Wall clock time and date at job start Sun Mar 7 2021 03:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85260 * 179.69770 * 8 7 6 10 10 C 1.38344 * 120.14274 * 0.57747 * 9 8 7 11 11 C 1.50696 * 119.85912 * 179.70020 * 10 9 8 12 12 N 1.46499 * 109.46983 * 270.02300 * 11 10 9 13 13 C 1.34775 * 119.99992 * 179.97438 * 12 11 10 14 14 O 1.21611 * 120.00513 * 359.97438 * 13 12 11 15 15 C 1.47388 * 119.99924 * 180.02562 * 13 12 11 16 16 C 1.36410 * 127.19090 * 359.67977 * 15 13 12 17 17 O 1.33657 * 108.39434 * 179.89881 * 16 15 13 18 18 C 1.34213 * 110.90754 * 0.38795 * 17 16 15 19 19 C 1.50704 * 125.43462 * 179.76768 * 18 17 16 20 20 O 1.42904 * 109.46746 * 244.99278 * 19 18 17 21 21 Si 1.86295 * 109.47297 * 4.99374 * 19 18 17 22 22 H 1.48501 * 109.46908 * 60.00356 * 21 19 18 23 23 H 1.48501 * 109.46847 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47431 * 300.00347 * 21 19 18 25 25 C 1.34175 * 109.12481 * 359.76057 * 18 17 16 26 26 C 1.38343 * 120.28621 * 359.71918 * 10 9 8 27 27 C 1.37976 * 120.14217 * 359.97438 * 26 10 9 28 28 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 30 30 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 33 33 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 34 34 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 35 35 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 36 36 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 37 37 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 38 38 H 1.07996 * 119.92784 * 180.30119 * 9 8 7 39 39 H 1.09001 * 109.47458 * 30.01914 * 11 10 9 40 40 H 1.08999 * 109.47593 * 150.02082 * 11 10 9 41 41 H 0.97000 * 120.00064 * 359.97438 * 12 11 10 42 42 H 1.07996 * 125.80394 * 0.02562 * 16 15 13 43 43 H 1.09003 * 109.47427 * 125.00007 * 19 18 17 44 44 H 0.96701 * 113.99963 * 179.97438 * 20 19 18 45 45 H 1.08009 * 127.02240 * 180.02562 * 25 18 17 46 46 H 1.07999 * 119.93194 * 179.97438 * 26 10 9 47 47 H 1.08003 * 120.07184 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5743 -3.9385 4.6858 10 6 4.2888 -3.4292 5.9400 11 6 4.7913 -4.1395 7.1704 12 7 3.7950 -5.1197 7.6094 13 6 4.0303 -5.8784 8.6982 14 8 5.0699 -5.7497 9.3160 15 6 3.0283 -6.8650 9.1395 16 6 1.8194 -7.1264 8.5641 17 8 1.2170 -8.0901 9.2675 18 6 1.9805 -8.4770 10.3013 19 6 1.6161 -9.5380 11.3077 20 8 1.4725 -8.9411 12.5981 21 14 0.0089 -10.3388 10.8115 22 1 0.1583 -10.9591 9.4705 23 1 -0.3503 -11.3838 11.8035 24 1 -1.0625 -9.3116 10.7652 25 6 3.1199 -7.7686 10.2956 26 6 3.5437 -2.2708 6.0695 27 6 3.0808 -1.6155 4.9469 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5739 1.7566 0.0005 32 1 2.1205 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9058 -1.5212 35 1 2.1207 -0.3643 -2.4111 36 1 3.5740 -0.8777 -1.5214 37 1 4.3313 -3.6977 2.5772 38 1 5.1565 -4.8432 4.5914 39 1 5.7260 -4.6502 6.9389 40 1 4.9613 -3.4133 7.9653 41 1 2.9660 -5.2228 7.1164 42 1 1.4182 -6.6391 7.6878 43 1 2.4026 -10.2920 11.3417 44 1 1.2374 -9.5668 13.2969 45 1 3.9377 -7.8465 10.9970 46 1 3.3239 -1.8784 7.0514 47 1 2.4989 -0.7115 5.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_13456056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:59:46 Heat of formation + Delta-G solvation = -28.190264 kcal Electronic energy + Delta-G solvation = -26460.050945 eV Core-core repulsion = 22505.917855 eV Total energy + Delta-G solvation = -3954.133090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.68918 -40.86711 -39.96369 -37.99161 -36.27907 -34.42413 -33.84665 -32.19123 -32.10795 -31.22416 -29.65419 -28.49231 -28.48753 -27.68759 -26.50908 -24.56997 -23.77484 -22.80068 -22.16514 -20.86833 -19.52340 -19.12226 -18.75397 -17.48397 -17.16434 -17.08541 -16.72358 -16.37053 -16.08525 -15.98710 -15.82947 -15.62423 -14.72650 -14.69514 -14.55915 -14.46678 -14.31023 -14.16717 -14.07880 -14.06965 -13.95936 -13.67878 -13.65475 -13.38459 -13.38002 -13.16937 -12.77301 -12.63291 -12.37355 -12.24143 -12.17526 -12.07232 -12.06304 -11.61845 -11.11816 -10.93592 -10.82968 -10.75515 -10.56903 -10.17464 -10.06281 -9.75627 -9.49160 -0.27109 0.25351 0.29510 0.89202 0.99027 1.28512 1.34678 1.47862 1.49275 1.57270 1.69295 1.88264 2.03370 2.31179 2.31741 2.38527 2.42586 3.04183 3.24975 3.49475 3.53729 3.61662 3.75736 3.83443 3.90152 3.90320 4.18224 4.27222 4.28571 4.39514 4.60531 4.62416 4.63868 4.64079 4.66005 4.68145 4.68512 4.68782 4.70713 4.81695 4.85561 4.94318 5.18970 5.25159 5.31571 5.37762 5.40113 5.43573 5.47317 5.47878 5.79770 5.88337 6.39443 6.43303 6.67658 7.20701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.143 2.857 3 C -0.453 4.453 4 C -0.452 4.452 5 C -0.388 4.388 6 C -0.145 4.145 7 C 0.014 3.986 8 C -0.099 4.099 9 C -0.097 4.097 10 C -0.105 4.105 11 C 0.162 3.838 12 N -0.725 5.725 13 C 0.589 3.411 14 O -0.530 6.530 15 C -0.237 4.237 16 C 0.033 3.967 17 O -0.170 6.170 18 C -0.015 4.015 19 C -0.044 4.044 20 O -0.542 6.542 21 Si 0.955 3.045 22 H -0.246 1.246 23 H -0.247 1.247 24 H -0.245 1.245 25 C -0.118 4.118 26 C -0.097 4.097 27 C -0.099 4.099 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.400 0.600 42 H 0.214 0.786 43 H 0.098 0.902 44 H 0.389 0.611 45 H 0.164 0.836 46 H 0.131 0.869 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -0.912 -3.516 5.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.328 2.672 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.423 4.423 6 C -0.145 4.145 7 C 0.013 3.987 8 C -0.117 4.117 9 C -0.116 4.116 10 C -0.105 4.105 11 C 0.040 3.960 12 N -0.378 5.378 13 C 0.377 3.623 14 O -0.407 6.407 15 C -0.241 4.241 16 C -0.037 4.037 17 O -0.066 6.066 18 C -0.063 4.063 19 C -0.154 4.154 20 O -0.349 6.349 21 Si 0.774 3.226 22 H -0.170 1.170 23 H -0.170 1.170 24 H -0.168 1.168 25 C -0.137 4.137 26 C -0.116 4.116 27 C -0.117 4.117 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.234 0.766 42 H 0.231 0.769 43 H 0.115 0.885 44 H 0.238 0.762 45 H 0.181 0.819 46 H 0.149 0.851 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.583 -0.864 -3.563 5.127 hybrid contribution 0.224 -0.231 0.403 0.515 sum -3.360 -1.094 -3.160 4.740 Atomic orbital electron populations 1.26118 1.19982 1.04957 1.04963 0.77023 0.66018 0.64720 0.59394 1.26118 1.06731 1.18237 1.04961 1.26115 1.06719 1.08423 1.14774 1.36086 1.00241 1.01218 1.04713 1.20975 0.99658 0.98722 0.95112 1.16259 0.98212 0.94513 0.89674 1.21258 0.96955 0.94240 0.99222 1.21055 0.99303 0.99848 0.91383 1.19953 0.99766 0.96406 0.94405 1.20223 0.91457 0.90819 0.93545 1.45886 1.22384 1.39749 1.29741 1.17242 0.85632 0.79647 0.79791 1.90826 1.26592 1.68269 1.54975 1.21485 0.97081 1.04266 1.01296 1.24441 0.92252 0.89817 0.97196 1.83653 1.44108 1.44609 1.34272 1.21157 0.91404 1.02284 0.91417 1.23834 1.12284 0.95011 0.84243 1.86485 1.93455 1.38657 1.16335 0.85550 0.76013 0.79604 0.81392 1.16954 1.17038 1.16790 1.22485 0.98796 0.95061 0.97406 1.21061 0.96863 0.94759 0.98903 1.21260 0.99470 0.99948 0.90984 0.90906 0.90364 0.90915 0.90889 0.90363 0.90906 0.90911 0.90362 0.90890 0.85283 0.85091 0.90042 0.90049 0.76607 0.76930 0.88463 0.76205 0.81873 0.85083 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.04 8.65 101.05 0.87 1.91 16 2 Si 1.14 -3.22 14.26 -169.99 -2.42 -5.65 16 3 C -0.45 0.99 8.65 101.05 0.87 1.87 16 4 C -0.45 1.04 8.65 101.05 0.87 1.91 16 5 C -0.39 -0.55 12.14 29.55 0.36 -0.19 16 6 C -0.14 -0.44 13.24 -38.83 -0.51 -0.96 16 7 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 8 C -0.10 -0.08 9.75 -39.19 -0.38 -0.47 16 9 C -0.10 0.03 9.68 -39.64 -0.38 -0.35 16 10 C -0.10 0.04 5.25 -104.55 -0.55 -0.51 16 11 C 0.16 0.00 5.79 -5.20 -0.03 -0.03 16 12 N -0.73 0.06 5.54 -62.58 -0.35 -0.28 16 13 C 0.59 1.88 7.81 -12.54 -0.10 1.78 16 14 O -0.53 -3.85 16.98 5.27 0.09 -3.76 16 15 C -0.24 -0.51 6.31 -103.27 -0.65 -1.16 16 16 C 0.03 -0.01 11.61 30.07 0.35 0.33 16 17 O -0.17 -0.23 8.90 7.64 0.07 -0.16 16 18 C -0.01 -0.03 6.22 -35.74 -0.22 -0.25 16 19 C -0.04 0.03 2.96 36.01 0.11 0.14 16 20 O -0.54 0.13 12.86 -35.23 -0.45 -0.32 16 21 Si 0.95 -0.91 27.38 -169.99 -4.65 -5.57 16 22 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 23 H -0.25 0.37 7.11 56.52 0.40 0.77 16 24 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 25 C -0.12 -0.34 10.90 -37.46 -0.41 -0.75 16 26 C -0.10 0.02 9.68 -39.64 -0.38 -0.36 16 27 C -0.10 -0.09 9.75 -39.19 -0.38 -0.47 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 36 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 37 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 38 H 0.13 -0.24 8.06 -52.49 -0.42 -0.66 16 39 H 0.08 0.04 8.08 -51.93 -0.42 -0.38 16 40 H 0.08 0.05 8.08 -51.93 -0.42 -0.37 16 41 H 0.40 -1.07 7.43 -40.82 -0.30 -1.37 16 42 H 0.21 -1.07 7.47 -52.49 -0.39 -1.46 16 43 H 0.10 -0.30 7.96 -51.93 -0.41 -0.72 16 44 H 0.39 -2.00 8.74 45.56 0.40 -1.60 16 45 H 0.16 0.45 8.06 -52.48 -0.42 0.03 16 46 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 47 H 0.13 -0.02 8.06 -52.48 -0.42 -0.44 16 LS Contribution 419.76 15.07 6.33 6.33 Total: 0.00 -10.82 419.76 -8.76 -19.58 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: -6.18 Total: -12.03 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.18 Total: 1.87 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: -0.35 Total: -0.28 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.30 Total: -4.25 kcal Atomic # 14 Polarization: -4.14 SS G_CDS: -7.08 Total: -11.21 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -10.82 -8.76 -19.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13456056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.613 kcal (2) G-P(sol) polarization free energy of solvation -10.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds