Wall clock time and date at job start Sun Mar 7 2021 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86300 * 109.47384 * 2 1 4 4 C 1.86296 * 109.47109 * 239.99478 * 2 1 3 5 5 C 1.90006 * 109.46957 * 120.00113 * 2 1 3 6 6 C 3.07399 * 109.46874 * 119.99906 * 2 1 3 7 7 C 4.50602 * 109.46947 * 119.99929 * 2 1 3 8 8 C 1.39528 * 120.14497 * 46.36760 * 7 6 5 9 9 C 1.37975 * 119.85697 * 180.02562 * 8 7 6 10 10 C 1.38340 * 120.14323 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.85949 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.46671 * 89.99909 * 11 10 9 13 13 C 1.34776 * 119.99639 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00192 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99830 * 180.02562 * 13 12 11 16 16 C 1.53041 * 109.32944 * 216.51038 * 15 13 12 17 17 C 1.53543 * 108.56136 * 190.17170 * 16 15 13 18 18 N 1.47030 * 107.65931 * 60.95031 * 17 16 15 19 19 C 1.38925 * 118.83782 * 316.10751 * 18 17 16 20 20 C 1.31116 * 121.84236 * 13.81046 * 19 18 17 21 21 C 1.50700 * 118.54474 * 179.35940 * 20 19 18 22 22 O 1.42908 * 109.47235 * 108.28670 * 21 20 19 23 23 Si 1.86303 * 109.47351 * 348.28553 * 21 20 19 24 24 H 1.48503 * 109.46684 * 60.00216 * 23 21 20 25 25 H 1.48500 * 109.47015 * 300.00374 * 23 21 20 26 26 H 1.48493 * 109.47197 * 179.97438 * 23 21 20 27 27 C 1.38342 * 120.28527 * 0.25975 * 10 9 8 28 28 C 1.37977 * 120.14375 * 359.44151 * 27 10 9 29 29 H 1.08995 * 109.47180 * 300.00353 * 1 2 3 30 30 H 1.08999 * 109.46845 * 60.00259 * 1 2 3 31 31 H 1.08997 * 109.47478 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47311 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46918 * 299.99696 * 3 2 1 34 34 H 1.08996 * 109.46912 * 59.99269 * 3 2 1 35 35 H 1.08992 * 109.47770 * 300.00297 * 4 2 1 36 36 H 1.09008 * 109.46904 * 60.00575 * 4 2 1 37 37 H 1.09000 * 109.47061 * 180.02562 * 4 2 1 38 38 H 1.08000 * 120.07384 * 359.97438 * 8 7 6 39 39 H 1.08005 * 119.92632 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.46983 * 330.00703 * 11 10 9 41 41 H 1.08992 * 109.47424 * 210.00637 * 11 10 9 42 42 H 0.96999 * 120.00227 * 0.02562 * 12 11 10 43 43 H 1.08995 * 109.18899 * 336.07896 * 15 13 12 44 44 H 1.09000 * 109.62484 * 309.88959 * 16 15 13 45 45 H 1.08996 * 109.62356 * 70.45153 * 16 15 13 46 46 H 1.08997 * 109.82058 * 180.49138 * 17 16 15 47 47 H 1.09005 * 109.82080 * 301.41223 * 17 16 15 48 48 H 0.96999 * 120.55659 * 136.31608 * 18 17 16 49 49 H 1.07998 * 119.08074 * 193.57377 * 19 18 17 50 50 H 1.09000 * 109.46980 * 228.28511 * 21 20 19 51 51 H 0.96692 * 114.00100 * 300.00083 * 22 21 20 52 52 H 1.07999 * 119.92844 * 179.70495 * 27 10 9 53 53 H 1.07996 * 120.07452 * 180.25773 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4963 -0.8957 1.5514 6 6 2.8875 -1.4491 2.5100 7 6 3.3649 -2.1241 3.6792 8 6 3.3303 -3.5173 3.7471 9 6 3.7913 -4.1616 4.8768 10 6 4.2865 -3.4293 5.9409 11 6 4.7878 -4.1396 7.1719 12 7 6.2162 -4.4279 7.0216 13 6 6.8828 -5.0623 8.0062 14 8 6.3001 -5.3949 9.0165 15 6 8.3524 -5.3583 7.8518 16 6 8.6656 -6.7142 8.4888 17 6 10.1903 -6.8840 8.5519 18 7 10.7256 -5.7997 9.3883 19 6 10.2398 -4.5110 9.2065 20 6 9.1506 -4.2732 8.5163 21 6 8.6824 -2.8475 8.3783 22 8 8.9071 -2.3996 7.0400 23 14 9.6296 -1.7653 9.5626 24 1 11.0797 -1.8423 9.2517 25 1 9.3961 -2.2307 10.9533 26 1 9.1686 -0.3603 9.4262 27 6 4.3180 -2.0475 5.8822 28 6 3.8658 -1.3913 4.7559 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.5741 1.7564 0.0005 33 1 2.1208 2.2702 -0.8900 34 1 2.1206 2.2703 0.8899 35 1 2.1207 -1.9059 -1.5211 36 1 2.1207 -0.3645 -2.4111 37 1 3.5740 -0.8787 -1.5208 38 1 2.9428 -4.0902 2.9176 39 1 3.7647 -5.2400 4.9307 40 1 4.2403 -5.0733 7.3009 41 1 4.6349 -3.5053 8.0450 42 1 6.6823 -4.1615 6.2137 43 1 8.6016 -5.3918 6.7913 44 1 8.2514 -6.7498 9.4964 45 1 8.2333 -7.5113 7.8840 46 1 10.4367 -7.8488 8.9952 47 1 10.6113 -6.8190 7.5485 48 1 11.4082 -5.9810 10.0533 49 1 10.7721 -3.6820 9.6491 50 1 7.6180 -2.7910 8.6065 51 1 9.8347 -2.4229 6.7680 52 1 4.7014 -1.4813 6.7182 53 1 3.8948 -0.3127 4.7097 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_15608500.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:00:39 Heat of formation + Delta-G solvation = -24.695251 kcal Electronic energy + Delta-G solvation = -30297.623727 eV Core-core repulsion = 26258.511757 eV Total energy + Delta-G solvation = -4039.111970 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 372.178 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.48602 -40.47067 -39.23185 -37.46515 -36.28736 -34.36839 -33.45414 -32.75235 -32.09015 -31.45447 -29.45473 -28.28227 -28.27884 -27.96336 -26.77781 -25.58915 -23.75644 -23.22434 -22.90125 -21.69165 -19.52747 -19.25949 -19.19725 -18.16615 -17.29788 -17.13060 -16.90913 -16.43210 -16.28688 -16.03718 -15.93028 -15.49722 -15.06454 -14.95184 -14.68474 -14.51291 -14.44711 -14.35458 -14.15135 -14.10217 -13.99386 -13.87894 -13.82207 -13.57972 -13.23539 -13.15988 -13.15593 -12.98175 -12.67717 -12.57293 -12.36823 -12.31910 -12.20645 -12.19008 -11.98968 -11.85598 -11.65061 -11.60433 -11.36663 -10.87380 -10.72655 -10.63585 -10.19832 -10.12712 -10.04219 -9.49769 -8.45696 -0.27628 0.31030 1.18610 1.24841 1.36478 1.39251 1.48460 1.58738 1.68923 1.71334 1.90152 2.19329 2.40131 2.48209 2.52338 2.65845 3.01183 3.52633 3.57932 3.74299 3.78174 3.82104 3.84235 3.91928 3.96905 4.19440 4.27616 4.31663 4.35560 4.39316 4.60003 4.60421 4.62124 4.72215 4.75966 4.83395 4.84119 4.84331 4.85194 4.87196 4.90056 4.90235 4.93061 4.97836 5.18811 5.20004 5.26951 5.39276 5.39574 5.45745 5.46008 5.58951 5.68513 5.68911 5.81841 6.30451 6.54650 6.58301 6.86333 6.93947 7.25502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.203 2.797 3 C -0.462 4.462 4 C -0.461 4.461 5 C -0.392 4.392 6 C -0.191 4.191 7 C -0.010 4.010 8 C -0.108 4.108 9 C -0.096 4.096 10 C -0.097 4.097 11 C 0.163 3.837 12 N -0.711 5.711 13 C 0.526 3.474 14 O -0.584 6.584 15 C -0.030 4.030 16 C -0.127 4.127 17 C 0.124 3.876 18 N -0.748 5.748 19 C 0.146 3.854 20 C -0.290 4.290 21 C -0.056 4.056 22 O -0.551 6.551 23 Si 0.970 3.030 24 H -0.235 1.235 25 H -0.271 1.271 26 H -0.280 1.280 27 C -0.095 4.095 28 C -0.108 4.108 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.413 0.587 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.412 0.588 49 H 0.138 0.862 50 H 0.088 0.912 51 H 0.387 0.613 52 H 0.141 0.859 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -0.106 -4.606 6.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.384 2.616 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.010 4.010 8 C -0.126 4.126 9 C -0.114 4.114 10 C -0.097 4.097 11 C 0.040 3.960 12 N -0.363 5.363 13 C 0.314 3.686 14 O -0.464 6.464 15 C -0.051 4.051 16 C -0.166 4.166 17 C 0.000 4.000 18 N -0.378 5.378 19 C 0.023 3.977 20 C -0.301 4.301 21 C -0.167 4.167 22 O -0.358 6.358 23 Si 0.796 3.204 24 H -0.158 1.158 25 H -0.196 1.196 26 H -0.206 1.206 27 C -0.113 4.113 28 C -0.126 4.126 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.250 0.750 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.117 0.883 47 H 0.091 0.909 48 H 0.248 0.752 49 H 0.154 0.846 50 H 0.106 0.894 51 H 0.236 0.764 52 H 0.159 0.841 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.374 0.070 -3.261 4.693 hybrid contribution 0.532 -0.334 0.194 0.657 sum 3.906 -0.264 -3.067 4.974 Atomic orbital electron populations 1.26232 1.20578 1.04878 1.05318 0.76267 0.64839 0.63377 0.57114 1.26221 1.06599 1.18788 1.05352 1.26211 1.06588 1.08514 1.15562 1.37514 0.99187 1.00502 1.05033 1.21580 1.01107 1.00096 0.96287 1.16503 1.00098 0.93216 0.91192 1.21377 0.99498 0.92678 0.99016 1.21196 0.97209 1.00981 0.92024 1.19932 1.00414 0.93751 0.95636 1.20120 0.81535 0.99565 0.94755 1.46089 1.09699 1.59307 1.21218 1.20943 0.89692 0.75918 0.82077 1.90679 1.70721 1.54289 1.30692 1.19621 0.88951 0.94789 1.01761 1.21808 0.97683 0.95469 1.01646 1.21672 0.91651 0.90777 0.95924 1.44644 1.45425 1.05076 1.42664 1.20608 0.93407 0.88421 0.95271 1.20427 0.99830 0.95497 1.14365 1.24584 1.05414 0.95128 0.91623 1.86446 1.32946 1.87689 1.28670 0.85448 0.79707 0.77779 0.77500 1.15842 1.19606 1.20568 1.21171 0.98214 0.93942 0.97993 1.21360 0.98177 1.00497 0.92552 0.91336 0.89215 0.91248 0.91211 0.89224 0.91269 0.91188 0.89221 0.91218 0.84717 0.83586 0.90681 0.91140 0.75030 0.87836 0.92347 0.89732 0.88257 0.90866 0.75190 0.84554 0.89443 0.76380 0.84120 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.87 8.65 113.37 0.98 2.85 16 2 Si 1.20 -6.05 14.26 68.60 0.98 -5.07 16 3 C -0.46 1.94 8.65 113.37 0.98 2.92 16 4 C -0.46 2.03 8.65 113.37 0.98 3.01 16 5 C -0.39 -1.97 12.14 74.32 0.90 -1.06 16 6 C -0.19 -1.77 13.24 30.02 0.40 -1.38 16 7 C -0.01 -0.08 5.72 -21.41 -0.12 -0.20 16 8 C -0.11 -0.51 9.75 22.52 0.22 -0.29 16 9 C -0.10 -0.18 9.68 22.23 0.22 0.03 16 10 C -0.10 -0.22 5.25 -19.81 -0.10 -0.32 16 11 C 0.16 0.48 5.79 85.64 0.50 0.97 16 12 N -0.71 -1.73 5.48 -466.79 -2.56 -4.29 16 13 C 0.53 3.41 5.27 87.66 0.46 3.87 16 14 O -0.58 -8.70 16.10 -3.03 -0.05 -8.75 16 15 C -0.03 -0.04 2.69 -12.43 -0.03 -0.08 16 16 C -0.13 -0.07 5.32 30.79 0.16 0.09 16 17 C 0.12 -0.56 7.15 86.46 0.62 0.06 16 18 N -0.75 2.58 5.83 -345.89 -2.02 0.56 16 19 C 0.15 -0.15 9.61 83.41 0.80 0.65 16 20 C -0.29 -0.29 5.02 -16.76 -0.08 -0.37 16 21 C -0.06 -0.06 2.44 71.24 0.17 0.11 16 22 O -0.55 0.50 12.88 -148.98 -1.92 -1.41 16 23 Si 0.97 0.45 25.28 68.60 1.73 2.18 16 24 H -0.23 0.64 6.81 99.48 0.68 1.31 16 25 H -0.27 -0.99 7.11 99.48 0.71 -0.28 16 26 H -0.28 -1.26 7.11 99.48 0.71 -0.55 16 27 C -0.09 -0.29 9.68 22.23 0.22 -0.07 16 28 C -0.11 -0.60 9.75 22.52 0.22 -0.38 16 29 H 0.07 -0.20 7.96 -2.39 -0.02 -0.21 16 30 H 0.09 -0.56 7.96 -2.39 -0.02 -0.58 16 31 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 32 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 33 H 0.09 -0.57 7.96 -2.39 -0.02 -0.59 16 34 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 35 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 36 H 0.09 -0.59 7.96 -2.38 -0.02 -0.61 16 37 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 38 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 39 H 0.15 -0.28 8.06 -2.91 -0.02 -0.30 16 40 H 0.07 0.27 8.08 -2.38 -0.02 0.25 16 41 H 0.07 0.31 8.08 -2.39 -0.02 0.30 16 42 H 0.41 -0.11 8.42 -92.71 -0.78 -0.90 16 43 H 0.10 -0.22 8.09 -2.39 -0.02 -0.24 16 44 H 0.06 0.38 7.51 -2.39 -0.02 0.37 16 45 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 47 H 0.07 -0.45 8.14 -2.38 -0.02 -0.47 16 48 H 0.41 -2.97 8.96 -92.71 -0.83 -3.80 16 49 H 0.14 -0.49 4.34 -2.91 -0.01 -0.50 16 50 H 0.09 0.40 6.76 -2.39 -0.02 0.39 16 51 H 0.39 -3.00 8.70 -74.06 -0.64 -3.64 16 52 H 0.14 0.06 8.06 -2.91 -0.02 0.03 16 53 H 0.13 0.48 8.06 -2.91 -0.02 0.46 16 Total: 0.00 -20.84 442.59 3.06 -17.78 By element: Atomic # 1 Polarization: -10.82 SS G_CDS: -0.59 Total: -11.41 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 7.48 Total: 10.41 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -4.57 Total: -3.73 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.97 Total: -10.16 kcal Atomic # 14 Polarization: -5.60 SS G_CDS: 2.71 Total: -2.89 kcal Total: -20.84 3.06 -17.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_15608500.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.915 kcal (2) G-P(sol) polarization free energy of solvation -20.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds