Wall clock time and date at job start Sun Mar 7 2021 03:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21578 * 120.00327 * 0.02562 * 13 12 11 15 15 C 1.47542 * 119.99173 * 179.97438 * 13 12 11 16 16 C 1.39661 * 120.19609 * 359.73360 * 15 13 12 17 17 C 1.37829 * 119.90919 * 179.76419 * 16 15 13 18 18 C 1.38506 * 120.29704 * 0.50554 * 17 16 15 19 19 C 1.50699 * 119.80414 * 179.71925 * 18 17 16 20 20 O 1.42904 * 109.46932 * 120.02591 * 19 18 17 21 21 Si 1.86295 * 109.47160 * 0.02799 * 19 18 17 22 22 H 1.48497 * 109.47569 * 59.99801 * 21 19 18 23 23 H 1.48501 * 109.47061 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47124 * 299.99411 * 21 19 18 25 25 C 1.38096 * 120.39246 * 359.74565 * 18 17 16 26 26 C 1.38671 * 120.08286 * 0.02562 * 25 18 17 27 27 O 1.35655 * 120.14977 * 180.02562 * 26 25 18 28 28 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 29 29 C 1.37976 * 120.14217 * 0.02562 * 28 10 9 30 30 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 31 31 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 32 32 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 35 35 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 36 36 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 37 37 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 38 38 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 39 39 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 40 40 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 41 41 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 42 42 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 43 43 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 44 44 H 1.08002 * 120.04560 * 359.97438 * 16 15 13 45 45 H 1.07998 * 119.85499 * 180.25193 * 17 16 15 46 46 H 1.08999 * 109.47303 * 240.02080 * 19 18 17 47 47 H 0.96698 * 114.00189 * 299.99658 * 20 19 18 48 48 H 1.08001 * 119.96219 * 180.02562 * 25 18 17 49 49 H 0.96701 * 113.99534 * 269.97629 * 27 26 25 50 50 H 1.07999 * 119.93193 * 179.97438 * 28 10 9 51 51 H 1.08003 * 120.07184 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0659 -5.7506 9.3162 15 6 3.0226 -6.8653 9.1398 16 6 1.8251 -7.0117 8.4363 17 6 0.8929 -7.9382 8.8515 18 6 1.1336 -8.7184 9.9703 19 6 0.1039 -9.7235 10.4182 20 8 0.6766 -11.0327 10.3994 21 14 -1.3591 -9.6692 9.2661 22 1 -0.9157 -9.9958 7.8870 23 1 -2.3740 -10.6592 9.7078 24 1 -1.9543 -8.3088 9.2856 25 6 2.3112 -8.5803 10.6783 26 6 3.2622 -7.6564 10.2719 27 8 4.4197 -7.5200 10.9660 28 6 3.5437 -2.2708 6.0695 29 6 3.0807 -1.6156 4.9469 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5739 1.7566 0.0005 34 1 2.1205 2.2703 -0.8900 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9058 -1.5212 37 1 2.1207 -0.3643 -2.4111 38 1 3.5740 -0.8777 -1.5214 39 1 4.3313 -3.6977 2.5772 40 1 5.1551 -4.8441 4.5914 41 1 5.7241 -4.6519 6.9391 42 1 4.9599 -3.4146 7.9655 43 1 2.9639 -5.2230 7.1154 44 1 1.6311 -6.4022 7.5660 45 1 -0.0311 -8.0535 8.3044 46 1 -0.2216 -9.4839 11.4305 47 1 0.9888 -11.3129 9.5282 48 1 2.4918 -9.1925 11.5494 49 1 4.3770 -6.8662 11.6773 50 1 3.3239 -1.8784 7.0514 51 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_13422076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:49:34 Heat of formation + Delta-G solvation = -59.622179 kcal Electronic energy + Delta-G solvation = -30147.930564 eV Core-core repulsion = 25908.670725 eV Total energy + Delta-G solvation = -4239.259840 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 383.151 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.65044 -40.63886 -39.71990 -38.43073 -37.17680 -36.22836 -34.38025 -32.97289 -32.11878 -31.33019 -31.14713 -29.66324 -28.50085 -28.49601 -28.09667 -26.71221 -23.97045 -23.78587 -23.60115 -22.77148 -21.55125 -19.61452 -19.51306 -18.81194 -18.36910 -17.46443 -16.83212 -16.65261 -16.58327 -16.30574 -16.16553 -16.04008 -15.84547 -15.73168 -15.30519 -15.16692 -14.59312 -14.56938 -14.41023 -14.31764 -14.15147 -14.07987 -13.98431 -13.90520 -13.76135 -13.39424 -13.38902 -13.26736 -13.17806 -12.92323 -12.65548 -12.46902 -12.38033 -12.22362 -12.17750 -12.11920 -12.07804 -11.62764 -11.60133 -11.02310 -10.85915 -10.76361 -10.58498 -10.22494 -10.08970 -10.04498 -9.79703 -9.49758 -0.42588 -0.27967 0.08318 0.28388 1.00760 1.32628 1.33810 1.39396 1.48341 1.56429 1.75856 1.80567 2.02086 2.30318 2.30877 2.40900 2.56634 3.03120 3.09616 3.32742 3.40160 3.50067 3.60026 3.73007 3.74545 3.82767 3.89245 3.95740 4.19253 4.25945 4.27536 4.35948 4.53229 4.59327 4.61525 4.62996 4.63218 4.67256 4.67660 4.67721 4.67901 4.69803 4.83592 4.93151 4.93948 5.09778 5.16839 5.18880 5.29702 5.36907 5.39051 5.42487 5.46426 5.47056 5.51245 5.78749 6.41321 6.41528 6.66754 6.70315 7.18899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.143 2.857 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.388 4.388 6 C -0.145 4.145 7 C 0.014 3.986 8 C -0.099 4.099 9 C -0.098 4.098 10 C -0.105 4.105 11 C 0.162 3.838 12 N -0.726 5.726 13 C 0.559 3.441 14 O -0.517 6.517 15 C -0.165 4.165 16 C -0.064 4.064 17 C -0.144 4.144 18 C -0.076 4.076 19 C -0.086 4.086 20 O -0.535 6.535 21 Si 0.951 3.049 22 H -0.249 1.249 23 H -0.251 1.251 24 H -0.249 1.249 25 C -0.127 4.127 26 C 0.174 3.826 27 O -0.476 6.476 28 C -0.098 4.098 29 C -0.099 4.099 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.400 0.600 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.123 0.877 47 H 0.378 0.622 48 H 0.143 0.857 49 H 0.398 0.602 50 H 0.131 0.869 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.787 2.268 -3.553 6.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.329 2.671 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.422 4.422 6 C -0.145 4.145 7 C 0.013 3.987 8 C -0.116 4.116 9 C -0.116 4.116 10 C -0.105 4.105 11 C 0.039 3.961 12 N -0.379 5.379 13 C 0.346 3.654 14 O -0.393 6.393 15 C -0.168 4.168 16 C -0.083 4.083 17 C -0.162 4.162 18 C -0.077 4.077 19 C -0.197 4.197 20 O -0.340 6.340 21 Si 0.773 3.227 22 H -0.173 1.173 23 H -0.175 1.175 24 H -0.172 1.172 25 C -0.145 4.145 26 C 0.127 3.873 27 O -0.287 6.287 28 C -0.116 4.116 29 C -0.117 4.117 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.236 0.764 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.226 0.774 48 H 0.161 0.839 49 H 0.257 0.743 50 H 0.149 0.851 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.603 1.940 -3.280 5.976 hybrid contribution 0.134 0.230 0.014 0.267 sum -4.469 2.170 -3.266 5.945 Atomic orbital electron populations 1.26119 1.19992 1.04952 1.04959 0.77016 0.66003 0.64709 0.59384 1.26119 1.06733 1.18240 1.04957 1.26116 1.06721 1.08424 1.14783 1.36088 1.00236 1.01216 1.04699 1.20973 0.99662 0.98723 0.95117 1.16256 0.98211 0.94513 0.89679 1.21260 0.96937 0.94230 0.99223 1.21059 0.99300 0.99840 0.91402 1.19959 0.99749 0.96384 0.94433 1.20214 0.91513 0.90827 0.93510 1.45986 1.22401 1.39639 1.29892 1.18046 0.86424 0.80501 0.80425 1.90843 1.26143 1.67645 1.54621 1.20400 0.96145 1.00375 0.99901 1.21129 0.91851 0.96900 0.98370 1.20977 1.00169 0.97733 0.97348 1.20434 0.95988 0.96750 0.94537 1.25104 1.01651 0.82966 1.09947 1.86543 1.81835 1.29452 1.36185 0.85651 0.77165 0.81543 0.78319 1.17296 1.17514 1.17247 1.21342 0.92320 0.99293 1.01552 1.18506 0.85217 0.92728 0.90839 1.84765 1.30102 1.63687 1.50156 1.21048 0.96920 0.94775 0.98872 1.21256 0.99478 0.99945 0.90990 0.90913 0.90363 0.90919 0.90889 0.90361 0.90912 0.90914 0.90361 0.90891 0.85279 0.85106 0.90106 0.90123 0.76419 0.84961 0.85314 0.85899 0.77418 0.83897 0.74316 0.85126 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.08 8.65 101.05 0.87 1.95 16 2 Si 1.14 -3.32 14.26 -169.99 -2.42 -5.75 16 3 C -0.45 1.03 8.65 101.05 0.87 1.90 16 4 C -0.45 1.06 8.65 101.05 0.87 1.93 16 5 C -0.39 -0.52 12.14 29.55 0.36 -0.16 16 6 C -0.14 -0.43 13.24 -38.83 -0.51 -0.95 16 7 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 8 C -0.10 -0.09 9.75 -39.19 -0.38 -0.47 16 9 C -0.10 0.02 9.68 -39.64 -0.38 -0.36 16 10 C -0.10 0.04 5.25 -104.55 -0.55 -0.51 16 11 C 0.16 -0.01 5.79 -5.19 -0.03 -0.04 16 12 N -0.73 0.08 5.50 -62.53 -0.34 -0.27 16 13 C 0.56 1.47 7.76 -12.47 -0.10 1.38 16 14 O -0.52 -3.19 15.16 -16.58 -0.25 -3.44 16 15 C -0.16 -0.22 5.89 -104.84 -0.62 -0.84 16 16 C -0.06 0.06 9.54 -39.20 -0.37 -0.31 16 17 C -0.14 0.17 8.65 -39.63 -0.34 -0.18 16 18 C -0.08 0.05 5.39 -104.58 -0.56 -0.51 16 19 C -0.09 0.14 2.81 36.01 0.10 0.24 16 20 O -0.54 0.27 12.76 -35.23 -0.45 -0.18 16 21 Si 0.95 -1.75 25.05 -169.99 -4.26 -6.01 16 22 H -0.25 0.42 7.11 56.52 0.40 0.82 16 23 H -0.25 0.04 7.11 56.52 0.40 0.44 16 24 H -0.25 0.38 7.11 56.52 0.40 0.78 16 25 C -0.13 -0.06 9.53 -39.47 -0.38 -0.44 16 26 C 0.17 0.33 6.72 -38.69 -0.26 0.07 16 27 O -0.48 -1.31 11.58 -40.54 -0.47 -1.78 16 28 C -0.10 0.04 9.68 -39.64 -0.38 -0.35 16 29 C -0.10 -0.08 9.75 -39.19 -0.38 -0.46 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 34 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 36 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 37 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 39 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 40 H 0.13 -0.21 8.06 -52.49 -0.42 -0.63 16 41 H 0.08 0.05 8.08 -51.93 -0.42 -0.37 16 42 H 0.08 0.02 8.08 -51.93 -0.42 -0.40 16 43 H 0.40 -0.88 6.49 -40.82 -0.27 -1.14 16 44 H 0.13 -0.47 6.40 -52.49 -0.34 -0.81 16 45 H 0.13 -0.35 4.85 -52.49 -0.25 -0.60 16 46 H 0.12 -0.31 7.96 -51.93 -0.41 -0.72 16 47 H 0.38 -1.35 8.70 45.56 0.40 -0.96 16 48 H 0.14 0.00 8.06 -52.49 -0.42 -0.43 16 49 H 0.40 -0.41 9.06 45.56 0.41 0.00 16 50 H 0.13 -0.25 8.06 -52.49 -0.42 -0.67 16 51 H 0.13 -0.03 8.06 -52.48 -0.42 -0.46 16 LS Contribution 440.48 15.07 6.64 6.64 Total: 0.00 -10.10 440.48 -10.27 -20.37 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: -5.93 Total: -10.89 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.79 Total: 1.31 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -0.34 Total: -0.27 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -1.17 Total: -5.40 kcal Atomic # 14 Polarization: -5.07 SS G_CDS: -6.68 Total: -11.75 kcal Total LS contribution 6.64 Total: 6.64 kcal Total: -10.10 -10.27 -20.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13422076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.252 kcal (2) G-P(sol) polarization free energy of solvation -10.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds