Wall clock time and date at job start Sun Mar 7 2021 03:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38498 * 119.85143 * 2 1 4 4 C 1.38102 * 120.39269 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.95951 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47252 * 104.98270 * 5 4 3 7 7 Si 1.86296 * 109.47340 * 344.97704 * 5 4 3 8 8 H 1.48506 * 109.46791 * 60.00075 * 7 5 4 9 9 H 1.48490 * 109.47478 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47206 * 300.00644 * 7 5 4 11 11 C 1.38665 * 120.08000 * 0.02562 * 4 3 2 12 12 O 1.35657 * 120.14826 * 180.02562 * 11 4 3 13 13 C 1.40168 * 119.70469 * 0.02562 * 11 4 3 14 14 C 1.47536 * 120.19499 * 180.02562 * 13 11 4 15 15 O 1.21589 * 120.00119 * 359.97438 * 14 13 11 16 16 N 1.34780 * 120.00140 * 179.97438 * 14 13 11 17 17 C 1.46500 * 120.00000 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47221 * 179.97438 * 17 16 14 19 19 C 1.38346 * 119.85593 * 269.72604 * 18 17 16 20 20 C 1.37970 * 120.14219 * 179.75992 * 19 18 17 21 21 C 1.39543 * 119.85451 * 0.51493 * 20 19 18 22 22 C 1.43194 * 120.14100 * 179.72056 * 21 20 19 23 23 C 9.67134 * 86.24519 * 179.97438 * 13 1 2 24 24 Si 9.37330 * 102.96421 * 179.97438 * 16 1 2 25 25 C 1.86298 * 109.47042 * 174.07699 * 24 23 22 26 26 C 1.86301 * 109.47375 * 294.07839 * 24 23 22 27 27 C 1.86301 * 109.47236 * 54.07832 * 24 23 22 28 28 C 1.39540 * 119.71487 * 359.74006 * 21 20 19 29 29 C 1.37970 * 119.85678 * 0.02562 * 28 21 20 30 30 C 1.37832 * 119.84716 * 180.02562 * 2 1 3 31 31 H 1.08992 * 109.47207 * 269.98198 * 1 2 3 32 32 H 1.09006 * 109.46934 * 29.97604 * 1 2 3 33 33 H 1.08999 * 109.47450 * 149.97342 * 1 2 3 34 34 H 1.08000 * 119.81010 * 0.04294 * 3 2 1 35 35 H 1.09006 * 109.47010 * 224.97964 * 5 4 3 36 36 H 0.96705 * 113.99544 * 300.00207 * 6 5 4 37 37 H 0.96701 * 114.00551 * 269.97988 * 12 11 4 38 38 H 0.96995 * 120.00019 * 359.97438 * 16 14 13 39 39 H 1.09000 * 109.47450 * 300.00182 * 17 16 14 40 40 H 1.09005 * 109.46901 * 60.00296 * 17 16 14 41 41 H 1.08000 * 119.92974 * 359.97438 * 19 18 17 42 42 H 1.08002 * 120.07591 * 180.23189 * 20 19 18 43 43 H 1.09000 * 109.46797 * 60.00271 * 25 24 23 44 44 H 1.08996 * 109.47320 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47159 * 300.00019 * 25 24 23 46 46 H 1.09000 * 109.46989 * 59.99736 * 26 24 23 47 47 H 1.08996 * 109.47390 * 180.02562 * 26 24 23 48 48 H 1.08996 * 109.46872 * 300.00507 * 26 24 23 49 49 H 1.09001 * 109.47139 * 59.99874 * 27 24 23 50 50 H 1.09003 * 109.47235 * 179.97438 * 27 24 23 51 51 H 1.08997 * 109.47404 * 299.99963 * 27 24 23 52 52 H 1.08001 * 120.06938 * 179.97438 * 28 21 20 53 53 H 1.07998 * 119.93152 * 179.97438 * 29 28 21 54 54 H 1.08000 * 120.04630 * 0.25375 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2012 0.0000 4 6 3.5773 1.2143 -0.0005 5 6 4.3175 2.5270 0.0001 6 8 4.8554 2.7699 1.3014 7 14 3.1448 3.9015 -0.4538 8 1 2.0393 3.9561 0.5363 9 1 3.8742 5.1948 -0.4539 10 1 2.5858 3.6489 -1.8062 11 6 4.2836 0.0210 -0.0016 12 8 5.6402 0.0322 -0.0016 13 6 3.5897 -1.1969 -0.0027 14 6 4.3303 -2.4729 -0.0033 15 8 5.5462 -2.4701 -0.0033 16 7 3.6591 -3.6417 -0.0038 17 6 4.3945 -4.9087 -0.0049 18 6 3.4179 -6.0564 -0.0047 19 6 2.9769 -6.5852 1.1952 20 6 2.0790 -7.6327 1.2024 21 6 1.6240 -8.1659 -0.0042 22 6 0.6967 -9.2570 -0.0040 23 6 -0.0636 -10.1516 -0.0186 24 14 -1.2940 -11.5994 -0.0080 25 6 -1.8419 -11.9614 -1.7514 26 6 -0.4711 -13.1086 0.7103 27 6 -2.7755 -11.1479 1.0274 28 6 2.0768 -7.6314 -1.2111 29 6 2.9710 -6.5807 -1.2044 30 6 2.1930 -1.1955 -0.0005 31 1 -0.3633 -0.0003 1.0276 32 1 -0.3633 0.8903 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6508 2.1333 0.0007 35 1 5.1289 2.4869 -0.7267 36 1 4.1884 2.8181 2.0000 37 1 6.0335 0.0359 -0.8850 38 1 2.6891 -3.6439 -0.0034 39 1 5.0210 -4.9644 -0.8952 40 1 5.0216 -4.9656 0.8848 41 1 3.3335 -6.1749 2.1284 42 1 1.7325 -8.0423 2.1398 43 1 -0.9751 -12.2256 -2.3572 44 1 -2.5474 -12.7922 -1.7455 45 1 -2.3234 -11.0784 -2.1717 46 1 -0.1505 -12.8968 1.7303 47 1 -1.1767 -13.9393 0.7159 48 1 0.3957 -13.3727 0.1045 49 1 -3.2570 -10.2649 0.6072 50 1 -3.4815 -11.9783 1.0331 51 1 -2.4550 -10.9361 2.0474 52 1 1.7287 -8.0399 -2.1483 53 1 3.3226 -6.1664 -2.1377 54 1 1.6512 -2.1298 -0.0051 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13422088.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:49:55 Heat of formation + Delta-G solvation = -59.764192 kcal Electronic energy + Delta-G solvation = -32501.922498 eV Core-core repulsion = 28107.118882 eV Total energy + Delta-G solvation = -4394.803617 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 397.167 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.80237 -40.69917 -39.86419 -38.07422 -37.64908 -36.35156 -34.48406 -33.11550 -32.98426 -32.12342 -31.34660 -29.46084 -28.29098 -28.28531 -27.72133 -27.45030 -26.77561 -24.84099 -23.78700 -22.92529 -21.98393 -21.52297 -19.72962 -19.55050 -18.56094 -18.23145 -17.49043 -16.95940 -16.71758 -16.68828 -16.34657 -16.04740 -15.95855 -15.90041 -15.70818 -15.07691 -14.96352 -14.59607 -14.54423 -14.46825 -14.41928 -14.15871 -14.11723 -13.89945 -13.83730 -13.76219 -13.69563 -13.36315 -13.16917 -13.16384 -12.98845 -12.94453 -12.64762 -12.56523 -12.39479 -12.26355 -12.21986 -12.15294 -12.00480 -11.82763 -11.66985 -11.62322 -11.08207 -10.80211 -10.64548 -10.38438 -10.36536 -10.10393 -10.05892 -9.54317 -9.53209 -0.38951 -0.32086 0.05110 0.27626 1.11768 1.37439 1.41480 1.51052 1.53781 1.67328 1.69761 1.89129 2.04413 2.38649 2.41140 2.47233 2.53383 2.97112 3.15515 3.38857 3.46179 3.53648 3.64255 3.74385 3.76211 3.81884 3.89641 4.07637 4.15386 4.24241 4.28410 4.36070 4.49635 4.57378 4.59215 4.61053 4.77716 4.80429 4.83193 4.83540 4.83703 4.86540 4.89279 4.89579 4.92226 4.94182 4.95106 5.14051 5.17493 5.18957 5.22555 5.36852 5.37579 5.41903 5.58367 5.63714 5.67759 5.68365 5.78244 6.37588 6.56139 6.68119 6.74382 7.07875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.087 4.087 4 C -0.158 4.158 5 C -0.081 4.081 6 O -0.551 6.551 7 Si 0.988 3.012 8 H -0.238 1.238 9 H -0.275 1.275 10 H -0.249 1.249 11 C 0.170 3.830 12 O -0.488 6.488 13 C -0.180 4.180 14 C 0.557 3.443 15 O -0.560 6.560 16 N -0.711 5.711 17 C 0.166 3.834 18 C -0.100 4.100 19 C -0.096 4.096 20 C -0.108 4.108 21 C -0.008 4.008 22 C -0.191 4.191 23 C -0.390 4.390 24 Si 1.201 2.799 25 C -0.461 4.461 26 C -0.464 4.464 27 C -0.461 4.461 28 C -0.107 4.107 29 C -0.094 4.094 30 C -0.062 4.062 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.114 0.886 36 H 0.386 0.614 37 H 0.403 0.597 38 H 0.412 0.588 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.134 0.866 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.069 0.931 52 H 0.135 0.865 53 H 0.147 0.853 54 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.422 -2.038 -1.919 9.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.096 4.096 3 C -0.105 4.105 4 C -0.159 4.159 5 C -0.190 4.190 6 O -0.358 6.358 7 Si 0.810 3.190 8 H -0.162 1.162 9 H -0.201 1.201 10 H -0.173 1.173 11 C 0.123 3.877 12 O -0.301 6.301 13 C -0.184 4.184 14 C 0.346 3.654 15 O -0.439 6.439 16 N -0.364 5.364 17 C 0.043 3.957 18 C -0.100 4.100 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.008 4.008 22 C -0.191 4.191 23 C -0.421 4.421 24 Si 1.382 2.618 25 C -0.569 4.569 26 C -0.571 4.571 27 C -0.569 4.569 28 C -0.125 4.125 29 C -0.112 4.112 30 C -0.080 4.080 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.166 0.834 35 H 0.132 0.868 36 H 0.234 0.766 37 H 0.262 0.738 38 H 0.249 0.751 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.162 0.838 42 H 0.152 0.848 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.108 0.892 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.108 0.892 51 H 0.088 0.912 52 H 0.153 0.847 53 H 0.165 0.835 54 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.492 -1.289 -1.873 8.791 hybrid contribution 0.284 -0.237 -0.012 0.371 sum -8.207 -1.526 -1.885 8.558 Atomic orbital electron populations 1.20921 0.88226 1.04519 1.03793 1.20085 0.98013 0.91830 0.99630 1.21397 0.92514 0.99625 0.96989 1.20762 0.94463 0.95631 1.05003 1.25107 1.05640 0.99010 0.89253 1.86554 1.38190 1.94244 1.16827 0.85181 0.76944 0.75779 0.81098 1.16170 1.20073 1.17286 1.18474 0.83635 0.90568 0.94981 1.84766 1.15107 1.96019 1.34161 1.20407 0.94920 0.92623 1.10413 1.18287 0.86886 0.84146 0.76124 1.90820 1.14750 1.87849 1.50518 1.45861 1.10966 1.04466 1.75121 1.20153 0.92435 0.79706 1.03385 1.19907 0.98831 0.97640 0.93648 1.21207 0.96147 0.95546 0.98536 1.21381 0.97314 0.96553 0.97301 1.16518 0.95941 0.93638 0.94713 1.21581 0.98444 0.97114 1.01974 1.37496 1.02392 1.03997 0.98257 0.76293 0.60623 0.58263 0.66601 1.26211 1.06401 1.05850 1.18442 1.26244 1.08311 1.15531 1.07010 1.26214 1.14825 1.06319 1.09530 1.21390 0.97354 0.96518 0.97255 1.21207 0.96065 0.95452 0.98510 1.21387 0.91156 0.99650 0.95822 0.89803 0.90187 0.89876 0.83358 0.86794 0.76551 0.73778 0.75081 0.90326 0.90771 0.83814 0.84801 0.91234 0.89268 0.91104 0.91271 0.89239 0.91326 0.91143 0.89241 0.91218 0.84710 0.83534 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.96 10.00 71.24 0.71 1.67 16 2 C -0.10 0.30 5.87 -19.90 -0.12 0.19 16 3 C -0.09 0.16 8.30 22.30 0.19 0.34 16 4 C -0.16 -0.31 5.27 -19.79 -0.10 -0.41 16 5 C -0.08 -0.07 2.38 71.24 0.17 0.10 16 6 O -0.55 -2.33 12.88 -148.98 -1.92 -4.25 16 7 Si 0.99 -2.27 25.49 68.60 1.75 -0.52 16 8 H -0.24 1.05 6.73 99.48 0.67 1.72 16 9 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 10 H -0.25 0.54 7.11 99.48 0.71 1.25 16 11 C 0.17 1.05 6.69 22.84 0.15 1.21 16 12 O -0.49 -4.60 10.91 -68.82 -0.75 -5.35 16 13 C -0.18 -0.77 5.89 -20.01 -0.12 -0.89 16 14 C 0.56 3.96 7.76 86.69 0.67 4.63 16 15 O -0.56 -8.51 15.16 16.92 0.26 -8.26 16 16 N -0.71 -0.40 5.50 -469.99 -2.58 -2.99 16 17 C 0.17 0.14 5.79 85.63 0.50 0.64 16 18 C -0.10 0.03 5.25 -19.81 -0.10 -0.07 16 19 C -0.10 -0.01 9.68 22.23 0.22 0.20 16 20 C -0.11 -0.31 9.75 22.52 0.22 -0.09 16 21 C -0.01 -0.04 5.72 -21.41 -0.12 -0.17 16 22 C -0.19 -1.42 13.24 30.01 0.40 -1.03 16 23 C -0.39 -1.38 12.15 74.32 0.90 -0.48 16 24 Si 1.20 -7.30 14.26 68.60 0.98 -6.32 16 25 C -0.46 2.47 8.65 113.37 0.98 3.45 16 26 C -0.46 2.24 8.65 113.37 0.98 3.22 16 27 C -0.46 2.49 8.65 113.37 0.98 3.47 16 28 C -0.11 -0.27 9.75 22.52 0.22 -0.05 16 29 C -0.09 0.04 9.68 22.23 0.22 0.26 16 30 C -0.06 0.12 9.18 22.52 0.21 0.33 16 31 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H 0.08 -0.75 8.08 -2.38 -0.02 -0.77 16 33 H 0.08 -0.83 8.08 -2.39 -0.02 -0.85 16 34 H 0.15 -0.84 4.86 -2.91 -0.01 -0.86 16 35 H 0.11 0.03 7.83 -2.38 -0.02 0.01 16 36 H 0.39 -1.10 8.70 -74.05 -0.64 -1.74 16 37 H 0.40 1.01 9.06 -74.06 -0.67 0.34 16 38 H 0.41 -1.81 6.49 -92.71 -0.60 -2.41 16 39 H 0.08 0.13 8.08 -2.39 -0.02 0.11 16 40 H 0.07 0.19 8.08 -2.38 -0.02 0.18 16 41 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 43 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 44 H 0.09 -0.66 7.96 -2.39 -0.02 -0.67 16 45 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 46 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 47 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 48 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 49 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 50 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 51 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 52 H 0.13 0.06 8.06 -2.91 -0.02 0.04 16 53 H 0.15 -0.59 8.06 -2.91 -0.02 -0.61 16 54 H 0.15 -1.20 6.40 -2.91 -0.02 -1.22 16 Total: 0.00 -25.42 461.17 4.62 -20.79 By element: Atomic # 1 Polarization: -9.39 SS G_CDS: -0.25 Total: -9.64 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 7.14 Total: 16.53 kcal Atomic # 7 Polarization: -0.40 SS G_CDS: -2.58 Total: -2.99 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -2.41 Total: -17.85 kcal Atomic # 14 Polarization: -9.57 SS G_CDS: 2.73 Total: -6.84 kcal Total: -25.42 4.62 -20.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13422088.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.971 kcal (2) G-P(sol) polarization free energy of solvation -25.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds