.452 4.452 16 C -0.452 4.452 17 C -0.452 4.452 18 C -0.099 4.099 19 C -0.097 4.097 20 C -0.145 4.145 21 C -0.059 4.059 22 C -0.040 4.040 23 O -0.529 6.529 24 Si 0.956 3.044 25 H -0.248 1.248 26 H -0.245 1.245 27 H -0.246 1.246 28 O -0.173 6.173 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.403 0.597 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.159 0.841 49 H 0.137 0.863 50 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 0.417 -0.054 3.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 C -0.257 4.257 4 C 0.382 3.618 5 O -0.418 6.418 6 N -0.372 5.372 7 C 0.040 3.960 8 C -0.105 4.105 9 C -0.116 4.116 10 C -0.116 4.116 11 C 0.013 3.987 12 C -0.144 4.144 13 C -0.423 4.423 14 Si 1.329 2.671 15 C -0.560 4.560 16 C -0.560 4.560 17 C -0.560 4.560 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.165 4.165 21 C -0.107 4.107 22 C -0.150 4.150 23 O -0.334 6.334 24 Si 0.776 3.224 25 H -0.172 1.172 26 H -0.168 1.168 27 H -0.169 1.169 28 O -0.070 6.070 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.238 0.762 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.177 0.823 49 H 0.154 0.846 50 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.395 -0.479 0.384 2.473 hybrid contribution 0.089 0.373 -0.382 0.541 sum 2.484 -0.106 0.003 2.486 Atomic orbital electron populations 1.20707 0.83327 1.05460 1.04793 1.22906 0.94066 0.82814 0.96029 1.21099 0.93285 0.93702 1.17620 1.17154 0.85320 0.83654 0.75689 1.90787 1.16481 1.83993 1.50538 1.45827 1.10017 1.05432 1.75942 1.20215 0.93513 0.78623 1.03693 1.19952 0.97448 0.99521 0.93555 1.21048 0.95512 0.97122 0.97894 1.21254 0.95847 0.97284 0.97264 1.16254 0.92343 0.96266 0.93824 1.20975 0.95304 0.97750 1.00382 1.36080 1.04416 1.02082 0.99729 0.77013 0.59611 0.63132 0.67352 1.26117 1.04970 1.09028 1.15917 1.26117 1.05029 1.10740 1.14152 1.26119 1.15006 1.09844 1.05063 1.21253 0.95758 0.97296 0.97352 1.21047 0.95552 0.97184 0.97808 1.22578 0.96451 0.93436 1.04013 1.22659 0.82826 0.95805 1.09375 1.24366 0.90366 1.07443 0.92863 1.86571 1.38161 1.93329 1.15361 0.85530 0.80098 0.73985 0.82799 1.17151 1.16786 1.16940 1.83674 1.16521 1.35231 1.71576 0.88922 0.90017 0.87026 0.76238 0.90144 0.90139 0.85136 0.85293 0.90900 0.90373 0.90907 0.90912 0.90371 0.90899 0.90901 0.90377 0.90912 0.85298 0.85138 0.82306 0.84583 0.77060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.02 9.89 36.00 0.36 0.34 16 2 C 0.10 0.19 7.37 -34.97 -0.26 -0.07 16 3 C -0.25 -0.55 6.31 -103.28 -0.65 -1.20 16 4 C 0.59 1.75 7.81 -12.54 -0.10 1.65 16 5 O -0.54 -3.02 14.85 5.26 0.08 -2.94 16 6 N -0.72 -0.38 5.54 -62.58 -0.35 -0.73 16 7 C 0.16 0.04 5.79 -5.19 -0.03 0.01 16 8 C -0.10 0.00 5.25 -104.55 -0.55 -0.55 16 9 C -0.10 -0.01 9.68 -39.64 -0.38 -0.40 16 10 C -0.10 -0.13 9.75 -39.19 -0.38 -0.51 16 11 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 12 C -0.14 -0.48 13.24 -38.84 -0.51 -1.00 16 13 C -0.39 -0.64 12.14 29.55 0.36 -0.28 16 14 Si 1.14 -3.04 14.26 -169.99 -2.42 -5.47 16 15 C -0.45 0.96 8.65 101.05 0.87 1.83 16 16 C -0.45 0.95 8.65 101.05 0.87 1.83 16 17 C -0.45 0.95 8.65 101.05 0.87 1.83 16 18 C -0.10 -0.12 9.75 -39.19 -0.38 -0.51 16 19 C -0.10 -0.01 9.68 -39.64 -0.38 -0.40 16 20 C -0.15 -0.09 10.46 -37.46 -0.39 -0.48 16 21 C -0.06 -0.03 6.20 -35.74 -0.22 -0.26 16 22 C -0.04 0.05 2.97 36.00 0.11 0.16 16 23 O -0.53 0.50 12.86 -35.23 -0.45 0.05 16 24 Si 0.96 -0.82 27.37 -169.99 -4.65 -5.47 16 25 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 26 H -0.24 0.03 7.11 56.52 0.40 0.43 16 27 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 28 O -0.17 -0.31 8.89 7.66 0.07 -0.24 16 29 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 31 H 0.11 0.15 6.49 -51.92 -0.34 -0.19 16 32 H 0.40 -0.42 7.63 -40.82 -0.31 -0.73 16 33 H 0.08 0.04 8.08 -51.93 -0.42 -0.38 16 34 H 0.08 0.04 8.08 -51.93 -0.42 -0.38 16 35 H 0.13 -0.17 8.06 -52.49 -0.42 -0.60 16 36 H 0.13 0.02 8.06 -52.48 -0.42 -0.40 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 41 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 42 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 43 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 44 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 45 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 46 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 47 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 48 H 0.16 -0.20 7.74 -52.49 -0.41 -0.61 16 49 H 0.14 -0.38 7.96 -51.93 -0.41 -0.79 16 50 H 0.38 -1.49 8.70 45.56 0.40 -1.10 16 LS Contribution 437.96 15.07 6.60 6.60 Total: 0.00 -8.49 437.96 -9.51 -18.00 By element: Atomic # 1 Polarization: -4.25 SS G_CDS: -6.97 Total: -11.21 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.41 Total: 1.42 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -0.35 Total: -0.73 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: -0.31 Total: -3.13 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: -7.08 Total: -10.94 kcal Total LS contribution 6.60 Total: 6.60 kcal Total: -8.49 -9.51 -18.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13308374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.376 kcal (2) G-P(sol) polarization free energy of solvation -8.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds