Wall clock time and date at job start Sun Mar 7 2021 03:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85260 * 179.69770 * 8 7 6 10 10 C 1.38344 * 120.14274 * 0.57747 * 9 8 7 11 11 C 1.50696 * 119.85912 * 179.70020 * 10 9 8 12 12 N 1.46499 * 109.46983 * 270.02300 * 11 10 9 13 13 C 1.34775 * 119.99992 * 179.97438 * 12 11 10 14 14 O 1.21611 * 120.00513 * 359.97438 * 13 12 11 15 15 C 1.47388 * 119.99924 * 180.02562 * 13 12 11 16 16 C 1.36410 * 127.19090 * 359.67977 * 15 13 12 17 17 O 1.33657 * 108.39434 * 179.89881 * 16 15 13 18 18 C 1.34213 * 110.90754 * 0.38795 * 17 16 15 19 19 C 1.50704 * 125.43462 * 179.76768 * 18 17 16 20 20 O 1.42904 * 109.46746 * 244.99278 * 19 18 17 21 21 Si 1.86295 * 109.47297 * 4.99374 * 19 18 17 22 22 H 1.48501 * 109.46908 * 60.00356 * 21 19 18 23 23 H 1.48501 * 109.46847 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47431 * 300.00347 * 21 19 18 25 25 C 1.34175 * 109.12481 * 359.76057 * 18 17 16 26 26 C 1.38343 * 120.28621 * 359.71918 * 10 9 8 27 27 C 1.37976 * 120.14217 * 359.97438 * 26 10 9 28 28 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 30 30 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 33 33 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 34 34 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 35 35 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 36 36 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 37 37 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 38 38 H 1.07996 * 119.92784 * 180.30119 * 9 8 7 39 39 H 1.09001 * 109.47458 * 30.01914 * 11 10 9 40 40 H 1.08999 * 109.47593 * 150.02082 * 11 10 9 41 41 H 0.97000 * 120.00064 * 359.97438 * 12 11 10 42 42 H 1.07996 * 125.80394 * 0.02562 * 16 15 13 43 43 H 1.09003 * 109.47427 * 125.00007 * 19 18 17 44 44 H 0.96701 * 113.99963 * 179.97438 * 20 19 18 45 45 H 1.08009 * 127.02240 * 180.02562 * 25 18 17 46 46 H 1.07999 * 119.93194 * 179.97438 * 26 10 9 47 47 H 1.08003 * 120.07184 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5743 -3.9385 4.6858 10 6 4.2888 -3.4292 5.9400 11 6 4.7913 -4.1395 7.1704 12 7 3.7950 -5.1197 7.6094 13 6 4.0303 -5.8784 8.6982 14 8 5.0699 -5.7497 9.3160 15 6 3.0283 -6.8650 9.1395 16 6 1.8194 -7.1264 8.5641 17 8 1.2170 -8.0901 9.2675 18 6 1.9805 -8.4770 10.3013 19 6 1.6161 -9.5380 11.3077 20 8 1.4725 -8.9411 12.5981 21 14 0.0089 -10.3388 10.8115 22 1 0.1583 -10.9591 9.4705 23 1 -0.3503 -11.3838 11.8035 24 1 -1.0625 -9.3116 10.7652 25 6 3.1199 -7.7686 10.2956 26 6 3.5437 -2.2708 6.0695 27 6 3.0808 -1.6155 4.9469 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5739 1.7566 0.0005 32 1 2.1205 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9058 -1.5212 35 1 2.1207 -0.3643 -2.4111 36 1 3.5740 -0.8777 -1.5214 37 1 4.3313 -3.6977 2.5772 38 1 5.1565 -4.8432 4.5914 39 1 5.7260 -4.6502 6.9389 40 1 4.9613 -3.4133 7.9653 41 1 2.9660 -5.2228 7.1164 42 1 1.4182 -6.6391 7.6878 43 1 2.4026 -10.2920 11.3417 44 1 1.2374 -9.5668 13.2969 45 1 3.9377 -7.8465 10.9970 46 1 3.3239 -1.8784 7.0514 47 1 2.4989 -0.7115 5.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13456056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:59:45 Heat of formation + Delta-G solvation = -24.718463 kcal Electronic energy + Delta-G solvation = -26459.900396 eV Core-core repulsion = 22505.917855 eV Total energy + Delta-G solvation = -3953.982541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.135 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.76060 -40.96584 -40.10515 -37.91367 -36.42140 -34.54634 -33.93769 -32.24181 -32.11142 -31.27348 -29.46226 -28.29049 -28.28775 -27.74474 -26.48886 -24.66953 -23.77612 -22.84608 -22.27673 -20.98470 -19.54636 -19.12541 -18.69036 -17.56125 -17.24328 -17.21859 -16.77223 -16.38162 -16.05147 -15.96768 -15.83177 -15.78026 -14.81027 -14.65450 -14.54593 -14.46229 -14.20420 -14.15772 -14.11862 -13.90116 -13.84019 -13.77473 -13.71879 -13.16986 -13.16570 -12.99019 -12.74622 -12.62305 -12.39099 -12.22396 -12.16724 -12.04975 -12.00224 -11.61931 -11.36474 -10.98956 -10.80615 -10.64708 -10.49024 -10.29451 -10.07582 -9.79662 -9.54071 -0.31364 0.20389 0.28794 0.78769 1.05560 1.35871 1.37726 1.53655 1.54194 1.69977 1.72844 1.94379 2.03501 2.20596 2.38763 2.41691 2.47225 2.97838 3.35390 3.47524 3.50325 3.68896 3.75656 3.82380 3.90446 3.92467 4.25491 4.26482 4.30368 4.40538 4.51116 4.58582 4.62942 4.81486 4.83173 4.83504 4.85496 4.86332 4.89192 4.89277 4.92000 4.96396 5.11704 5.18003 5.21279 5.38018 5.42945 5.58212 5.67746 5.68035 5.79292 5.81549 6.38276 6.56611 6.74004 7.06021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.202 2.798 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.099 4.099 11 C 0.165 3.835 12 N -0.707 5.707 13 C 0.590 3.410 14 O -0.581 6.581 15 C -0.266 4.266 16 C 0.060 3.940 17 O -0.177 6.177 18 C -0.022 4.022 19 C -0.048 4.048 20 O -0.562 6.562 21 Si 0.995 3.005 22 H -0.260 1.260 23 H -0.235 1.235 24 H -0.277 1.277 25 C -0.144 4.144 26 C -0.095 4.095 27 C -0.108 4.108 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.414 0.586 42 H 0.259 0.741 43 H 0.122 0.878 44 H 0.408 0.592 45 H 0.153 0.847 46 H 0.146 0.854 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 -1.159 -4.419 6.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.383 2.617 3 C -0.571 4.571 4 C -0.570 4.570 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.100 4.100 11 C 0.043 3.957 12 N -0.360 5.360 13 C 0.379 3.621 14 O -0.462 6.462 15 C -0.270 4.270 16 C -0.010 4.010 17 O -0.073 6.073 18 C -0.070 4.070 19 C -0.157 4.157 20 O -0.373 6.373 21 Si 0.816 3.184 22 H -0.184 1.184 23 H -0.157 1.157 24 H -0.202 1.202 25 C -0.164 4.164 26 C -0.113 4.113 27 C -0.126 4.126 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.251 0.749 42 H 0.275 0.725 43 H 0.139 0.861 44 H 0.261 0.739 45 H 0.171 0.829 46 H 0.164 0.836 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.657 -1.138 -4.449 6.540 hybrid contribution 0.518 -0.112 0.640 0.830 sum -4.139 -1.250 -3.809 5.762 Atomic orbital electron populations 1.26219 1.20402 1.04921 1.05369 0.76273 0.64963 0.63297 0.57160 1.26240 1.06545 1.18921 1.05360 1.26220 1.06580 1.08550 1.15607 1.37475 0.99225 1.00428 1.05076 1.21588 1.01078 1.00127 0.96310 1.16526 0.99027 0.95257 0.90036 1.21388 0.97103 0.94146 0.99934 1.21216 0.98875 1.00146 0.90958 1.19886 0.99651 0.96304 0.94113 1.20173 0.91400 0.90649 0.93505 1.45735 1.22834 1.38688 1.28709 1.17414 0.85089 0.79720 0.79869 1.90794 1.28644 1.69961 1.56780 1.21482 0.98271 1.05085 1.02208 1.25240 0.90813 0.88022 0.96954 1.83693 1.44233 1.44989 1.34362 1.21584 0.91072 1.02501 0.91822 1.24035 1.13445 0.94500 0.83689 1.86435 1.93655 1.40202 1.17057 0.85010 0.74292 0.78379 0.80705 1.18439 1.15740 1.20225 1.22573 0.99305 0.96379 0.98174 1.21213 0.96318 0.94548 0.99207 1.21384 0.99896 1.00375 0.90965 0.91206 0.89268 0.91185 0.91322 0.89257 0.91232 0.91138 0.89273 0.91248 0.84780 0.83520 0.90341 0.90493 0.74867 0.72522 0.86088 0.73911 0.82920 0.83648 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.39 8.65 113.37 0.98 3.37 16 2 Si 1.20 -7.13 14.26 68.60 0.98 -6.15 16 3 C -0.46 2.21 8.65 113.37 0.98 3.19 16 4 C -0.46 2.36 8.65 113.37 0.98 3.34 16 5 C -0.39 -1.42 12.14 74.32 0.90 -0.52 16 6 C -0.19 -1.43 13.24 30.02 0.40 -1.03 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.17 16 8 C -0.11 -0.25 9.75 22.52 0.22 -0.03 16 9 C -0.09 0.08 9.68 22.23 0.22 0.29 16 10 C -0.10 0.10 5.25 -19.82 -0.10 -0.01 16 11 C 0.17 0.03 5.79 85.63 0.50 0.53 16 12 N -0.71 0.26 5.54 -470.15 -2.60 -2.34 16 13 C 0.59 4.28 7.81 86.65 0.68 4.96 16 14 O -0.58 -9.61 16.98 -4.07 -0.07 -9.68 16 15 C -0.27 -1.29 6.31 -18.99 -0.12 -1.41 16 16 C 0.06 -0.11 11.61 67.39 0.78 0.67 16 17 O -0.18 -0.42 8.90 4.44 0.04 -0.38 16 18 C -0.02 -0.09 6.22 24.76 0.15 0.06 16 19 C -0.05 0.07 2.96 71.24 0.21 0.29 16 20 O -0.56 0.26 12.86 -148.98 -1.92 -1.65 16 21 Si 0.99 -2.26 27.38 68.60 1.88 -0.38 16 22 H -0.26 0.05 7.11 99.48 0.71 0.76 16 23 H -0.23 1.04 7.11 99.48 0.71 1.75 16 24 H -0.28 -0.80 7.11 99.48 0.71 -0.10 16 25 C -0.14 -1.04 10.90 23.65 0.26 -0.78 16 26 C -0.09 0.05 9.68 22.23 0.22 0.27 16 27 C -0.11 -0.27 9.75 22.52 0.22 -0.05 16 28 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 29 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 30 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 31 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 32 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 35 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 36 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 37 H 0.13 0.06 8.06 -2.91 -0.02 0.03 16 38 H 0.15 -0.63 8.06 -2.91 -0.02 -0.66 16 39 H 0.08 0.11 8.08 -2.39 -0.02 0.09 16 40 H 0.08 0.13 8.08 -2.39 -0.02 0.11 16 41 H 0.41 -2.72 7.43 -92.71 -0.69 -3.41 16 42 H 0.26 -3.27 7.47 -2.91 -0.02 -3.29 16 43 H 0.12 -0.83 7.96 -2.39 -0.02 -0.84 16 44 H 0.41 -4.39 8.74 -74.06 -0.65 -5.04 16 45 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 46 H 0.15 -0.55 8.06 -2.91 -0.02 -0.58 16 47 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 Total: 0.00 -27.33 419.76 6.07 -21.26 By element: Atomic # 1 Polarization: -14.05 SS G_CDS: 0.42 Total: -13.63 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 7.34 Total: 12.97 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -2.60 Total: -2.34 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.94 Total: -11.72 kcal Atomic # 14 Polarization: -9.39 SS G_CDS: 2.86 Total: -6.54 kcal Total: -27.33 6.07 -21.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13456056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.458 kcal (2) G-P(sol) polarization free energy of solvation -27.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds