Wall clock time and date at job start Sun Mar 7 2021 04:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86297 * 109.46901 * 2 1 4 4 C 1.86301 * 109.46979 * 240.00228 * 2 1 3 5 5 C 1.89997 * 109.47256 * 120.00356 * 2 1 3 6 6 C 3.07397 * 109.47219 * 120.00250 * 2 1 3 7 7 C 4.50595 * 109.47225 * 120.00223 * 2 1 3 8 8 C 1.39535 * 120.14508 * 46.43205 * 7 6 5 9 9 C 1.37972 * 119.85992 * 180.02562 * 8 7 6 10 10 C 1.38349 * 120.14107 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.85513 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46823 * 90.00306 * 11 10 9 13 13 C 1.34781 * 119.99383 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00218 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99617 * 179.97438 * 13 12 11 16 16 C 1.50699 * 109.47057 * 180.02562 * 15 13 12 17 17 C 1.34850 * 125.88843 * 274.68944 * 16 15 13 18 18 C 1.40894 * 107.41649 * 180.26479 * 17 16 15 19 19 C 1.34846 * 107.41755 * 359.97438 * 18 17 16 20 20 C 1.50700 * 125.89251 * 179.97438 * 19 18 17 21 21 O 1.42898 * 109.47119 * 120.04201 * 20 19 18 22 22 Si 1.86305 * 109.46918 * 0.04537 * 20 19 18 23 23 H 1.48495 * 109.47009 * 60.00052 * 22 20 19 24 24 H 1.48502 * 109.46791 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46738 * 299.99790 * 22 20 19 26 26 N 1.36342 * 108.22051 * 0.02562 * 19 18 17 27 27 C 1.38344 * 120.28584 * 0.25016 * 10 9 8 28 28 C 1.37975 * 120.14108 * 359.45304 * 27 10 9 29 29 H 1.08994 * 109.47249 * 299.99755 * 1 2 3 30 30 H 1.08997 * 109.46753 * 60.00211 * 1 2 3 31 31 H 1.08999 * 109.46809 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46846 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47676 * 299.99807 * 3 2 1 34 34 H 1.09001 * 109.47403 * 60.00573 * 3 2 1 35 35 H 1.09004 * 109.47175 * 299.99610 * 4 2 1 36 36 H 1.09003 * 109.47552 * 59.99751 * 4 2 1 37 37 H 1.09000 * 109.47126 * 179.97438 * 4 2 1 38 38 H 1.07997 * 120.06749 * 0.02562 * 8 7 6 39 39 H 1.07992 * 119.92899 * 180.02562 * 9 8 7 40 40 H 1.08988 * 109.47064 * 330.00122 * 11 10 9 41 41 H 1.09001 * 109.46920 * 209.99436 * 11 10 9 42 42 H 0.96994 * 120.00399 * 359.97438 * 12 11 10 43 43 H 1.09000 * 109.47301 * 59.99397 * 15 13 12 44 44 H 1.09005 * 109.47068 * 299.99654 * 15 13 12 45 45 H 1.08004 * 126.29283 * 0.24505 * 17 16 15 46 46 H 1.07995 * 126.28812 * 180.02562 * 18 17 16 47 47 H 1.08996 * 109.47200 * 240.04788 * 20 19 18 48 48 H 0.96700 * 114.00124 * 300.00169 * 21 20 19 49 49 H 0.97000 * 125.63938 * 179.97438 * 26 19 18 50 50 H 1.08000 * 119.92951 * 179.70014 * 27 10 9 51 51 H 1.08002 * 120.07349 * 180.24274 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4964 -0.8957 1.5512 6 6 2.8878 -1.4492 2.5098 7 6 3.3651 -2.1243 3.6790 8 6 3.3318 -3.5176 3.7463 9 6 3.7928 -4.1619 4.8759 10 6 4.2868 -3.4295 5.9406 11 6 4.7881 -4.1399 7.1715 12 7 6.2169 -4.4268 7.0218 13 6 6.8836 -5.0612 8.0066 14 8 6.3007 -5.3940 9.0168 15 6 8.3533 -5.3568 7.8524 16 6 8.8546 -6.0671 9.0834 17 6 9.2764 -5.4767 10.2200 18 6 9.6618 -6.4999 11.1087 19 6 9.4603 -7.6764 10.4814 20 6 9.7360 -9.0423 11.0555 21 8 8.5241 -9.7986 11.0885 22 14 10.4050 -8.8654 12.7853 23 1 9.4070 -8.1645 13.6326 24 1 10.6761 -10.2113 13.3511 25 1 11.6645 -8.0794 12.7509 26 7 8.9651 -7.4172 9.2379 27 6 4.3173 -2.0477 5.8825 28 6 3.8650 -1.3915 4.7562 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5740 1.7564 -0.0005 33 1 2.1207 2.2703 -0.8899 34 1 2.1207 2.2703 0.8900 35 1 2.1207 -1.9059 -1.5212 36 1 2.1207 -0.3644 -2.4112 37 1 3.5740 -0.8778 -1.5214 38 1 2.9460 -4.0904 2.9160 39 1 3.7679 -5.2403 4.9291 40 1 4.2414 -5.0740 7.2998 41 1 4.6344 -3.5060 8.0448 42 1 6.6831 -4.1603 6.2141 43 1 8.9002 -4.4228 7.7232 44 1 8.5066 -5.9914 6.9795 45 1 9.3125 -4.4148 10.4135 46 1 10.0470 -6.3663 12.1087 47 1 10.4685 -9.5567 10.4335 48 1 7.8257 -9.3992 11.6251 49 1 8.7304 -8.0833 8.5728 50 1 4.6996 -1.4815 6.7189 51 1 3.8929 -0.3128 4.7104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_14644196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:00:11 Heat of formation + Delta-G solvation = -8.352894 kcal Electronic energy + Delta-G solvation = -28071.913562 eV Core-core repulsion = 24060.821728 eV Total energy + Delta-G solvation = -4011.091834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.163 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.26679 -40.88594 -40.04159 -37.65566 -36.28290 -34.33639 -33.18652 -32.11892 -31.84562 -31.47225 -29.67285 -29.44298 -28.49884 -28.49395 -27.18481 -25.00702 -23.78659 -22.97493 -21.86756 -21.28362 -20.96235 -19.53356 -18.98041 -18.30654 -17.45692 -16.86864 -16.69654 -16.38035 -16.15561 -16.13554 -15.99984 -15.44755 -14.93745 -14.77380 -14.59094 -14.46131 -14.32461 -14.24304 -14.23876 -14.11177 -14.07287 -13.99870 -13.93696 -13.80806 -13.39606 -13.38624 -13.33497 -13.17613 -12.78035 -12.64900 -12.37476 -12.19040 -12.17781 -12.07855 -11.97601 -11.71834 -11.62683 -11.04471 -10.88344 -10.76252 -10.57921 -10.16403 -10.06971 -9.69026 -9.49897 -8.87057 -0.27817 0.28404 1.10159 1.24681 1.33876 1.49373 1.56486 1.56513 1.60795 1.64228 1.94560 1.96424 2.18275 2.30493 2.30926 2.43432 2.57969 3.03930 3.48953 3.49526 3.65943 3.73989 3.82251 3.87339 3.89230 3.97982 4.02109 4.25813 4.27513 4.36979 4.49924 4.59222 4.59743 4.62628 4.63290 4.63423 4.67514 4.67899 4.68241 4.70019 4.83810 4.84439 4.92997 5.18139 5.31000 5.33972 5.36791 5.37147 5.39134 5.42394 5.46707 5.47237 5.78811 6.07255 6.21852 6.41571 6.54460 6.66828 6.69741 7.20581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.142 2.858 3 C -0.452 4.452 4 C -0.452 4.452 5 C -0.388 4.388 6 C -0.145 4.145 7 C 0.013 3.987 8 C -0.099 4.099 9 C -0.098 4.098 10 C -0.104 4.104 11 C 0.161 3.839 12 N -0.730 5.730 13 C 0.511 3.489 14 O -0.522 6.522 15 C -0.071 4.071 16 C 0.036 3.964 17 C -0.172 4.172 18 C -0.195 4.195 19 C -0.010 4.010 20 C -0.062 4.062 21 O -0.545 6.545 22 Si 0.978 3.022 23 H -0.249 1.249 24 H -0.255 1.255 25 H -0.249 1.249 26 N -0.533 5.533 27 C -0.098 4.098 28 C -0.098 4.098 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.402 0.598 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.114 0.886 48 H 0.380 0.620 49 H 0.413 0.587 50 H 0.131 0.869 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 2.507 -5.249 5.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.328 2.672 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.423 4.423 6 C -0.145 4.145 7 C 0.013 3.987 8 C -0.117 4.117 9 C -0.117 4.117 10 C -0.104 4.104 11 C 0.038 3.962 12 N -0.383 5.383 13 C 0.297 3.703 14 O -0.397 6.397 15 C -0.112 4.112 16 C -0.078 4.078 17 C -0.197 4.197 18 C -0.220 4.220 19 C -0.123 4.123 20 C -0.172 4.172 21 O -0.351 6.351 22 Si 0.798 3.202 23 H -0.173 1.173 24 H -0.179 1.179 25 H -0.172 1.172 26 N -0.128 5.128 27 C -0.116 4.116 28 C -0.116 4.116 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.237 0.763 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.132 0.868 48 H 0.228 0.772 49 H 0.250 0.750 50 H 0.149 0.851 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.848 1.764 -4.028 4.478 hybrid contribution -0.357 0.120 -0.687 0.784 sum 0.491 1.884 -4.715 5.101 Atomic orbital electron populations 1.26117 1.19969 1.04980 1.04974 0.77036 0.66058 0.64732 0.59395 1.26112 1.06697 1.18222 1.04983 1.26115 1.06697 1.08430 1.14767 1.36090 1.00148 1.01368 1.04655 1.20976 0.99719 0.98647 0.95132 1.16254 0.99174 0.92447 0.90824 1.21252 0.99057 0.92963 0.98383 1.21038 0.97892 1.00192 0.92562 1.19962 1.00859 0.93856 0.95758 1.20192 0.80971 0.99978 0.95013 1.46076 1.10177 1.60954 1.21104 1.20630 0.89116 0.77558 0.83046 1.90777 1.69425 1.50918 1.28554 1.20127 0.92746 1.02351 0.95954 1.19463 1.07987 0.82785 0.97576 1.20570 1.06864 0.99032 0.93188 1.20658 1.09212 0.91570 1.00531 1.20794 1.08049 0.96429 0.87070 1.24759 0.91596 0.88609 1.12224 1.86472 1.24102 1.49697 1.74796 0.85280 0.80750 0.80559 0.73592 1.17270 1.17936 1.17228 1.41759 1.50792 1.06500 1.13739 1.21050 0.98914 0.93655 0.97991 1.21263 0.97788 1.00217 0.92362 0.90889 0.90360 0.90905 0.90902 0.90353 0.90891 0.90908 0.90354 0.90905 0.85316 0.85209 0.90398 0.90264 0.76322 0.86441 0.88170 0.84615 0.84599 0.86780 0.77201 0.74989 0.85111 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.01 8.65 101.05 0.87 1.88 16 2 Si 1.14 -3.27 14.26 -169.99 -2.42 -5.70 16 3 C -0.45 1.07 8.65 101.05 0.87 1.94 16 4 C -0.45 1.07 8.65 101.05 0.87 1.95 16 5 C -0.39 -0.53 12.14 29.55 0.36 -0.18 16 6 C -0.14 -0.44 13.24 -38.84 -0.51 -0.95 16 7 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 8 C -0.10 -0.08 9.75 -39.20 -0.38 -0.46 16 9 C -0.10 0.04 9.68 -39.64 -0.38 -0.34 16 10 C -0.10 0.06 5.25 -104.54 -0.55 -0.49 16 11 C 0.16 -0.07 5.79 -5.19 -0.03 -0.10 16 12 N -0.73 0.94 5.55 -61.47 -0.34 0.60 16 13 C 0.51 0.50 7.82 -10.98 -0.09 0.42 16 14 O -0.52 -2.96 16.03 5.56 0.09 -2.87 16 15 C -0.07 0.11 6.24 -29.03 -0.18 -0.08 16 16 C 0.04 0.06 5.66 -81.79 -0.46 -0.40 16 17 C -0.17 -0.48 10.76 -39.78 -0.43 -0.91 16 18 C -0.19 -0.53 9.37 -39.78 -0.37 -0.90 16 19 C -0.01 -0.02 6.50 -81.79 -0.53 -0.55 16 20 C -0.06 -0.02 3.08 36.01 0.11 0.09 16 21 O -0.55 -0.68 12.88 -35.23 -0.45 -1.13 16 22 Si 0.98 0.06 25.87 -169.99 -4.40 -4.33 16 23 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 24 H -0.26 -0.29 7.11 56.52 0.40 0.11 16 25 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 26 N -0.53 -0.73 6.07 -5.44 -0.03 -0.76 16 27 C -0.10 0.04 9.68 -39.64 -0.38 -0.34 16 28 C -0.10 -0.08 9.75 -39.19 -0.38 -0.46 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 37 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 38 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 39 H 0.13 -0.25 8.06 -52.49 -0.42 -0.67 16 40 H 0.08 0.02 8.08 -51.94 -0.42 -0.40 16 41 H 0.08 0.02 8.08 -51.93 -0.42 -0.40 16 42 H 0.40 -1.42 8.46 -40.82 -0.35 -1.77 16 43 H 0.12 -0.42 8.14 -51.93 -0.42 -0.84 16 44 H 0.10 -0.38 8.14 -51.93 -0.42 -0.80 16 45 H 0.14 0.22 8.06 -52.48 -0.42 -0.20 16 46 H 0.14 0.20 6.22 -52.49 -0.33 -0.13 16 47 H 0.11 -0.09 7.96 -51.93 -0.41 -0.50 16 48 H 0.38 -0.43 8.70 45.56 0.40 -0.04 16 49 H 0.41 -0.18 8.96 -40.82 -0.37 -0.55 16 50 H 0.13 -0.25 8.06 -52.49 -0.42 -0.67 16 51 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 LS Contribution 443.11 15.07 6.68 6.68 Total: 0.00 -10.14 443.11 -10.46 -20.60 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: -7.37 Total: -12.60 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.21 Total: -0.48 kcal Atomic # 7 Polarization: 0.21 SS G_CDS: -0.37 Total: -0.17 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: -0.36 Total: -4.01 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: -6.82 Total: -10.03 kcal Total LS contribution 6.68 Total: 6.68 kcal Total: -10.14 -10.46 -20.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_14644196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.249 kcal (2) G-P(sol) polarization free energy of solvation -10.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds