Wall clock time and date at job start Sun Mar 7 2021 03:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36411 * 125.80081 * 2 1 4 4 C 1.47380 * 127.19421 * 0.02562 * 3 2 1 5 5 O 1.21618 * 119.99901 * 359.70088 * 4 3 2 6 6 N 1.34772 * 120.00301 * 179.70930 * 4 3 2 7 7 C 1.46501 * 120.00213 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47197 * 179.97438 * 7 6 4 9 9 C 1.38345 * 119.85527 * 89.99949 * 8 7 6 10 10 C 1.37976 * 120.14242 * 180.02562 * 9 8 7 11 11 C 1.39533 * 119.85515 * 359.97438 * 10 9 8 12 12 C 1.43205 * 120.14229 * 179.97438 * 11 10 9 13 13 C 9.66823 * 151.00358 * 180.47896 * 3 1 2 14 14 Si 9.37189 * 173.49170 * 358.38001 * 6 1 2 15 15 C 1.86303 * 109.47168 * 115.46809 * 14 13 12 16 16 C 1.86299 * 109.47225 * 235.46318 * 14 13 12 17 17 C 1.86293 * 109.47348 * 355.46402 * 14 13 12 18 18 C 1.39538 * 119.71837 * 0.24774 * 11 10 9 19 19 C 1.37976 * 119.85390 * 359.51589 * 18 11 10 20 20 C 1.47015 * 105.61584 * 179.75132 * 3 2 1 21 21 C 1.34180 * 105.95635 * 0.22839 * 20 3 2 22 22 C 1.50697 * 125.44142 * 179.97438 * 21 20 3 23 23 O 1.42898 * 109.46897 * 299.99893 * 22 21 20 24 24 Si 1.86292 * 109.47146 * 179.97438 * 22 21 20 25 25 H 1.48501 * 109.47303 * 59.99921 * 24 22 21 26 26 H 1.48500 * 109.47159 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47338 * 299.99880 * 24 22 21 28 28 O 1.33653 * 125.80297 * 180.13755 * 2 1 3 29 29 H 1.08997 * 109.47585 * 90.00120 * 1 2 3 30 30 H 1.09001 * 109.47312 * 210.00485 * 1 2 3 31 31 H 1.09011 * 109.47351 * 329.99836 * 1 2 3 32 32 H 0.97000 * 120.00143 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.46973 * 59.99452 * 7 6 4 34 34 H 1.09002 * 109.47199 * 299.99902 * 7 6 4 35 35 H 1.07999 * 119.93198 * 0.02562 * 9 8 7 36 36 H 1.08004 * 120.07207 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47332 * 59.99762 * 15 14 13 38 38 H 1.09002 * 109.47176 * 179.97438 * 15 14 13 39 39 H 1.09004 * 109.46801 * 299.99773 * 15 14 13 40 40 H 1.09001 * 109.47058 * 60.00018 * 16 14 13 41 41 H 1.09002 * 109.47329 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47529 * 300.00490 * 16 14 13 43 43 H 1.09001 * 109.47264 * 60.00441 * 17 14 13 44 44 H 1.09002 * 109.47236 * 180.02562 * 17 14 13 45 45 H 1.08998 * 109.47688 * 299.99834 * 17 14 13 46 46 H 1.07994 * 120.07419 * 179.72273 * 18 11 10 47 47 H 1.07997 * 119.92849 * 180.22787 * 19 18 11 48 48 H 1.08002 * 127.02300 * 180.20420 * 20 3 2 49 49 H 1.09007 * 109.47052 * 60.00056 * 22 21 20 50 50 H 0.96699 * 114.00233 * 299.99609 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.1064 0.0000 4 6 1.8739 2.5157 0.0005 5 8 0.6889 2.7892 -0.0045 6 7 2.7929 3.5015 0.0064 7 6 2.3644 4.9025 0.0063 8 6 3.5762 5.7984 0.0141 9 6 4.1362 6.2097 -1.1822 10 6 5.2460 7.0295 -1.1820 11 6 5.8030 7.4442 0.0283 12 6 6.9552 8.2947 0.0356 13 6 7.9005 8.9907 0.0392 14 14 9.4293 10.1188 0.0484 15 6 9.4868 11.0999 -1.5343 16 6 9.3322 11.2846 1.4983 17 6 10.9681 9.0782 0.1904 18 6 5.2362 7.0220 1.2314 19 6 4.1235 6.2062 1.2174 20 6 3.6848 0.5991 0.0061 21 6 3.5859 -0.7390 0.0041 22 6 4.7458 -1.7010 0.0080 23 8 5.5476 -1.4851 -1.1549 24 14 4.1026 -3.4494 0.0038 25 1 3.2798 -3.6712 -1.2123 26 1 5.2457 -4.3974 0.0083 27 1 3.2697 -3.6734 1.2127 28 8 2.2888 -1.0840 -0.0026 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 3.7381 3.2835 0.0106 33 1 1.7625 5.0983 0.8937 34 1 1.7711 5.1009 -0.8863 35 1 3.7039 5.8884 -2.1183 36 1 5.6825 7.3496 -2.1166 37 1 8.5865 11.7087 -1.6173 38 1 10.3637 11.7474 -1.5288 39 1 9.5437 10.4178 -2.3827 40 1 9.2985 10.7107 2.4244 41 1 10.2090 11.9321 1.5034 42 1 8.4319 11.8934 1.4154 43 1 11.0250 8.3962 -0.6580 44 1 11.8451 9.7255 0.1961 45 1 10.9345 8.5043 1.1164 46 1 5.6653 7.3358 2.1714 47 1 3.6816 5.8817 2.1479 48 1 4.5927 1.1840 0.0109 49 1 5.3496 -1.5385 0.9010 50 1 5.0741 -1.6126 -1.9884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13308374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:48:59 Heat of formation + Delta-G solvation = -30.373096 kcal Electronic energy + Delta-G solvation = -28834.317444 eV Core-core repulsion = 24724.552080 eV Total energy + Delta-G solvation = -4109.765364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.151 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.80967 -40.94504 -40.10230 -38.01948 -36.41700 -34.55051 -34.06589 -33.12476 -32.11585 -31.56861 -29.49672 -29.42058 -28.28707 -28.28593 -27.60624 -25.67487 -24.19380 -23.78209 -22.98301 -22.04091 -20.87351 -19.54657 -19.00772 -18.07273 -17.76840 -17.28795 -16.89748 -16.78988 -16.26165 -16.00492 -15.96764 -15.80014 -15.65276 -15.02071 -14.58522 -14.55131 -14.46190 -14.23641 -14.15828 -14.12146 -13.96075 -13.91793 -13.87439 -13.82816 -13.69574 -13.16650 -13.16307 -12.98768 -12.91699 -12.80034 -12.63283 -12.39264 -12.25529 -12.21503 -12.08382 -12.00136 -11.62007 -11.25739 -10.97207 -10.80208 -10.64531 -10.61192 -10.24761 -10.07857 -9.60040 -9.53853 -0.31127 0.18715 0.28359 0.79989 1.05816 1.33721 1.37813 1.44926 1.55286 1.70197 1.70418 1.89723 2.10473 2.20723 2.38912 2.44938 2.47440 2.98217 3.20859 3.46707 3.48053 3.71517 3.75386 3.76045 3.82783 3.90106 4.09748 4.25704 4.29032 4.39104 4.46619 4.56062 4.57135 4.58498 4.65473 4.77689 4.81772 4.83594 4.83629 4.86544 4.89505 4.89522 4.92289 4.95659 5.09213 5.17413 5.19559 5.28457 5.37462 5.42553 5.58440 5.68059 5.68216 5.79105 5.85881 6.40594 6.54235 6.56621 7.08149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.083 3.917 3 C -0.268 4.268 4 C 0.591 3.409 5 O -0.572 6.572 6 N -0.709 5.709 7 C 0.166 3.834 8 C -0.100 4.100 9 C -0.095 4.095 10 C -0.108 4.108 11 C -0.009 4.009 12 C -0.192 4.192 13 C -0.390 4.390 14 Si 1.202 2.798 15 C -0.462 4.462 16 C -0.462 4.462 17 C -0.462 4.462 18 C -0.108 4.108 19 C -0.095 4.095 20 C -0.145 4.145 21 C -0.063 4.063 22 C -0.032 4.032 23 O -0.537 6.537 24 Si 0.987 3.013 25 H -0.263 1.263 26 H -0.253 1.253 27 H -0.265 1.265 28 O -0.180 6.180 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.412 0.588 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.134 0.866 47 H 0.146 0.854 48 H 0.178 0.822 49 H 0.155 0.845 50 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 0.594 -0.080 4.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.030 3.970 3 C -0.272 4.272 4 C 0.380 3.620 5 O -0.453 6.453 6 N -0.360 5.360 7 C 0.044 3.956 8 C -0.100 4.100 9 C -0.113 4.113 10 C -0.126 4.126 11 C -0.009 4.009 12 C -0.192 4.192 13 C -0.421 4.421 14 Si 1.384 2.616 15 C -0.570 4.570 16 C -0.570 4.570 17 C -0.569 4.569 18 C -0.126 4.126 19 C -0.113 4.113 20 C -0.164 4.164 21 C -0.111 4.111 22 C -0.142 4.142 23 O -0.345 6.345 24 Si 0.810 3.190 25 H -0.187 1.187 26 H -0.177 1.177 27 H -0.189 1.189 28 O -0.077 6.077 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.248 0.752 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.152 0.848 47 H 0.164 0.836 48 H 0.195 0.805 49 H 0.172 0.828 50 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.556 -0.315 0.348 3.587 hybrid contribution -0.244 0.320 -0.387 0.558 sum 3.312 0.005 -0.039 3.312 Atomic orbital electron populations 1.20718 0.82575 1.05561 1.05266 1.23226 0.94799 0.82967 0.96000 1.21195 0.94291 0.93392 1.18319 1.17313 0.85092 0.84273 0.75326 1.90767 1.17785 1.84493 1.52289 1.45749 1.10205 1.05218 1.74835 1.20177 0.93490 0.78374 1.03586 1.19926 0.97194 0.99344 0.93579 1.21215 0.94993 0.96518 0.98622 1.21388 0.96335 0.97710 0.97209 1.16524 0.92757 0.96883 0.94728 1.21583 0.96493 0.99096 1.01995 1.37498 1.04748 1.01632 0.98245 0.76267 0.57371 0.61511 0.66476 1.26226 1.05329 1.09298 1.16128 1.26228 1.05381 1.11087 1.14296 1.26223 1.15847 1.10104 1.04766 1.21388 0.96236 0.97708 0.97304 1.21215 0.95034 0.96570 0.98529 1.22776 0.96347 0.93570 1.03691 1.23055 0.82760 0.96308 1.08948 1.24399 0.89968 1.06234 0.93616 1.86549 1.38605 1.93240 1.16068 0.85086 0.78825 0.74092 0.81011 1.18736 1.17711 1.18928 1.83680 1.17111 1.35295 1.71658 0.88231 0.88474 0.88274 0.75201 0.90278 0.90287 0.83642 0.84810 0.91282 0.89245 0.91178 0.91187 0.89240 0.91294 0.91226 0.89243 0.91226 0.84798 0.83627 0.80510 0.82790 0.75675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.10 9.89 71.24 0.70 0.61 16 2 C 0.08 0.38 7.37 25.26 0.19 0.56 16 3 C -0.27 -1.25 6.31 -18.99 -0.12 -1.37 16 4 C 0.59 3.78 7.81 86.65 0.68 4.46 16 5 O -0.57 -7.03 14.85 -4.09 -0.06 -7.09 16 6 N -0.71 -0.73 5.54 -470.15 -2.61 -3.34 16 7 C 0.17 0.09 5.79 85.63 0.50 0.58 16 8 C -0.10 -0.01 5.25 -19.81 -0.10 -0.11 16 9 C -0.10 -0.04 9.68 22.23 0.22 0.17 16 10 C -0.11 -0.37 9.75 22.52 0.22 -0.16 16 11 C -0.01 -0.06 5.72 -21.41 -0.12 -0.18 16 12 C -0.19 -1.57 13.24 30.02 0.40 -1.17 16 13 C -0.39 -1.62 12.14 74.32 0.90 -0.71 16 14 Si 1.20 -6.75 14.26 68.60 0.98 -5.77 16 15 C -0.46 2.18 8.65 113.37 0.98 3.16 16 16 C -0.46 2.17 8.65 113.37 0.98 3.15 16 17 C -0.46 2.21 8.65 113.37 0.98 3.19 16 18 C -0.11 -0.37 9.75 22.52 0.22 -0.15 16 19 C -0.10 -0.04 9.68 22.23 0.22 0.18 16 20 C -0.14 -0.10 10.46 23.65 0.25 0.15 16 21 C -0.06 -0.04 6.20 24.76 0.15 0.11 16 22 C -0.03 0.11 2.97 71.23 0.21 0.32 16 23 O -0.54 1.61 12.86 -148.98 -1.92 -0.31 16 24 Si 0.99 -1.71 27.37 68.60 1.88 0.17 16 25 H -0.26 -0.14 7.11 99.48 0.71 0.57 16 26 H -0.25 0.10 7.11 99.48 0.71 0.80 16 27 H -0.26 -0.34 7.11 99.48 0.71 0.37 16 28 O -0.18 -0.66 8.89 4.49 0.04 -0.62 16 29 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.10 0.40 6.49 -2.38 -0.02 0.38 16 32 H 0.41 -1.05 7.63 -92.71 -0.71 -1.75 16 33 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16 34 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16 35 H 0.15 -0.44 8.06 -2.91 -0.02 -0.46 16 36 H 0.13 0.20 8.06 -2.91 -0.02 0.18 16 37 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 38 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 39 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 40 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 41 H 0.09 -0.61 7.96 -2.39 -0.02 -0.62 16 42 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 43 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 44 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 45 H 0.07 -0.27 7.96 -2.39 -0.02 -0.28 16 46 H 0.13 0.19 8.06 -2.91 -0.02 0.17 16 47 H 0.15 -0.45 8.06 -2.91 -0.02 -0.47 16 48 H 0.18 -0.67 7.74 -2.91 -0.02 -0.69 16 49 H 0.15 -1.08 7.96 -2.38 -0.02 -1.10 16 50 H 0.39 -3.41 8.70 -74.06 -0.64 -4.05 16 Total: 0.00 -20.11 437.96 6.12 -13.99 By element: Atomic # 1 Polarization: -10.19 SS G_CDS: 0.37 Total: -9.82 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 7.44 Total: 12.79 kcal Atomic # 7 Polarization: -0.73 SS G_CDS: -2.61 Total: -3.34 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -1.94 Total: -8.02 kcal Atomic # 14 Polarization: -8.46 SS G_CDS: 2.86 Total: -5.60 kcal Total: -20.11 6.12 -13.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13308374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.384 kcal (2) G-P(sol) polarization free energy of solvation -20.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds