Wall clock time and date at job start Sun Mar 7 2021 03:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37873 * 126.45833 * 2 1 4 4 C 1.46681 * 126.23113 * 359.97438 * 3 2 1 5 5 O 1.21694 * 120.00025 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99898 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99884 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47450 * 180.02562 * 7 6 4 9 9 C 1.38346 * 119.85790 * 269.72887 * 8 7 6 10 10 C 1.37973 * 120.14374 * 179.75766 * 9 8 7 11 11 C 1.39535 * 119.85268 * 0.51333 * 10 9 8 12 12 C 1.43206 * 120.13944 * 179.72331 * 11 10 9 13 13 C 9.66602 * 150.54212 * 180.02562 * 3 1 2 14 14 Si 9.37333 * 173.97650 * 359.92704 * 6 1 2 15 15 C 1.86298 * 109.47247 * 354.31880 * 14 13 12 16 16 C 1.86301 * 109.47082 * 114.32117 * 14 13 12 17 17 C 1.86302 * 109.46868 * 234.31923 * 14 13 12 18 18 C 1.39532 * 119.71861 * 359.74093 * 11 10 9 19 19 C 1.37974 * 119.85812 * 0.02562 * 18 11 10 20 20 N 1.37645 * 107.53664 * 179.97438 * 3 2 1 21 21 C 1.35532 * 108.64316 * 0.02562 * 20 3 2 22 22 C 1.50702 * 125.56743 * 179.97438 * 21 20 3 23 23 O 1.42899 * 109.47019 * 120.02166 * 22 21 20 24 24 Si 1.86303 * 109.46764 * 0.02562 * 22 21 20 25 25 H 1.48504 * 109.47292 * 59.99968 * 24 22 21 26 26 H 1.48501 * 109.46972 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47145 * 299.99810 * 24 22 21 28 28 C 1.35456 * 108.87181 * 359.74305 * 21 20 3 29 29 H 1.09002 * 109.47152 * 89.99880 * 1 2 3 30 30 H 1.09001 * 109.46980 * 329.99981 * 1 2 3 31 31 H 1.09004 * 109.47113 * 209.99962 * 1 2 3 32 32 H 0.96998 * 120.00173 * 0.02562 * 6 4 3 33 33 H 1.09001 * 109.47705 * 300.00498 * 7 6 4 34 34 H 1.09002 * 109.47155 * 60.00243 * 7 6 4 35 35 H 1.08007 * 119.92856 * 359.97438 * 9 8 7 36 36 H 1.07997 * 120.07290 * 180.23305 * 10 9 8 37 37 H 1.09005 * 109.46735 * 59.99919 * 15 14 13 38 38 H 1.08999 * 109.47366 * 179.97438 * 15 14 13 39 39 H 1.09003 * 109.47390 * 300.00232 * 15 14 13 40 40 H 1.08997 * 109.47253 * 59.99795 * 16 14 13 41 41 H 1.09001 * 109.46753 * 180.02562 * 16 14 13 42 42 H 1.08997 * 109.46763 * 300.00073 * 16 14 13 43 43 H 1.08998 * 109.47267 * 60.00605 * 17 14 13 44 44 H 1.09001 * 109.46998 * 179.97438 * 17 14 13 45 45 H 1.08997 * 109.47174 * 300.00026 * 17 14 13 46 46 H 1.08001 * 120.07187 * 179.97438 * 18 11 10 47 47 H 1.08001 * 119.93126 * 179.97438 * 19 18 11 48 48 H 0.96997 * 125.68157 * 179.97438 * 20 3 2 49 49 H 1.08998 * 109.47277 * 240.02754 * 22 21 20 50 50 H 0.96701 * 114.00488 * 299.99944 * 23 22 21 51 51 H 1.08006 * 126.06816 * 180.27918 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5093 -0.0005 5 8 0.7027 2.7766 -0.0015 6 7 2.8037 3.4999 0.0001 7 6 2.3678 4.8985 -0.0010 8 6 3.5747 5.8009 -0.0007 9 6 4.1221 6.2186 1.1992 10 6 5.2301 7.0408 1.2064 11 6 5.7920 7.4597 -0.0001 12 6 6.9385 8.3178 0.0002 13 6 7.8783 9.0214 0.0021 14 14 9.3993 10.1601 0.0014 15 6 10.9439 9.1331 0.1751 16 6 9.4624 11.1110 -1.5994 17 6 9.2828 11.3527 1.4280 18 6 5.2320 7.0391 -1.2069 19 6 4.1269 6.2130 -1.2004 20 7 3.6284 0.6626 0.0006 21 6 3.6218 -0.6927 0.0004 22 6 4.8434 -1.5753 0.0003 23 8 4.8347 -2.4008 1.1667 24 14 6.3753 -0.5150 0.0013 25 1 6.3836 0.3417 1.2143 26 1 7.5791 -1.3846 0.0019 27 1 6.3844 0.3428 -1.2107 28 6 2.3380 -1.1246 0.0054 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 3.7500 3.2869 0.0005 33 1 1.7700 5.0922 -0.8917 34 1 1.7682 5.0929 0.8882 35 1 3.6833 5.8975 2.1325 36 1 5.6587 7.3631 2.1438 37 1 11.0120 8.4353 -0.6596 38 1 11.8165 9.7863 0.1742 39 1 10.9070 8.5767 1.1117 40 1 8.5587 11.7118 -1.7010 41 1 10.3353 11.7639 -1.5999 42 1 9.5305 10.4132 -2.4340 43 1 9.2459 10.7963 2.3646 44 1 10.1556 12.0056 1.4278 45 1 8.3791 11.9535 1.3264 46 1 5.6620 7.3602 -2.1441 47 1 3.6921 5.8871 -2.1338 48 1 4.4191 1.2244 0.0004 49 1 4.8373 -2.2041 -0.8900 50 1 4.8395 -1.9071 1.9981 51 1 2.0136 -2.1549 0.0108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_13940406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:59:56 Heat of formation + Delta-G solvation = -1.606628 kcal Electronic energy + Delta-G solvation = -28929.996831 eV Core-core repulsion = 24919.197537 eV Total energy + Delta-G solvation = -4010.799294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.163 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.67428 -40.86526 -40.01405 -37.72088 -36.52297 -34.55217 -33.66269 -32.15642 -32.06797 -31.05384 -29.48024 -28.42979 -28.30713 -28.30680 -27.89339 -26.21324 -23.82153 -23.21670 -22.44643 -21.63210 -20.51855 -19.88631 -19.58048 -17.96741 -17.31222 -17.00739 -16.92687 -16.56734 -16.27113 -16.03527 -15.97001 -15.52201 -15.09882 -14.85770 -14.56862 -14.53316 -14.41935 -14.23710 -14.14110 -13.97823 -13.90925 -13.85457 -13.71432 -13.59930 -13.45141 -13.18721 -13.18501 -13.00852 -12.99488 -12.67808 -12.60658 -12.42841 -12.28531 -12.24386 -12.07330 -12.02668 -11.64911 -11.24057 -10.82360 -10.66758 -10.54629 -10.39711 -10.12346 -9.84720 -9.57919 -9.22011 -0.35564 0.22553 0.24370 0.98998 1.30286 1.32981 1.35130 1.50624 1.56753 1.67869 1.74530 1.90900 2.02935 2.20519 2.36512 2.38921 2.45270 2.94339 3.40650 3.42983 3.67550 3.71566 3.73890 3.79443 3.86457 4.12170 4.21946 4.23193 4.25362 4.54682 4.55164 4.56913 4.71201 4.77728 4.81498 4.81551 4.84114 4.84450 4.87440 4.87503 4.88214 4.90171 4.91826 5.07321 5.14001 5.16073 5.33673 5.35567 5.38339 5.56489 5.60832 5.66058 5.66229 5.75018 5.82947 6.18846 6.35561 6.53652 6.63200 6.97594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.087 4.087 3 C -0.066 4.066 4 C 0.590 3.410 5 O -0.556 6.556 6 N -0.718 5.718 7 C 0.166 3.834 8 C -0.102 4.102 9 C -0.095 4.095 10 C -0.108 4.108 11 C -0.007 4.007 12 C -0.193 4.193 13 C -0.389 4.389 14 Si 1.204 2.796 15 C -0.462 4.462 16 C -0.463 4.463 17 C -0.463 4.463 18 C -0.108 4.108 19 C -0.095 4.095 20 N -0.531 5.531 21 C 0.026 3.974 22 C -0.050 4.050 23 O -0.543 6.543 24 Si 0.955 3.045 25 H -0.245 1.245 26 H -0.255 1.255 27 H -0.248 1.248 28 C -0.184 4.184 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.405 0.595 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.134 0.866 47 H 0.146 0.854 48 H 0.420 0.580 49 H 0.141 0.859 50 H 0.391 0.609 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 1.915 0.142 7.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.179 4.179 4 C 0.379 3.621 5 O -0.435 6.435 6 N -0.369 5.369 7 C 0.044 3.956 8 C -0.103 4.103 9 C -0.113 4.113 10 C -0.126 4.126 11 C -0.007 4.007 12 C -0.193 4.193 13 C -0.420 4.420 14 Si 1.385 2.615 15 C -0.569 4.569 16 C -0.570 4.570 17 C -0.570 4.570 18 C -0.126 4.126 19 C -0.114 4.114 20 N -0.132 5.132 21 C -0.091 4.091 22 C -0.162 4.162 23 O -0.349 6.349 24 Si 0.776 3.224 25 H -0.168 1.168 26 H -0.179 1.179 27 H -0.171 1.171 28 C -0.208 4.208 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.241 0.759 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.152 0.848 47 H 0.164 0.836 48 H 0.260 0.740 49 H 0.159 0.841 50 H 0.240 0.760 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.743 2.217 -0.287 7.104 hybrid contribution -0.086 0.167 0.334 0.383 sum 6.658 2.384 0.047 7.072 Atomic orbital electron populations 1.20332 0.89147 1.02840 1.02318 1.20258 0.96359 0.91359 1.01571 1.20048 0.84150 0.93049 1.20629 1.17136 0.85521 0.83480 0.75992 1.90832 1.17310 1.83647 1.51714 1.45852 1.09688 1.05733 1.75661 1.20198 0.93538 0.78025 1.03846 1.19933 0.97242 0.99475 0.93612 1.21228 0.95012 0.96524 0.98575 1.21394 0.96274 0.97686 0.97276 1.16524 0.92795 0.96715 0.94714 1.21578 0.96563 0.99078 1.02036 1.37498 1.04681 1.01604 0.98199 0.76235 0.57446 0.61377 0.66393 1.26224 1.15923 1.09982 1.04804 1.26234 1.05311 1.09065 1.16431 1.26235 1.05378 1.11410 1.14024 1.21392 0.96318 0.97651 0.97278 1.21227 0.95032 0.96520 0.98587 1.41976 1.06872 1.06675 1.57676 1.21191 0.98265 0.82529 1.07082 1.24614 0.99851 0.98547 0.93169 1.86547 1.96708 1.35700 1.15980 0.85612 0.76725 0.78482 0.81595 1.16780 1.17857 1.17126 1.20774 0.90856 0.99189 1.10023 0.91400 0.91792 0.90523 0.75950 0.90105 0.90064 0.83565 0.84771 0.91226 0.89261 0.91210 0.91294 0.89267 0.91188 0.91191 0.89270 0.91309 0.84793 0.83599 0.73981 0.84118 0.76004 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 9.83 71.24 0.70 0.18 16 2 C -0.09 -0.51 6.21 -19.56 -0.12 -0.64 16 3 C -0.07 -0.29 7.06 40.35 0.28 -0.01 16 4 C 0.59 3.54 7.79 86.45 0.67 4.22 16 5 O -0.56 -7.25 14.80 -4.33 -0.06 -7.31 16 6 N -0.72 0.25 5.54 -470.82 -2.61 -2.36 16 7 C 0.17 -0.09 5.79 85.63 0.50 0.41 16 8 C -0.10 0.12 5.25 -19.81 -0.10 0.02 16 9 C -0.10 0.08 9.68 22.23 0.22 0.30 16 10 C -0.11 -0.24 9.75 22.52 0.22 -0.02 16 11 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 12 C -0.19 -1.37 13.24 30.02 0.40 -0.98 16 13 C -0.39 -1.26 12.14 74.32 0.90 -0.36 16 14 Si 1.20 -7.60 14.26 68.60 0.98 -6.63 16 15 C -0.46 2.54 8.65 113.37 0.98 3.52 16 16 C -0.46 2.43 8.65 113.37 0.98 3.41 16 17 C -0.46 2.41 8.65 113.37 0.98 3.39 16 18 C -0.11 -0.25 9.75 22.52 0.22 -0.03 16 19 C -0.10 0.07 9.68 22.23 0.22 0.29 16 20 N -0.53 0.68 5.47 -171.93 -0.94 -0.26 16 21 C 0.03 -0.02 6.12 41.34 0.25 0.23 16 22 C -0.05 0.23 2.99 71.24 0.21 0.44 16 23 O -0.54 1.45 12.87 -148.98 -1.92 -0.47 16 24 Si 0.95 -5.61 26.24 68.60 1.80 -3.81 16 25 H -0.24 1.55 7.11 99.48 0.71 2.26 16 26 H -0.26 0.55 7.11 99.48 0.71 1.25 16 27 H -0.25 1.36 7.11 99.48 0.71 2.07 16 28 C -0.18 -0.51 10.64 22.01 0.23 -0.28 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.60 6.49 -2.39 -0.02 0.59 16 31 H 0.08 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.41 -1.98 7.59 -92.71 -0.70 -2.69 16 33 H 0.08 0.03 8.08 -2.39 -0.02 0.01 16 34 H 0.08 0.03 8.08 -2.39 -0.02 0.01 16 35 H 0.15 -0.63 8.06 -2.91 -0.02 -0.66 16 36 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 37 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 38 H 0.09 -0.67 7.96 -2.39 -0.02 -0.68 16 39 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 40 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 41 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 42 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 43 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 44 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 45 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 46 H 0.13 0.06 8.06 -2.91 -0.02 0.03 16 47 H 0.15 -0.61 8.06 -2.91 -0.02 -0.63 16 48 H 0.42 -2.65 5.98 -92.71 -0.55 -3.20 16 49 H 0.14 -0.91 7.96 -2.39 -0.02 -0.93 16 50 H 0.39 -3.41 8.70 -74.06 -0.64 -4.05 16 51 H 0.15 0.16 8.06 -2.91 -0.02 0.14 16 Total: 0.00 -20.74 439.23 4.68 -16.06 By element: Atomic # 1 Polarization: -8.98 SS G_CDS: -0.18 Total: -9.16 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 7.62 Total: 13.94 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -3.55 Total: -2.62 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -1.98 Total: -7.79 kcal Atomic # 14 Polarization: -13.21 SS G_CDS: 2.78 Total: -10.43 kcal Total: -20.74 4.68 -16.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_13940406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.452 kcal (2) G-P(sol) polarization free energy of solvation -20.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds