Wall clock time and date at job start Sun Mar 7 2021 03:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21578 * 120.00327 * 0.02562 * 13 12 11 15 15 C 1.47542 * 119.99173 * 179.97438 * 13 12 11 16 16 C 1.39661 * 120.19609 * 359.73360 * 15 13 12 17 17 C 1.37829 * 119.90919 * 179.76419 * 16 15 13 18 18 C 1.38506 * 120.29704 * 0.50554 * 17 16 15 19 19 C 1.50699 * 119.80414 * 179.71925 * 18 17 16 20 20 O 1.42904 * 109.46932 * 120.02591 * 19 18 17 21 21 Si 1.86295 * 109.47160 * 0.02799 * 19 18 17 22 22 H 1.48497 * 109.47569 * 59.99801 * 21 19 18 23 23 H 1.48501 * 109.47061 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47124 * 299.99411 * 21 19 18 25 25 C 1.38096 * 120.39246 * 359.74565 * 18 17 16 26 26 C 1.38671 * 120.08286 * 0.02562 * 25 18 17 27 27 O 1.35655 * 120.14977 * 180.02562 * 26 25 18 28 28 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 29 29 C 1.37976 * 120.14217 * 0.02562 * 28 10 9 30 30 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 31 31 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 32 32 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 35 35 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 36 36 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 37 37 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 38 38 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 39 39 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 40 40 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 41 41 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 42 42 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 43 43 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 44 44 H 1.08002 * 120.04560 * 359.97438 * 16 15 13 45 45 H 1.07998 * 119.85499 * 180.25193 * 17 16 15 46 46 H 1.08999 * 109.47303 * 240.02080 * 19 18 17 47 47 H 0.96698 * 114.00189 * 299.99658 * 20 19 18 48 48 H 1.08001 * 119.96219 * 180.02562 * 25 18 17 49 49 H 0.96701 * 113.99534 * 269.97629 * 27 26 25 50 50 H 1.07999 * 119.93193 * 179.97438 * 28 10 9 51 51 H 1.08003 * 120.07184 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0659 -5.7506 9.3162 15 6 3.0226 -6.8653 9.1398 16 6 1.8251 -7.0117 8.4363 17 6 0.8929 -7.9382 8.8515 18 6 1.1336 -8.7184 9.9703 19 6 0.1039 -9.7235 10.4182 20 8 0.6766 -11.0327 10.3994 21 14 -1.3591 -9.6692 9.2661 22 1 -0.9157 -9.9958 7.8870 23 1 -2.3740 -10.6592 9.7078 24 1 -1.9543 -8.3088 9.2856 25 6 2.3112 -8.5803 10.6783 26 6 3.2622 -7.6564 10.2719 27 8 4.4197 -7.5200 10.9660 28 6 3.5437 -2.2708 6.0695 29 6 3.0807 -1.6156 4.9469 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5739 1.7566 0.0005 34 1 2.1205 2.2703 -0.8900 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9058 -1.5212 37 1 2.1207 -0.3643 -2.4111 38 1 3.5740 -0.8777 -1.5214 39 1 4.3313 -3.6977 2.5772 40 1 5.1551 -4.8441 4.5914 41 1 5.7241 -4.6519 6.9391 42 1 4.9599 -3.4146 7.9655 43 1 2.9639 -5.2230 7.1154 44 1 1.6311 -6.4022 7.5660 45 1 -0.0311 -8.0535 8.3044 46 1 -0.2216 -9.4839 11.4305 47 1 0.9888 -11.3129 9.5282 48 1 2.4918 -9.1925 11.5494 49 1 4.3770 -6.8662 11.6773 50 1 3.3239 -1.8784 7.0514 51 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13422076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:49:33 Heat of formation + Delta-G solvation = -55.370649 kcal Electronic energy + Delta-G solvation = -30147.746204 eV Core-core repulsion = 25908.670725 eV Total energy + Delta-G solvation = -4239.075479 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 383.151 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.71017 -40.64746 -39.80273 -38.45802 -37.15824 -36.33728 -34.46213 -32.97721 -32.11746 -31.37167 -31.14503 -29.46329 -28.29113 -28.28810 -28.10007 -26.70053 -23.93376 -23.78232 -23.62411 -22.79807 -21.63238 -19.64454 -19.53512 -18.84733 -18.32425 -17.51149 -16.88759 -16.67433 -16.59927 -16.21827 -16.17629 -16.01326 -15.82579 -15.81428 -15.28670 -15.13634 -14.57969 -14.54933 -14.41989 -14.14447 -14.10507 -13.91851 -13.89790 -13.83922 -13.80720 -13.27673 -13.17078 -13.16568 -12.99090 -12.90447 -12.63571 -12.39233 -12.37115 -12.24211 -12.13858 -12.05885 -12.00352 -11.62152 -11.57362 -11.05989 -10.79839 -10.64832 -10.52620 -10.31830 -10.08719 -10.02920 -9.79630 -9.53962 -0.44294 -0.31531 0.11683 0.28116 1.15351 1.37610 1.48939 1.52699 1.54123 1.68133 1.69968 1.93995 2.04192 2.38682 2.41563 2.47165 2.54152 2.97529 3.11493 3.42562 3.46615 3.55841 3.64914 3.75108 3.78194 3.82784 3.90105 4.02701 4.24384 4.25101 4.29060 4.44425 4.57977 4.58132 4.65672 4.74186 4.81114 4.83133 4.83401 4.86256 4.89124 4.89197 4.91922 4.95658 4.98387 5.11248 5.17748 5.20944 5.23194 5.37426 5.42406 5.56948 5.58158 5.67704 5.67962 5.78852 6.38391 6.56487 6.66212 6.71583 7.08281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.203 2.797 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.390 4.390 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.108 4.108 9 C -0.096 4.096 10 C -0.100 4.100 11 C 0.166 3.834 12 N -0.711 5.711 13 C 0.557 3.443 14 O -0.560 6.560 15 C -0.181 4.181 16 C -0.055 4.055 17 C -0.146 4.146 18 C -0.071 4.071 19 C -0.088 4.088 20 O -0.552 6.552 21 Si 0.985 3.015 22 H -0.247 1.247 23 H -0.278 1.278 24 H -0.248 1.248 25 C -0.134 4.134 26 C 0.157 3.843 27 O -0.497 6.497 28 C -0.094 4.094 29 C -0.108 4.108 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.412 0.588 44 H 0.160 0.840 45 H 0.149 0.851 46 H 0.130 0.870 47 H 0.390 0.610 48 H 0.142 0.858 49 H 0.408 0.592 50 H 0.147 0.853 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 2.581 -4.705 8.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.384 2.616 3 C -0.571 4.571 4 C -0.570 4.570 5 C -0.421 4.421 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.126 4.126 9 C -0.114 4.114 10 C -0.100 4.100 11 C 0.043 3.957 12 N -0.364 5.364 13 C 0.346 3.654 14 O -0.440 6.440 15 C -0.184 4.184 16 C -0.073 4.073 17 C -0.163 4.163 18 C -0.072 4.072 19 C -0.198 4.198 20 O -0.359 6.359 21 Si 0.808 3.192 22 H -0.170 1.170 23 H -0.203 1.203 24 H -0.171 1.171 25 C -0.153 4.153 26 C 0.110 3.890 27 O -0.310 6.310 28 C -0.112 4.112 29 C -0.126 4.126 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.250 0.750 44 H 0.178 0.822 45 H 0.166 0.834 46 H 0.148 0.852 47 H 0.240 0.760 48 H 0.160 0.840 49 H 0.269 0.731 50 H 0.165 0.835 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.936 2.255 -4.440 7.749 hybrid contribution 0.511 0.125 0.354 0.634 sum -5.425 2.381 -4.087 7.197 Atomic orbital electron populations 1.26217 1.20381 1.04921 1.05378 0.76255 0.64961 0.63268 0.57110 1.26240 1.06535 1.18927 1.05365 1.26228 1.06566 1.08552 1.15661 1.37476 0.99205 1.00416 1.05039 1.21581 1.01094 1.00133 0.96318 1.16522 0.99007 0.95218 0.90098 1.21380 0.97151 0.94199 0.99875 1.21210 0.98972 1.00126 0.91092 1.19911 0.99640 0.96335 0.94137 1.20154 0.91326 0.90686 0.93516 1.45872 1.22731 1.38776 1.29063 1.18286 0.86080 0.80611 0.80466 1.90816 1.27932 1.69086 1.56143 1.20413 0.96910 1.00668 1.00453 1.21406 0.90626 0.96732 0.98557 1.21229 1.00779 0.97218 0.97089 1.20591 0.95570 0.96662 0.94377 1.25243 1.01440 0.82336 1.10793 1.86514 1.82011 1.29889 1.37506 0.85172 0.75635 0.80538 0.77830 1.17004 1.20346 1.17148 1.21360 0.92685 0.99266 1.01951 1.18740 0.85324 0.93581 0.91333 1.84718 1.31116 1.64330 1.50845 1.21215 0.96279 0.94479 0.99255 1.21393 0.99861 1.00380 0.90936 0.91177 0.89277 0.91190 0.91341 0.89267 0.91208 0.91160 0.89280 0.91279 0.84857 0.83750 0.90685 0.90294 0.75023 0.82243 0.83368 0.85198 0.76044 0.83992 0.73146 0.83501 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.51 8.65 113.37 0.98 3.50 16 2 Si 1.20 -7.42 14.26 68.60 0.98 -6.44 16 3 C -0.46 2.32 8.65 113.37 0.98 3.30 16 4 C -0.46 2.41 8.65 113.37 0.98 3.39 16 5 C -0.39 -1.33 12.14 74.32 0.90 -0.42 16 6 C -0.19 -1.40 13.24 30.02 0.40 -1.00 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.17 16 8 C -0.11 -0.28 9.75 22.52 0.22 -0.06 16 9 C -0.10 0.04 9.68 22.23 0.22 0.25 16 10 C -0.10 0.09 5.25 -19.81 -0.10 -0.01 16 11 C 0.17 0.00 5.79 85.63 0.50 0.49 16 12 N -0.71 0.32 5.50 -470.00 -2.58 -2.27 16 13 C 0.56 3.28 7.76 86.70 0.67 3.95 16 14 O -0.56 -7.80 15.16 16.95 0.26 -7.54 16 15 C -0.18 -0.54 5.89 -20.01 -0.12 -0.65 16 16 C -0.05 0.17 9.54 22.52 0.21 0.39 16 17 C -0.15 0.55 8.65 22.24 0.19 0.74 16 18 C -0.07 0.13 5.39 -19.83 -0.11 0.02 16 19 C -0.09 0.33 2.81 71.24 0.20 0.53 16 20 O -0.55 0.70 12.76 -148.98 -1.90 -1.20 16 21 Si 0.99 -4.67 25.05 68.60 1.72 -2.95 16 22 H -0.25 1.27 7.11 99.48 0.71 1.98 16 23 H -0.28 0.06 7.11 99.48 0.71 0.77 16 24 H -0.25 1.19 7.11 99.48 0.71 1.90 16 25 C -0.13 -0.21 9.53 22.34 0.21 0.01 16 26 C 0.16 0.75 6.72 22.84 0.15 0.91 16 27 O -0.50 -3.70 11.58 -68.79 -0.80 -4.49 16 28 C -0.09 0.08 9.68 22.23 0.22 0.30 16 29 C -0.11 -0.24 9.75 22.52 0.22 -0.02 16 30 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 31 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 32 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 33 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 34 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 35 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 37 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 38 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 39 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 40 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 41 H 0.07 0.13 8.08 -2.39 -0.02 0.11 16 42 H 0.08 0.06 8.08 -2.39 -0.02 0.04 16 43 H 0.41 -2.26 6.49 -92.71 -0.60 -2.86 16 44 H 0.16 -1.50 6.40 -2.91 -0.02 -1.52 16 45 H 0.15 -1.15 4.85 -2.91 -0.01 -1.16 16 46 H 0.13 -0.71 7.96 -2.39 -0.02 -0.73 16 47 H 0.39 -2.92 8.70 -74.06 -0.64 -3.57 16 48 H 0.14 0.15 8.06 -2.91 -0.02 0.13 16 49 H 0.41 0.08 9.06 -74.06 -0.67 -0.59 16 50 H 0.15 -0.66 8.06 -2.91 -0.02 -0.69 16 51 H 0.13 0.03 8.06 -2.91 -0.02 0.01 16 Total: 0.00 -24.27 440.48 4.30 -19.97 By element: Atomic # 1 Polarization: -10.35 SS G_CDS: -0.18 Total: -10.53 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 6.80 Total: 15.45 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -2.58 Total: -2.27 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -2.44 Total: -13.24 kcal Atomic # 14 Polarization: -12.08 SS G_CDS: 2.70 Total: -9.38 kcal Total: -24.27 4.30 -19.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13422076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.400 kcal (2) G-P(sol) polarization free energy of solvation -24.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds