Wall clock time and date at job start Sun Mar 7 2021 04:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86297 * 109.46901 * 2 1 4 4 C 1.86301 * 109.46979 * 240.00228 * 2 1 3 5 5 C 1.89997 * 109.47256 * 120.00356 * 2 1 3 6 6 C 3.07397 * 109.47219 * 120.00250 * 2 1 3 7 7 C 4.50595 * 109.47225 * 120.00223 * 2 1 3 8 8 C 1.39535 * 120.14508 * 46.43205 * 7 6 5 9 9 C 1.37972 * 119.85992 * 180.02562 * 8 7 6 10 10 C 1.38349 * 120.14107 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.85513 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46823 * 90.00306 * 11 10 9 13 13 C 1.34781 * 119.99383 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00218 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99617 * 179.97438 * 13 12 11 16 16 C 1.50699 * 109.47057 * 180.02562 * 15 13 12 17 17 C 1.34850 * 125.88843 * 274.68944 * 16 15 13 18 18 C 1.40894 * 107.41649 * 180.26479 * 17 16 15 19 19 C 1.34846 * 107.41755 * 359.97438 * 18 17 16 20 20 C 1.50700 * 125.89251 * 179.97438 * 19 18 17 21 21 O 1.42898 * 109.47119 * 120.04201 * 20 19 18 22 22 Si 1.86305 * 109.46918 * 0.04537 * 20 19 18 23 23 H 1.48495 * 109.47009 * 60.00052 * 22 20 19 24 24 H 1.48502 * 109.46791 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46738 * 299.99790 * 22 20 19 26 26 N 1.36342 * 108.22051 * 0.02562 * 19 18 17 27 27 C 1.38344 * 120.28584 * 0.25016 * 10 9 8 28 28 C 1.37975 * 120.14108 * 359.45304 * 27 10 9 29 29 H 1.08994 * 109.47249 * 299.99755 * 1 2 3 30 30 H 1.08997 * 109.46753 * 60.00211 * 1 2 3 31 31 H 1.08999 * 109.46809 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46846 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47676 * 299.99807 * 3 2 1 34 34 H 1.09001 * 109.47403 * 60.00573 * 3 2 1 35 35 H 1.09004 * 109.47175 * 299.99610 * 4 2 1 36 36 H 1.09003 * 109.47552 * 59.99751 * 4 2 1 37 37 H 1.09000 * 109.47126 * 179.97438 * 4 2 1 38 38 H 1.07997 * 120.06749 * 0.02562 * 8 7 6 39 39 H 1.07992 * 119.92899 * 180.02562 * 9 8 7 40 40 H 1.08988 * 109.47064 * 330.00122 * 11 10 9 41 41 H 1.09001 * 109.46920 * 209.99436 * 11 10 9 42 42 H 0.96994 * 120.00399 * 359.97438 * 12 11 10 43 43 H 1.09000 * 109.47301 * 59.99397 * 15 13 12 44 44 H 1.09005 * 109.47068 * 299.99654 * 15 13 12 45 45 H 1.08004 * 126.29283 * 0.24505 * 17 16 15 46 46 H 1.07995 * 126.28812 * 180.02562 * 18 17 16 47 47 H 1.08996 * 109.47200 * 240.04788 * 20 19 18 48 48 H 0.96700 * 114.00124 * 300.00169 * 21 20 19 49 49 H 0.97000 * 125.63938 * 179.97438 * 26 19 18 50 50 H 1.08000 * 119.92951 * 179.70014 * 27 10 9 51 51 H 1.08002 * 120.07349 * 180.24274 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4964 -0.8957 1.5512 6 6 2.8878 -1.4492 2.5098 7 6 3.3651 -2.1243 3.6790 8 6 3.3318 -3.5176 3.7463 9 6 3.7928 -4.1619 4.8759 10 6 4.2868 -3.4295 5.9406 11 6 4.7881 -4.1399 7.1715 12 7 6.2169 -4.4268 7.0218 13 6 6.8836 -5.0612 8.0066 14 8 6.3007 -5.3940 9.0168 15 6 8.3533 -5.3568 7.8524 16 6 8.8546 -6.0671 9.0834 17 6 9.2764 -5.4767 10.2200 18 6 9.6618 -6.4999 11.1087 19 6 9.4603 -7.6764 10.4814 20 6 9.7360 -9.0423 11.0555 21 8 8.5241 -9.7986 11.0885 22 14 10.4050 -8.8654 12.7853 23 1 9.4070 -8.1645 13.6326 24 1 10.6761 -10.2113 13.3511 25 1 11.6645 -8.0794 12.7509 26 7 8.9651 -7.4172 9.2379 27 6 4.3173 -2.0477 5.8825 28 6 3.8650 -1.3915 4.7562 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5740 1.7564 -0.0005 33 1 2.1207 2.2703 -0.8899 34 1 2.1207 2.2703 0.8900 35 1 2.1207 -1.9059 -1.5212 36 1 2.1207 -0.3644 -2.4112 37 1 3.5740 -0.8778 -1.5214 38 1 2.9460 -4.0904 2.9160 39 1 3.7679 -5.2403 4.9291 40 1 4.2414 -5.0740 7.2998 41 1 4.6344 -3.5060 8.0448 42 1 6.6831 -4.1603 6.2141 43 1 8.9002 -4.4228 7.7232 44 1 8.5066 -5.9914 6.9795 45 1 9.3125 -4.4148 10.4135 46 1 10.0470 -6.3663 12.1087 47 1 10.4685 -9.5567 10.4335 48 1 7.8257 -9.3992 11.6251 49 1 8.7304 -8.0833 8.5728 50 1 4.6996 -1.4815 6.7189 51 1 3.8929 -0.3128 4.7104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_14644196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:00:10 Heat of formation + Delta-G solvation = -4.312898 kcal Electronic energy + Delta-G solvation = -28071.738375 eV Core-core repulsion = 24060.821728 eV Total energy + Delta-G solvation = -4010.916647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.163 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.34242 -40.91974 -40.10238 -37.71218 -36.34538 -34.40064 -33.20190 -32.11237 -31.95042 -31.51921 -29.52532 -29.41733 -28.29410 -28.28965 -27.19832 -25.05545 -23.77814 -22.98993 -21.92509 -21.38785 -21.03316 -19.54934 -19.03743 -18.31148 -17.49865 -16.88667 -16.73196 -16.42097 -16.17762 -16.12806 -15.98239 -15.51466 -14.98776 -14.86059 -14.56615 -14.45639 -14.28004 -14.25869 -14.13095 -14.07729 -14.02760 -13.90876 -13.86048 -13.83545 -13.40230 -13.17032 -13.16755 -12.99303 -12.75369 -12.62043 -12.38407 -12.25755 -12.21393 -12.03759 -12.00301 -11.78938 -11.62311 -11.10432 -10.79900 -10.64908 -10.62522 -10.19448 -10.07230 -9.81465 -9.53538 -8.96638 -0.30686 0.28547 1.04968 1.19771 1.37310 1.52732 1.55196 1.58254 1.60300 1.69510 1.87458 1.91280 2.20609 2.38395 2.42220 2.46913 2.57378 2.98748 3.50552 3.50967 3.68195 3.75454 3.82188 3.82662 3.90330 4.04648 4.18963 4.27154 4.29814 4.42610 4.51745 4.58872 4.60561 4.64116 4.78285 4.82315 4.82904 4.83314 4.86149 4.88910 4.89171 4.91834 4.96018 5.17935 5.22500 5.25668 5.32393 5.37899 5.43088 5.57968 5.67414 5.67889 5.79600 5.96987 6.10856 6.47936 6.56149 6.57863 6.68539 7.21063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.200 2.800 3 C -0.461 4.461 4 C -0.461 4.461 5 C -0.392 4.392 6 C -0.191 4.191 7 C -0.010 4.010 8 C -0.109 4.109 9 C -0.096 4.096 10 C -0.098 4.098 11 C 0.166 3.834 12 N -0.715 5.715 13 C 0.512 3.488 14 O -0.575 6.575 15 C -0.066 4.066 16 C 0.034 3.966 17 C -0.200 4.200 18 C -0.216 4.216 19 C -0.017 4.017 20 C -0.060 4.060 21 O -0.557 6.557 22 Si 1.013 2.987 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.256 1.256 26 N -0.533 5.533 27 C -0.095 4.095 28 C -0.108 4.108 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.416 0.584 43 H 0.143 0.857 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.127 0.873 48 H 0.389 0.611 49 H 0.421 0.579 50 H 0.146 0.854 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.902 2.682 -6.642 7.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.381 2.619 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.423 4.423 6 C -0.191 4.191 7 C -0.010 4.010 8 C -0.126 4.126 9 C -0.114 4.114 10 C -0.098 4.098 11 C 0.043 3.957 12 N -0.368 5.368 13 C 0.299 3.701 14 O -0.453 6.453 15 C -0.106 4.106 16 C -0.081 4.081 17 C -0.225 4.225 18 C -0.241 4.241 19 C -0.131 4.131 20 C -0.170 4.170 21 O -0.364 6.364 22 Si 0.836 3.164 23 H -0.187 1.187 24 H -0.194 1.194 25 H -0.180 1.180 26 N -0.128 5.128 27 C -0.114 4.114 28 C -0.126 4.126 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.253 0.747 43 H 0.161 0.839 44 H 0.148 0.852 45 H 0.157 0.843 46 H 0.157 0.843 47 H 0.145 0.855 48 H 0.238 0.762 49 H 0.259 0.741 50 H 0.164 0.836 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.154 1.939 -5.443 5.892 hybrid contribution -0.485 0.099 -0.276 0.567 sum 0.669 2.038 -5.719 6.108 Atomic orbital electron populations 1.26238 1.20610 1.04872 1.05330 0.76305 0.64867 0.63487 0.57198 1.26213 1.06630 1.18688 1.05380 1.26213 1.06612 1.08505 1.15550 1.37485 0.99170 1.00551 1.05053 1.21598 1.01119 1.00078 0.96320 1.16524 1.00075 0.93213 0.91223 1.21384 0.99479 0.92695 0.99088 1.21202 0.97180 1.00994 0.92033 1.19937 1.00620 0.93774 0.95508 1.20084 0.81389 0.99541 0.94730 1.45953 1.09829 1.59885 1.21155 1.21022 0.89937 0.76719 0.82377 1.90762 1.70642 1.53277 1.30661 1.20242 0.90920 1.03811 0.95635 1.19885 1.06963 0.82917 0.98292 1.20820 1.08105 0.99466 0.94060 1.20883 1.09991 0.92198 1.01047 1.20994 1.07942 0.96785 0.87339 1.24828 0.91563 0.88043 1.12535 1.86444 1.24649 1.50137 1.75151 0.84757 0.79702 0.79099 0.72870 1.18699 1.19353 1.18003 1.41845 1.50414 1.06788 1.13755 1.21216 0.98346 0.93861 0.97951 1.21393 0.98106 1.00581 0.92535 0.91311 0.89238 0.91266 0.91146 0.89249 0.91217 0.91194 0.89244 0.91169 0.84886 0.83650 0.90978 0.90912 0.74700 0.83932 0.85230 0.84287 0.84264 0.85497 0.76238 0.74056 0.83590 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.21 8.65 113.37 0.98 3.19 16 2 Si 1.20 -7.13 14.26 68.60 0.98 -6.15 16 3 C -0.46 2.40 8.65 113.37 0.98 3.38 16 4 C -0.46 2.42 8.65 113.37 0.98 3.41 16 5 C -0.39 -1.45 12.14 74.32 0.90 -0.55 16 6 C -0.19 -1.45 13.24 30.01 0.40 -1.05 16 7 C -0.01 -0.06 5.72 -21.41 -0.12 -0.18 16 8 C -0.11 -0.27 9.75 22.52 0.22 -0.05 16 9 C -0.10 0.08 9.68 22.23 0.22 0.30 16 10 C -0.10 0.13 5.25 -19.81 -0.10 0.03 16 11 C 0.17 -0.17 5.79 85.63 0.50 0.33 16 12 N -0.71 2.46 5.55 -466.78 -2.59 -0.13 16 13 C 0.51 0.74 7.82 87.66 0.69 1.43 16 14 O -0.57 -6.88 16.03 -3.03 -0.05 -6.93 16 15 C -0.07 0.29 6.24 29.10 0.18 0.47 16 16 C 0.03 0.10 5.66 41.08 0.23 0.33 16 17 C -0.20 -1.24 10.76 22.14 0.24 -1.00 16 18 C -0.22 -1.37 9.37 22.14 0.21 -1.16 16 19 C -0.02 -0.07 6.50 41.08 0.27 0.20 16 20 C -0.06 -0.05 3.08 71.24 0.22 0.17 16 21 O -0.56 -1.43 12.88 -148.98 -1.92 -3.35 16 22 Si 1.01 0.65 25.87 68.60 1.77 2.43 16 23 H -0.26 -0.68 7.11 99.48 0.71 0.02 16 24 H -0.27 -0.73 7.11 99.48 0.71 -0.02 16 25 H -0.26 -0.43 7.11 99.48 0.71 0.28 16 26 N -0.53 -1.36 6.07 -171.12 -1.04 -2.40 16 27 C -0.10 0.08 9.68 22.23 0.22 0.29 16 28 C -0.11 -0.27 9.75 22.52 0.22 -0.05 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 31 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 32 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 33 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 34 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 35 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 36 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 37 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 38 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 39 H 0.15 -0.64 8.06 -2.91 -0.02 -0.67 16 40 H 0.07 0.05 8.08 -2.39 -0.02 0.03 16 41 H 0.07 0.06 8.08 -2.39 -0.02 0.04 16 42 H 0.42 -3.59 8.46 -92.71 -0.78 -4.38 16 43 H 0.14 -1.32 8.14 -2.39 -0.02 -1.34 16 44 H 0.13 -1.31 8.14 -2.38 -0.02 -1.33 16 45 H 0.14 0.58 8.06 -2.91 -0.02 0.56 16 46 H 0.14 0.59 6.22 -2.91 -0.02 0.57 16 47 H 0.13 -0.26 7.96 -2.39 -0.02 -0.27 16 48 H 0.39 -0.70 8.70 -74.06 -0.64 -1.34 16 49 H 0.42 -0.60 8.96 -92.71 -0.83 -1.43 16 50 H 0.15 -0.63 8.06 -2.91 -0.02 -0.65 16 51 H 0.13 0.09 8.06 -2.91 -0.02 0.06 16 Total: 0.00 -24.69 443.11 4.03 -20.66 By element: Atomic # 1 Polarization: -13.08 SS G_CDS: -0.54 Total: -13.62 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 7.41 Total: 9.49 kcal Atomic # 7 Polarization: 1.09 SS G_CDS: -3.63 Total: -2.54 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.97 Total: -10.28 kcal Atomic # 14 Polarization: -6.47 SS G_CDS: 2.75 Total: -3.72 kcal Total: -24.69 4.03 -20.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_14644196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.346 kcal (2) G-P(sol) polarization free energy of solvation -24.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds