Wall clock time and date at job start Sun Mar 7 2021 03:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86293 * 109.47086 * 2 1 4 4 C 1.86303 * 109.47100 * 239.99772 * 2 1 3 5 5 C 1.89996 * 109.46791 * 119.99828 * 2 1 3 6 6 C 3.07402 * 109.46898 * 119.99872 * 2 1 3 7 7 C 4.50596 * 109.46896 * 119.99912 * 2 1 3 8 8 C 1.39536 * 120.14292 * 164.31483 * 7 6 5 9 9 C 1.37968 * 119.85924 * 180.02562 * 8 7 6 10 10 C 1.38342 * 120.14239 * 0.02992 * 9 8 7 11 11 C 1.50697 * 119.86032 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47276 * 89.99784 * 11 10 9 13 13 C 1.34784 * 119.99971 * 180.02562 * 12 11 10 14 14 O 1.21650 * 119.99709 * 359.72688 * 13 12 11 15 15 C 1.47041 * 119.99639 * 179.97438 * 13 12 11 16 16 C 1.36223 * 123.49040 * 179.70846 * 15 13 12 17 17 Cl 1.73606 * 124.60581 * 359.95998 * 16 15 13 18 18 S 1.70445 * 110.79134 * 179.86005 * 16 15 13 19 19 C 1.75492 * 92.46365 * 0.34327 * 18 16 15 20 20 C 1.50706 * 124.68451 * 179.78203 * 19 18 16 21 21 O 1.42898 * 109.46868 * 245.02363 * 20 19 18 22 22 Si 1.86296 * 109.47121 * 5.02418 * 20 19 18 23 23 H 1.48506 * 109.46834 * 60.00054 * 22 20 19 24 24 H 1.48499 * 109.47172 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47091 * 300.00149 * 22 20 19 26 26 C 1.32695 * 110.63218 * 359.80597 * 19 18 16 27 27 C 1.38352 * 120.28683 * 0.24457 * 10 9 8 28 28 C 1.37969 * 120.13564 * 359.45368 * 27 10 9 29 29 H 1.09000 * 109.47451 * 300.00386 * 1 2 3 30 30 H 1.09004 * 109.47077 * 59.99963 * 1 2 3 31 31 H 1.09001 * 109.47618 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47324 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47451 * 299.99481 * 3 2 1 34 34 H 1.09000 * 109.47451 * 60.00285 * 3 2 1 35 35 H 1.09003 * 109.47002 * 300.00262 * 4 2 1 36 36 H 1.09004 * 109.46939 * 60.00180 * 4 2 1 37 37 H 1.08999 * 109.46882 * 179.97438 * 4 2 1 38 38 H 1.08008 * 120.06938 * 0.02562 * 8 7 6 39 39 H 1.08004 * 119.93429 * 179.97438 * 9 8 7 40 40 H 1.09004 * 109.47205 * 329.99759 * 11 10 9 41 41 H 1.09005 * 109.47240 * 209.99968 * 11 10 9 42 42 H 0.96999 * 119.99984 * 0.02562 * 12 11 10 43 43 H 1.09001 * 109.47043 * 125.02446 * 20 19 18 44 44 H 0.96705 * 113.99727 * 179.97438 * 21 20 19 45 45 H 1.07992 * 123.44975 * 179.97438 * 26 19 18 46 46 H 1.07992 * 119.92863 * 179.70305 * 27 10 9 47 47 H 1.08004 * 120.07103 * 180.24433 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4962 -0.8956 1.5514 6 6 2.8876 -1.4491 2.5100 7 6 3.3648 -2.1241 3.6792 8 6 4.7007 -2.0012 4.0630 9 6 5.1544 -2.6546 5.1902 10 6 4.2882 -3.4308 5.9392 11 6 4.7907 -4.1422 7.1691 12 7 4.6314 -3.2713 8.3363 13 6 5.0163 -3.7003 9.5547 14 8 5.4914 -4.8125 9.6858 15 6 4.8569 -2.8260 10.7261 16 6 5.2158 -3.1886 11.9892 17 17 5.9096 -4.7220 12.4151 18 16 4.8938 -1.9314 13.0942 19 6 4.2501 -0.8894 11.8374 20 6 3.7164 0.5013 12.0663 21 8 2.3179 0.5289 11.7739 22 14 3.9888 0.9861 13.8443 23 1 5.4421 0.9574 14.1481 24 1 3.4635 2.3567 14.0697 25 1 3.2785 0.0310 14.7322 26 6 4.2976 -1.4953 10.6578 27 6 2.9638 -3.5614 5.5610 28 6 2.4962 -2.9081 4.4393 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.5740 1.7564 0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2703 0.8900 35 1 2.1206 -1.9060 -1.5211 36 1 2.1207 -0.3644 -2.4111 37 1 3.5740 -0.8779 -1.5213 38 1 5.3781 -1.3959 3.4788 39 1 6.1883 -2.5607 5.4882 40 1 5.8447 -4.3889 7.0410 41 1 4.2188 -5.0580 7.3183 42 1 4.2489 -2.3860 8.2323 43 1 4.2378 1.2024 11.4145 44 1 1.9068 1.3950 11.9000 45 1 3.9532 -1.0406 9.7408 46 1 2.2938 -4.1726 6.1472 47 1 1.4611 -3.0076 4.1472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_13431040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:59:34 Heat of formation + Delta-G solvation = -17.063083 kcal Electronic energy + Delta-G solvation = -28587.392008 eV Core-core repulsion = 24398.012316 eV Total energy + Delta-G solvation = -4189.379693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 407.069 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.10484 -40.27910 -38.82434 -37.89820 -37.06664 -36.23564 -34.25825 -32.07515 -31.95050 -31.40059 -29.64463 -28.48196 -28.47581 -27.87359 -26.87899 -25.11509 -23.74168 -22.78553 -22.04700 -20.67485 -19.49309 -19.29425 -18.67847 -18.16535 -16.92493 -16.76776 -16.69062 -16.36316 -16.01197 -15.90988 -15.68248 -15.19314 -14.89480 -14.62709 -14.53442 -14.47711 -14.37818 -14.29966 -14.24305 -14.11731 -14.05555 -13.94210 -13.49930 -13.37404 -13.36760 -13.15877 -13.06167 -12.62059 -12.61050 -12.42161 -12.35301 -12.33513 -12.15200 -12.05123 -12.04863 -11.92180 -11.59677 -10.99003 -10.78334 -10.73958 -10.58798 -10.14642 -10.03115 -9.85166 -9.64264 -9.45740 -0.56921 -0.25536 -0.19953 0.32911 0.42880 0.72266 0.90537 1.10282 1.26771 1.30461 1.36415 1.52025 1.58987 1.72763 2.10934 2.31424 2.32475 2.33555 2.49783 3.06429 3.10171 3.49476 3.54052 3.78983 3.85864 3.89813 3.91588 3.93399 4.15015 4.30700 4.31845 4.39350 4.63763 4.64988 4.65075 4.68105 4.69094 4.69598 4.69926 4.71697 4.72025 4.87828 4.93861 4.97586 5.22663 5.35248 5.38749 5.43131 5.47071 5.48412 5.48936 5.83126 6.34543 6.46217 6.69971 7.22141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.144 2.856 3 C -0.452 4.452 4 C -0.453 4.453 5 C -0.389 4.389 6 C -0.144 4.144 7 C 0.013 3.987 8 C -0.099 4.099 9 C -0.097 4.097 10 C -0.104 4.104 11 C 0.163 3.837 12 N -0.721 5.721 13 C 0.577 3.423 14 O -0.517 6.517 15 C -0.158 4.158 16 C -0.112 4.112 17 Cl 0.028 6.972 18 S 0.228 5.772 19 C -0.190 4.190 20 C -0.039 4.039 21 O -0.540 6.540 22 Si 0.879 3.121 23 H -0.229 1.229 24 H -0.223 1.223 25 H -0.226 1.226 26 C -0.068 4.068 27 C -0.097 4.097 28 C -0.098 4.098 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.402 0.598 43 H 0.091 0.909 44 H 0.385 0.615 45 H 0.158 0.842 46 H 0.131 0.869 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 7.073 -1.972 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.329 2.671 3 C -0.560 4.560 4 C -0.561 4.561 5 C -0.424 4.424 6 C -0.144 4.144 7 C 0.013 3.987 8 C -0.117 4.117 9 C -0.116 4.116 10 C -0.104 4.104 11 C 0.040 3.960 12 N -0.374 5.374 13 C 0.362 3.638 14 O -0.394 6.394 15 C -0.177 4.177 16 C -0.259 4.259 17 Cl 0.057 6.943 18 S 0.493 5.507 19 C -0.307 4.307 20 C -0.152 4.152 21 O -0.347 6.347 22 Si 0.697 3.303 23 H -0.152 1.152 24 H -0.145 1.145 25 H -0.149 1.149 26 C -0.097 4.097 27 C -0.115 4.115 28 C -0.116 4.116 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.237 0.763 43 H 0.109 0.891 44 H 0.234 0.766 45 H 0.175 0.825 46 H 0.149 0.851 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.074 5.800 0.575 5.926 hybrid contribution -0.390 0.324 -1.680 1.755 sum -1.464 6.124 -1.105 6.393 Atomic orbital electron populations 1.26118 1.20004 1.04968 1.04948 0.77004 0.66007 0.64666 0.59392 1.26117 1.06692 1.18268 1.04945 1.26123 1.06706 1.08457 1.14774 1.36078 1.00554 1.01163 1.04564 1.20980 0.99493 0.98720 0.95180 1.16251 0.93523 0.97056 0.91888 1.21248 0.94358 0.99315 0.96758 1.21047 0.99918 0.96117 0.94507 1.19956 0.94176 0.99261 0.97047 1.20222 1.02082 0.92579 0.81134 1.45870 1.65065 1.19828 1.06588 1.17366 0.78236 0.86050 0.82108 1.90886 1.43575 1.19724 1.85193 1.20179 1.08168 0.96206 0.93118 1.25369 1.05769 0.96312 0.98465 1.98440 1.81011 1.22824 1.92045 1.83396 1.57280 1.01979 1.08043 1.23531 1.09809 1.00683 0.96698 1.23945 0.85546 0.93808 1.11909 1.86517 1.19377 1.37223 1.91609 0.86456 0.83739 0.84200 0.75868 1.15164 1.14546 1.14867 1.20977 0.98250 0.91705 0.98798 1.21058 0.94989 0.99000 0.96490 1.21254 0.99700 0.96114 0.94576 0.90907 0.90384 0.90903 0.90917 0.90378 0.90913 0.90897 0.90387 0.90912 0.85322 0.85119 0.90071 0.90072 0.76307 0.89139 0.76647 0.82458 0.85099 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.02 8.65 101.05 0.87 1.90 16 2 Si 1.14 -3.21 14.26 -169.99 -2.42 -5.63 16 3 C -0.45 1.05 8.65 101.05 0.87 1.92 16 4 C -0.45 0.97 8.65 101.05 0.87 1.85 16 5 C -0.39 -0.57 12.14 29.55 0.36 -0.21 16 6 C -0.14 -0.46 13.24 -38.84 -0.51 -0.97 16 7 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 8 C -0.10 -0.10 9.75 -39.20 -0.38 -0.49 16 9 C -0.10 0.01 9.68 -39.64 -0.38 -0.38 16 10 C -0.10 0.01 5.25 -104.54 -0.55 -0.54 16 11 C 0.16 0.04 5.79 -5.20 -0.03 0.01 16 12 N -0.72 -0.32 5.53 -62.68 -0.35 -0.66 16 13 C 0.58 1.91 7.79 -12.69 -0.10 1.81 16 14 O -0.52 -3.38 14.91 5.23 0.08 -3.31 16 15 C -0.16 -0.37 5.98 -104.59 -0.63 -1.00 16 16 C -0.11 -0.32 6.87 30.01 0.21 -0.12 16 17 Cl 0.03 0.11 27.20 -51.86 -1.41 -1.30 16 18 S 0.23 0.20 20.19 -107.50 -2.17 -1.97 16 19 C -0.19 -0.01 5.68 -36.19 -0.21 -0.22 16 20 C -0.04 0.08 2.93 36.01 0.11 0.19 16 21 O -0.54 0.93 12.86 -35.23 -0.45 0.48 16 22 Si 0.88 -1.67 26.20 -169.99 -4.45 -6.12 16 23 H -0.23 0.31 7.11 56.52 0.40 0.71 16 24 H -0.22 0.52 7.11 56.52 0.40 0.92 16 25 H -0.23 0.11 7.11 56.52 0.40 0.51 16 26 C -0.07 -0.01 9.75 -39.00 -0.38 -0.39 16 27 C -0.10 -0.01 9.68 -39.64 -0.38 -0.39 16 28 C -0.10 -0.11 9.75 -39.20 -0.38 -0.50 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 30 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.08 -0.22 7.96 -51.93 -0.41 -0.64 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.13 -0.01 8.06 -52.48 -0.42 -0.43 16 39 H 0.13 -0.21 8.06 -52.48 -0.42 -0.63 16 40 H 0.08 0.05 8.08 -51.93 -0.42 -0.37 16 41 H 0.08 0.06 8.08 -51.93 -0.42 -0.36 16 42 H 0.40 -0.62 7.01 -40.82 -0.29 -0.91 16 43 H 0.09 -0.39 7.96 -51.93 -0.41 -0.81 16 44 H 0.39 -2.36 8.74 45.56 0.40 -1.96 16 45 H 0.16 -0.35 7.10 -52.49 -0.37 -0.72 16 46 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 47 H 0.13 0.02 8.06 -52.48 -0.42 -0.41 16 LS Contribution 439.32 15.07 6.62 6.62 Total: 0.00 -8.73 439.32 -11.54 -20.27 By element: Atomic # 1 Polarization: -4.55 SS G_CDS: -5.72 Total: -10.27 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.26 Total: 1.90 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: -0.35 Total: -0.66 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -0.37 Total: -2.83 kcal Atomic # 14 Polarization: -4.88 SS G_CDS: -6.88 Total: -11.76 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -2.17 Total: -1.97 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.41 Total: -1.30 kcal Total LS contribution 6.62 Total: 6.62 kcal Total: -8.73 -11.54 -20.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13431040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.207 kcal (2) G-P(sol) polarization free energy of solvation -8.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds