Wall clock time and date at job start Sun Mar 7 2021 03:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86293 * 109.47086 * 2 1 4 4 C 1.86303 * 109.47100 * 239.99772 * 2 1 3 5 5 C 1.89996 * 109.46791 * 119.99828 * 2 1 3 6 6 C 3.07402 * 109.46898 * 119.99872 * 2 1 3 7 7 C 4.50596 * 109.46896 * 119.99912 * 2 1 3 8 8 C 1.39536 * 120.14292 * 164.31483 * 7 6 5 9 9 C 1.37968 * 119.85924 * 180.02562 * 8 7 6 10 10 C 1.38342 * 120.14239 * 0.02992 * 9 8 7 11 11 C 1.50697 * 119.86032 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47276 * 89.99784 * 11 10 9 13 13 C 1.34784 * 119.99971 * 180.02562 * 12 11 10 14 14 O 1.21650 * 119.99709 * 359.72688 * 13 12 11 15 15 C 1.47041 * 119.99639 * 179.97438 * 13 12 11 16 16 C 1.36223 * 123.49040 * 179.70846 * 15 13 12 17 17 Cl 1.73606 * 124.60581 * 359.95998 * 16 15 13 18 18 S 1.70445 * 110.79134 * 179.86005 * 16 15 13 19 19 C 1.75492 * 92.46365 * 0.34327 * 18 16 15 20 20 C 1.50706 * 124.68451 * 179.78203 * 19 18 16 21 21 O 1.42898 * 109.46868 * 245.02363 * 20 19 18 22 22 Si 1.86296 * 109.47121 * 5.02418 * 20 19 18 23 23 H 1.48506 * 109.46834 * 60.00054 * 22 20 19 24 24 H 1.48499 * 109.47172 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47091 * 300.00149 * 22 20 19 26 26 C 1.32695 * 110.63218 * 359.80597 * 19 18 16 27 27 C 1.38352 * 120.28683 * 0.24457 * 10 9 8 28 28 C 1.37969 * 120.13564 * 359.45368 * 27 10 9 29 29 H 1.09000 * 109.47451 * 300.00386 * 1 2 3 30 30 H 1.09004 * 109.47077 * 59.99963 * 1 2 3 31 31 H 1.09001 * 109.47618 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47324 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47451 * 299.99481 * 3 2 1 34 34 H 1.09000 * 109.47451 * 60.00285 * 3 2 1 35 35 H 1.09003 * 109.47002 * 300.00262 * 4 2 1 36 36 H 1.09004 * 109.46939 * 60.00180 * 4 2 1 37 37 H 1.08999 * 109.46882 * 179.97438 * 4 2 1 38 38 H 1.08008 * 120.06938 * 0.02562 * 8 7 6 39 39 H 1.08004 * 119.93429 * 179.97438 * 9 8 7 40 40 H 1.09004 * 109.47205 * 329.99759 * 11 10 9 41 41 H 1.09005 * 109.47240 * 209.99968 * 11 10 9 42 42 H 0.96999 * 119.99984 * 0.02562 * 12 11 10 43 43 H 1.09001 * 109.47043 * 125.02446 * 20 19 18 44 44 H 0.96705 * 113.99727 * 179.97438 * 21 20 19 45 45 H 1.07992 * 123.44975 * 179.97438 * 26 19 18 46 46 H 1.07992 * 119.92863 * 179.70305 * 27 10 9 47 47 H 1.08004 * 120.07103 * 180.24433 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4962 -0.8956 1.5514 6 6 2.8876 -1.4491 2.5100 7 6 3.3648 -2.1241 3.6792 8 6 4.7007 -2.0012 4.0630 9 6 5.1544 -2.6546 5.1902 10 6 4.2882 -3.4308 5.9392 11 6 4.7907 -4.1422 7.1691 12 7 4.6314 -3.2713 8.3363 13 6 5.0163 -3.7003 9.5547 14 8 5.4914 -4.8125 9.6858 15 6 4.8569 -2.8260 10.7261 16 6 5.2158 -3.1886 11.9892 17 17 5.9096 -4.7220 12.4151 18 16 4.8938 -1.9314 13.0942 19 6 4.2501 -0.8894 11.8374 20 6 3.7164 0.5013 12.0663 21 8 2.3179 0.5289 11.7739 22 14 3.9888 0.9861 13.8443 23 1 5.4421 0.9574 14.1481 24 1 3.4635 2.3567 14.0697 25 1 3.2785 0.0310 14.7322 26 6 4.2976 -1.4953 10.6578 27 6 2.9638 -3.5614 5.5610 28 6 2.4962 -2.9081 4.4393 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.5740 1.7564 0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2703 0.8900 35 1 2.1206 -1.9060 -1.5211 36 1 2.1207 -0.3644 -2.4111 37 1 3.5740 -0.8779 -1.5213 38 1 5.3781 -1.3959 3.4788 39 1 6.1883 -2.5607 5.4882 40 1 5.8447 -4.3889 7.0410 41 1 4.2188 -5.0580 7.3183 42 1 4.2489 -2.3860 8.2323 43 1 4.2378 1.2024 11.4145 44 1 1.9068 1.3950 11.9000 45 1 3.9532 -1.0406 9.7408 46 1 2.2938 -4.1726 6.1472 47 1 1.4611 -3.0076 4.1472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13431040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:59:32 Heat of formation + Delta-G solvation = -10.213757 kcal Electronic energy + Delta-G solvation = -28587.094999 eV Core-core repulsion = 24398.012316 eV Total energy + Delta-G solvation = -4189.082684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 407.069 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.25033 -40.34258 -38.81107 -38.02310 -37.05580 -36.38112 -34.36049 -32.09341 -31.98518 -31.46026 -29.45081 -28.27824 -28.27351 -27.96185 -26.82229 -25.19595 -23.75792 -22.83445 -22.09872 -20.77041 -19.52712 -19.35270 -18.50048 -18.23083 -17.07078 -16.85166 -16.67301 -16.32793 -16.05320 -15.98591 -15.64620 -15.24309 -14.84113 -14.67934 -14.55255 -14.50494 -14.38276 -14.29106 -14.13863 -14.09688 -13.87893 -13.82472 -13.64506 -13.15722 -13.15291 -13.01710 -12.97738 -12.62771 -12.60005 -12.48557 -12.36955 -12.26159 -12.20655 -12.08140 -11.98711 -11.97194 -11.60120 -11.05750 -10.78440 -10.63157 -10.42850 -10.29080 -10.05863 -9.90659 -9.71721 -9.51763 -0.68788 -0.31630 -0.26355 0.30681 0.40326 0.68651 0.96398 1.06785 1.39490 1.40024 1.44503 1.57059 1.71684 1.88499 2.10447 2.13139 2.40489 2.45954 2.48625 2.99996 3.22639 3.49694 3.64208 3.77553 3.82625 3.83989 3.92211 3.93892 4.27759 4.30863 4.33768 4.45719 4.60597 4.64103 4.75586 4.83506 4.84387 4.84762 4.87666 4.90322 4.90594 4.93317 4.93504 4.98069 5.19553 5.24465 5.39732 5.44968 5.59428 5.68853 5.69448 5.81272 6.37744 6.58467 6.79081 7.06196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.203 2.797 3 C -0.461 4.461 4 C -0.464 4.464 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.099 4.099 11 C 0.167 3.833 12 N -0.705 5.705 13 C 0.574 3.426 14 O -0.556 6.556 15 C -0.164 4.164 16 C -0.134 4.134 17 Cl 0.007 6.993 18 S 0.231 5.769 19 C -0.189 4.189 20 C -0.032 4.032 21 O -0.556 6.556 22 Si 0.890 3.110 23 H -0.239 1.239 24 H -0.211 1.211 25 H -0.253 1.253 26 C -0.066 4.066 27 C -0.095 4.095 28 C -0.108 4.108 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.147 0.853 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.413 0.587 43 H 0.123 0.877 44 H 0.405 0.595 45 H 0.184 0.816 46 H 0.145 0.855 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 9.033 -2.981 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.385 2.615 3 C -0.569 4.569 4 C -0.571 4.571 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.100 4.100 11 C 0.044 3.956 12 N -0.358 5.358 13 C 0.360 3.640 14 O -0.436 6.436 15 C -0.184 4.184 16 C -0.281 4.281 17 Cl 0.036 6.964 18 S 0.496 5.504 19 C -0.306 4.306 20 C -0.145 4.145 21 O -0.367 6.367 22 Si 0.711 3.289 23 H -0.162 1.162 24 H -0.132 1.132 25 H -0.177 1.177 26 C -0.095 4.095 27 C -0.113 4.113 28 C -0.126 4.126 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.165 0.835 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.251 0.749 43 H 0.140 0.860 44 H 0.256 0.744 45 H 0.201 0.799 46 H 0.162 0.838 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.785 7.800 -0.423 8.013 hybrid contribution -0.222 -0.224 -1.376 1.412 sum -2.007 7.577 -1.800 8.042 Atomic orbital electron populations 1.26226 1.20496 1.04880 1.05379 0.76243 0.64898 0.63378 0.57009 1.26213 1.06608 1.18685 1.05379 1.26249 1.06583 1.08485 1.15791 1.37480 0.99387 1.00379 1.04924 1.21583 1.01023 1.00124 0.96361 1.16515 0.94350 0.97726 0.92247 1.21384 0.94127 0.99758 0.97286 1.21211 1.00650 0.95435 0.93915 1.19903 0.94135 0.99137 0.96785 1.20176 1.01943 0.92451 0.81055 1.45765 1.63949 1.20231 1.05840 1.17571 0.77835 0.85677 0.82943 1.90864 1.45550 1.21366 1.85816 1.20336 1.08341 0.97122 0.92555 1.25568 1.06878 0.96164 0.99450 1.98422 1.81475 1.24277 1.92213 1.83391 1.57086 1.01617 1.08299 1.23879 1.09158 1.01477 0.96114 1.23923 0.85924 0.92773 1.11915 1.86469 1.19398 1.39201 1.91583 0.86304 0.82658 0.84101 0.75840 1.16234 1.13239 1.17680 1.21156 0.97892 0.90565 0.99872 1.21208 0.95295 0.98682 0.96161 1.21375 0.99954 0.96350 0.94940 0.91147 0.89292 0.91274 0.91188 0.89283 0.91150 0.91353 0.89279 0.91261 0.84756 0.83541 0.90244 0.90454 0.74947 0.85998 0.74382 0.79923 0.83766 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.39 8.65 113.37 0.98 3.37 16 2 Si 1.20 -7.29 14.26 68.60 0.98 -6.32 16 3 C -0.46 2.49 8.65 113.37 0.98 3.48 16 4 C -0.46 2.22 8.65 113.37 0.98 3.20 16 5 C -0.39 -1.40 12.14 74.32 0.90 -0.50 16 6 C -0.19 -1.44 13.24 30.01 0.40 -1.05 16 7 C -0.01 -0.05 5.72 -21.41 -0.12 -0.17 16 8 C -0.11 -0.28 9.75 22.52 0.22 -0.06 16 9 C -0.09 0.03 9.68 22.23 0.22 0.25 16 10 C -0.10 0.04 5.25 -19.81 -0.10 -0.06 16 11 C 0.17 0.09 5.79 85.63 0.50 0.58 16 12 N -0.71 -0.42 5.53 -470.46 -2.60 -3.02 16 13 C 0.57 4.10 7.79 86.55 0.67 4.77 16 14 O -0.56 -8.06 14.91 -4.19 -0.06 -8.12 16 15 C -0.16 -0.82 5.98 -19.84 -0.12 -0.94 16 16 C -0.13 -0.91 6.87 67.35 0.46 -0.44 16 17 Cl 0.01 0.07 27.20 -2.72 -0.07 0.00 16 18 S 0.23 0.53 20.19 -56.49 -1.14 -0.61 16 19 C -0.19 0.16 5.68 24.52 0.14 0.30 16 20 C -0.03 0.19 2.93 71.24 0.21 0.40 16 21 O -0.56 3.02 12.86 -148.98 -1.92 1.10 16 22 Si 0.89 -3.98 26.20 68.60 1.80 -2.18 16 23 H -0.24 0.68 7.11 99.48 0.71 1.39 16 24 H -0.21 1.32 7.11 99.48 0.71 2.03 16 25 H -0.25 0.04 7.11 99.48 0.71 0.75 16 26 C -0.07 0.06 9.75 22.70 0.22 0.28 16 27 C -0.10 -0.01 9.68 22.23 0.22 0.20 16 28 C -0.11 -0.33 9.75 22.52 0.22 -0.11 16 29 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 30 H 0.09 -0.64 7.96 -2.38 -0.02 -0.66 16 31 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 32 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 33 H 0.09 -0.66 7.96 -2.38 -0.02 -0.68 16 34 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 35 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 36 H 0.09 -0.61 7.96 -2.38 -0.02 -0.63 16 37 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 38 H 0.13 0.08 8.06 -2.91 -0.02 0.05 16 39 H 0.15 -0.57 8.06 -2.91 -0.02 -0.60 16 40 H 0.08 0.11 8.08 -2.38 -0.02 0.09 16 41 H 0.08 0.14 8.08 -2.38 -0.02 0.12 16 42 H 0.41 -1.72 7.01 -92.71 -0.65 -2.37 16 43 H 0.12 -1.44 7.96 -2.39 -0.02 -1.46 16 44 H 0.40 -5.84 8.74 -74.05 -0.65 -6.49 16 45 H 0.18 -1.22 7.10 -2.91 -0.02 -1.24 16 46 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 47 H 0.13 0.16 8.06 -2.91 -0.02 0.14 16 Total: 0.00 -21.93 439.32 4.43 -17.50 By element: Atomic # 1 Polarization: -12.33 SS G_CDS: 0.48 Total: -11.85 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.97 Total: 13.51 kcal Atomic # 7 Polarization: -0.42 SS G_CDS: -2.60 Total: -3.02 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -1.98 Total: -7.02 kcal Atomic # 14 Polarization: -11.27 SS G_CDS: 2.78 Total: -8.50 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -1.14 Total: -0.61 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -0.07 Total: 0.00 kcal Total: -21.93 4.43 -17.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13431040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.282 kcal (2) G-P(sol) polarization free energy of solvation -21.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds