Wall clock time and date at job start Sun Mar 7 2021 04:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86299 * 109.47081 * 2 1 4 4 C 1.86297 * 109.47062 * 239.99972 * 2 1 3 5 5 C 1.89995 * 109.46721 * 119.99898 * 2 1 3 6 6 C 3.07403 * 109.46854 * 119.99876 * 2 1 3 7 7 C 4.50603 * 109.46918 * 119.99786 * 2 1 3 8 8 C 1.39532 * 120.14296 * 266.12786 * 7 6 5 9 9 C 1.37969 * 119.85592 * 180.02562 * 8 7 6 10 10 C 1.38343 * 120.14335 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.85876 * 179.97438 * 10 9 8 12 12 N 1.46491 * 109.47136 * 90.00007 * 11 10 9 13 13 C 1.34776 * 120.00139 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99889 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00096 * 180.02562 * 13 12 11 16 16 C 1.53542 * 109.82217 * 278.20368 * 15 13 12 17 17 C 1.53036 * 108.56279 * 179.51014 * 16 15 13 18 18 C 1.50196 * 110.38108 * 49.38644 * 17 16 15 19 19 C 1.50706 * 118.54786 * 160.17334 * 18 17 16 20 20 O 1.42894 * 109.47150 * 70.20821 * 19 18 17 21 21 Si 1.86299 * 109.47145 * 190.21476 * 19 18 17 22 22 H 1.48504 * 109.46936 * 179.97438 * 21 19 18 23 23 H 1.48497 * 109.46882 * 299.99545 * 21 19 18 24 24 H 1.48501 * 109.47307 * 59.99802 * 21 19 18 25 25 C 1.31115 * 122.91053 * 340.39542 * 18 17 16 26 26 N 1.38930 * 121.84506 * 359.90103 * 25 18 17 27 27 C 1.38340 * 120.28443 * 0.25576 * 10 9 8 28 28 C 1.37973 * 120.14428 * 359.44714 * 27 10 9 29 29 H 1.09003 * 109.47008 * 300.00549 * 1 2 3 30 30 H 1.09007 * 109.46772 * 59.99862 * 1 2 3 31 31 H 1.08992 * 109.47669 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46910 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47409 * 299.99243 * 3 2 1 34 34 H 1.08991 * 109.47249 * 60.00085 * 3 2 1 35 35 H 1.09007 * 109.46684 * 299.99880 * 4 2 1 36 36 H 1.08995 * 109.47693 * 59.99984 * 4 2 1 37 37 H 1.09000 * 109.47356 * 180.02562 * 4 2 1 38 38 H 1.07999 * 120.07070 * 0.02562 * 8 7 6 39 39 H 1.08001 * 119.92717 * 180.02562 * 9 8 7 40 40 H 1.09000 * 109.46961 * 330.00143 * 11 10 9 41 41 H 1.08998 * 109.47035 * 210.00526 * 11 10 9 42 42 H 0.96999 * 120.00083 * 0.02562 * 12 11 10 43 43 H 1.08996 * 109.86580 * 39.10211 * 15 13 12 44 44 H 1.09002 * 109.62588 * 299.23934 * 16 15 13 45 45 H 1.09000 * 109.61911 * 59.79139 * 16 15 13 46 46 H 1.09009 * 109.32738 * 169.83365 * 17 16 15 47 47 H 1.09003 * 109.33298 * 289.48522 * 17 16 15 48 48 H 1.09001 * 109.46810 * 310.20941 * 19 18 17 49 49 H 0.96702 * 114.00308 * 180.02562 * 20 19 18 50 50 H 1.08002 * 119.08189 * 180.18606 * 25 18 17 51 51 H 0.96992 * 120.55967 * 166.92540 * 26 25 18 52 52 H 1.08004 * 119.92782 * 179.69801 * 27 10 9 53 53 H 1.07999 * 120.07574 * 180.25250 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4962 -0.8956 1.5514 6 6 2.8875 -1.4491 2.5100 7 6 3.3649 -2.1241 3.6793 8 6 3.0974 -1.6047 4.9464 9 6 3.5606 -2.2595 6.0690 10 6 4.2892 -3.4284 5.9402 11 6 4.7926 -4.1382 7.1707 12 7 3.7872 -5.1026 7.6237 13 6 4.0212 -5.8572 8.7156 14 8 5.0643 -5.7383 9.3228 15 6 2.9872 -6.8497 9.1813 16 6 1.9119 -6.1315 10.0091 17 6 0.8723 -7.1617 10.4561 18 6 1.5482 -8.3556 11.0674 19 6 0.7416 -9.2593 11.9640 20 8 -0.2102 -9.9817 11.1803 21 14 1.8793 -10.4598 12.8213 22 1 1.0845 -11.3499 13.7053 23 1 2.5919 -11.2771 11.8067 24 1 2.8684 -9.7091 13.6358 25 6 2.8101 -8.6441 10.8588 26 7 3.6175 -7.8572 10.0471 27 6 4.5628 -3.9455 4.6866 28 6 4.1002 -3.3036 3.5563 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.5740 1.7564 0.0005 33 1 2.1208 2.2703 -0.8901 34 1 2.1207 2.2703 0.8899 35 1 2.1206 -1.9059 -1.5210 36 1 2.1207 -0.3645 -2.4111 37 1 3.5740 -0.8786 -1.5209 38 1 2.5290 -0.6920 5.0482 39 1 3.3538 -1.8588 7.0503 40 1 4.9787 -3.4097 7.9597 41 1 5.7185 -4.6625 6.9344 42 1 2.9531 -5.1980 7.1379 43 1 2.5276 -7.3368 8.3213 44 1 2.3704 -5.6708 10.8841 45 1 1.4307 -5.3668 9.3994 46 1 0.2058 -6.7071 11.1892 47 1 0.2913 -7.4861 9.5927 48 1 0.2186 -8.6594 12.7087 49 1 -0.7659 -10.5842 11.6933 50 1 3.2326 -9.5206 11.3276 51 1 4.5808 -7.9703 10.0516 52 1 5.1364 -4.8558 4.5925 53 1 4.3109 -3.7104 2.5783 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_15413834.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:00:24 Heat of formation + Delta-G solvation = -23.570775 kcal Electronic energy + Delta-G solvation = -29174.083225 eV Core-core repulsion = 25135.020016 eV Total energy + Delta-G solvation = -4039.063209 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 372.178 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.49005 -40.48627 -39.41000 -37.38371 -36.42097 -34.46741 -33.31074 -33.13339 -32.11044 -31.49484 -29.46357 -28.29093 -28.28703 -28.23530 -26.60715 -25.31073 -23.77978 -23.65378 -22.88971 -21.76882 -19.55182 -19.35088 -19.09692 -18.31303 -17.66719 -17.41758 -16.83135 -16.46662 -16.06876 -16.00521 -15.93612 -15.44715 -15.12829 -15.03800 -14.56108 -14.45681 -14.42917 -14.24313 -14.16508 -14.12458 -14.05920 -13.88523 -13.83917 -13.69868 -13.57205 -13.17030 -13.16489 -12.98888 -12.91040 -12.64820 -12.41658 -12.38763 -12.21258 -12.12508 -12.00311 -11.70518 -11.67624 -11.62012 -11.25197 -11.01511 -10.78906 -10.64766 -10.28466 -10.08619 -10.07355 -9.53168 -8.47577 -0.31116 0.28936 1.24194 1.29562 1.37444 1.41115 1.45503 1.51712 1.53708 1.69826 1.91868 1.93371 2.35903 2.38530 2.47215 2.63615 2.97854 3.47474 3.54061 3.69837 3.74974 3.77766 3.82705 3.90726 3.93252 4.05809 4.24977 4.25456 4.29629 4.43828 4.57455 4.58717 4.63877 4.65899 4.79714 4.81738 4.83278 4.83469 4.86330 4.89277 4.89403 4.92158 4.96226 5.01981 5.16780 5.20540 5.25591 5.29673 5.38171 5.42584 5.56888 5.58250 5.67739 5.68134 5.79689 6.21310 6.39403 6.56386 6.76763 6.95143 7.02768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.200 2.800 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.392 4.392 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.099 4.099 11 C 0.165 3.835 12 N -0.707 5.707 13 C 0.516 3.484 14 O -0.571 6.571 15 C 0.138 3.862 16 C -0.122 4.122 17 C -0.051 4.051 18 C -0.248 4.248 19 C -0.055 4.055 20 O -0.566 6.566 21 Si 0.964 3.036 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.266 1.266 25 C 0.121 3.879 26 N -0.739 5.739 27 C -0.095 4.095 28 C -0.109 4.109 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.417 0.583 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.390 0.610 50 H 0.128 0.872 51 H 0.406 0.594 52 H 0.146 0.854 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 2.006 -3.456 5.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.382 2.618 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.010 4.010 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.100 4.100 11 C 0.042 3.958 12 N -0.360 5.360 13 C 0.302 3.698 14 O -0.450 6.450 15 C 0.029 3.971 16 C -0.161 4.161 17 C -0.089 4.089 18 C -0.258 4.258 19 C -0.167 4.167 20 O -0.374 6.374 21 Si 0.791 3.209 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.191 1.191 25 C 0.000 4.000 26 N -0.372 5.372 27 C -0.114 4.114 28 C -0.127 4.127 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.166 0.834 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.254 0.746 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.239 0.761 50 H 0.145 0.855 51 H 0.242 0.758 52 H 0.164 0.836 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.600 1.861 -3.031 4.405 hybrid contribution -0.072 -0.394 0.410 0.573 sum -2.671 1.467 -2.621 4.020 Atomic orbital electron populations 1.26215 1.20364 1.04921 1.05395 0.76298 0.65013 0.63356 0.57154 1.26230 1.06541 1.18844 1.05387 1.26222 1.06570 1.08543 1.15631 1.37489 0.99228 1.00463 1.05067 1.21607 1.01087 1.00117 0.96336 1.16530 0.99123 0.95196 0.90105 1.21392 0.99864 1.00399 0.90981 1.21220 0.96316 0.94468 0.99216 1.19913 0.99676 0.96211 0.94190 1.20161 0.91217 0.91104 0.93270 1.45899 1.22050 1.39443 1.28601 1.20796 0.87451 0.81578 0.79940 1.90729 1.28604 1.68978 1.56677 1.21103 0.92103 0.88825 0.95086 1.21871 0.95690 0.98349 1.00141 1.19972 0.96507 0.91945 1.00435 1.20254 0.94467 1.01461 1.09602 1.24470 0.96803 0.98338 0.97068 1.86485 1.52106 1.60235 1.38573 0.85541 0.78872 0.78581 0.77869 1.18483 1.19739 1.19052 1.20466 0.92256 0.93678 0.93565 1.44302 1.08553 1.38844 1.45453 1.21214 0.98915 1.00156 0.91079 1.21386 0.97214 0.94185 0.99934 0.91175 0.89242 0.91210 0.91317 0.89236 0.91193 0.91172 0.89247 0.91258 0.84819 0.83446 0.90399 0.90484 0.74640 0.87512 0.91912 0.88026 0.90127 0.91079 0.90041 0.76058 0.85454 0.75797 0.83631 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.35 8.65 113.37 0.98 3.34 16 2 Si 1.20 -7.01 14.26 68.60 0.98 -6.04 16 3 C -0.46 2.24 8.65 113.37 0.98 3.22 16 4 C -0.46 2.30 8.65 113.37 0.98 3.28 16 5 C -0.39 -1.48 12.14 74.32 0.90 -0.58 16 6 C -0.19 -1.46 13.24 30.01 0.40 -1.06 16 7 C -0.01 -0.05 5.72 -21.41 -0.12 -0.17 16 8 C -0.11 -0.24 9.75 22.52 0.22 -0.02 16 9 C -0.09 0.12 9.68 22.23 0.22 0.33 16 10 C -0.10 0.17 5.25 -19.81 -0.10 0.07 16 11 C 0.17 -0.27 5.79 85.64 0.50 0.22 16 12 N -0.71 2.05 5.55 -466.81 -2.59 -0.54 16 13 C 0.52 1.20 7.08 87.66 0.62 1.82 16 14 O -0.57 -6.07 16.10 -3.03 -0.05 -6.12 16 15 C 0.14 0.01 3.36 44.32 0.15 0.16 16 16 C -0.12 0.16 5.47 30.79 0.17 0.33 16 17 C -0.05 -0.01 5.85 29.70 0.17 0.16 16 18 C -0.25 -0.75 5.40 -16.76 -0.09 -0.84 16 19 C -0.05 -0.02 2.80 71.24 0.20 0.18 16 20 O -0.57 -0.67 12.86 -148.98 -1.92 -2.59 16 21 Si 0.96 0.67 25.21 68.60 1.73 2.40 16 22 H -0.26 -0.17 7.11 99.48 0.71 0.54 16 23 H -0.27 -1.02 6.87 99.48 0.68 -0.34 16 24 H -0.27 -0.77 7.11 99.48 0.71 -0.07 16 25 C 0.12 0.47 9.61 83.41 0.80 1.27 16 26 N -0.74 -2.60 5.46 -328.99 -1.80 -4.39 16 27 C -0.10 0.09 9.68 22.23 0.22 0.30 16 28 C -0.11 -0.27 9.75 22.52 0.22 -0.06 16 29 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 30 H 0.09 -0.64 7.96 -2.38 -0.02 -0.66 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 33 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 34 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 35 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 36 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 37 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 38 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.15 -0.74 8.06 -2.91 -0.02 -0.76 16 40 H 0.08 -0.04 8.08 -2.39 -0.02 -0.06 16 41 H 0.08 -0.03 8.08 -2.39 -0.02 -0.05 16 42 H 0.42 -3.06 8.46 -92.71 -0.78 -3.85 16 43 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H 0.08 -0.08 8.14 -2.38 -0.02 -0.10 16 47 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.08 -0.23 7.96 -2.39 -0.02 -0.25 16 49 H 0.39 -2.82 8.74 -74.06 -0.65 -3.46 16 50 H 0.13 0.34 4.33 -2.91 -0.01 0.32 16 51 H 0.41 1.66 8.12 -92.71 -0.75 0.91 16 52 H 0.15 -0.64 8.06 -2.91 -0.02 -0.67 16 53 H 0.13 0.11 8.06 -2.91 -0.02 0.08 16 Total: 0.00 -20.88 445.47 3.24 -17.64 By element: Atomic # 1 Polarization: -11.79 SS G_CDS: -0.52 Total: -12.31 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 7.40 Total: 11.94 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -4.39 Total: -4.93 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.96 Total: -8.71 kcal Atomic # 14 Polarization: -6.34 SS G_CDS: 2.71 Total: -3.63 kcal Total: -20.88 3.24 -17.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_15413834.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.935 kcal (2) G-P(sol) polarization free energy of solvation -20.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds