Wall clock time and date at job start Sun Mar 7 2021 04:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86301 * 109.47254 * 2 1 4 4 C 1.86303 * 109.47422 * 240.00196 * 2 1 3 5 5 C 1.89995 * 109.47138 * 119.99864 * 2 1 3 6 6 C 3.07400 * 109.47163 * 120.00085 * 2 1 3 7 7 C 4.50598 * 109.47109 * 119.99947 * 2 1 3 8 8 C 1.39536 * 120.13753 * 254.46834 * 7 6 5 9 9 C 1.37976 * 119.85557 * 180.02562 * 8 7 6 10 10 C 1.38349 * 120.13826 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.85499 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.47195 * 89.99868 * 11 10 9 13 13 C 1.34782 * 120.00246 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99901 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00106 * 180.02562 * 13 12 11 16 16 O 1.42903 * 109.47218 * 180.02562 * 15 13 12 17 17 C 1.35897 * 117.00214 * 179.97438 * 16 15 13 18 18 C 1.38709 * 120.05637 * 359.95484 * 17 16 15 19 19 C 1.38172 * 119.94642 * 179.97438 * 18 17 16 20 20 C 1.38245 * 120.05216 * 0.02562 * 19 18 17 21 21 C 1.38287 * 120.11339 * 0.02562 * 20 19 18 22 22 C 1.38125 * 120.05453 * 359.95334 * 21 20 19 23 23 C 1.50699 * 120.02390 * 180.02562 * 22 21 20 24 24 O 1.42895 * 109.47124 * 105.00291 * 23 22 21 25 25 Si 1.86302 * 109.47415 * 344.99961 * 23 22 21 26 26 H 1.48499 * 109.47007 * 59.99977 * 25 23 22 27 27 H 1.48500 * 109.46966 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.46711 * 300.00285 * 25 23 22 29 29 C 1.38340 * 120.29034 * 0.25516 * 10 9 8 30 30 C 1.37980 * 120.13650 * 359.45122 * 29 10 9 31 31 H 1.09003 * 109.47456 * 299.99952 * 1 2 3 32 32 H 1.09007 * 109.47343 * 60.00113 * 1 2 3 33 33 H 1.08999 * 109.47496 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47785 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.47304 * 300.00470 * 3 2 1 36 36 H 1.09003 * 109.46850 * 59.99677 * 3 2 1 37 37 H 1.09002 * 109.46638 * 300.00052 * 4 2 1 38 38 H 1.09007 * 109.47114 * 59.99550 * 4 2 1 39 39 H 1.08994 * 109.47425 * 179.97438 * 4 2 1 40 40 H 1.07997 * 120.07946 * 0.02562 * 8 7 6 41 41 H 1.07997 * 119.93512 * 180.02562 * 9 8 7 42 42 H 1.09008 * 109.47116 * 330.00142 * 11 10 9 43 43 H 1.09000 * 109.47116 * 210.00464 * 11 10 9 44 44 H 0.96999 * 119.99996 * 0.02562 * 12 11 10 45 45 H 1.08997 * 109.47633 * 60.00409 * 15 13 12 46 46 H 1.09008 * 109.47230 * 300.00084 * 15 13 12 47 47 H 1.08002 * 120.02844 * 0.04164 * 18 17 16 48 48 H 1.08002 * 119.97211 * 180.29545 * 19 18 17 49 49 H 1.07997 * 119.93859 * 179.97438 * 20 19 18 50 50 H 1.07998 * 119.97069 * 179.97438 * 21 20 19 51 51 H 1.09005 * 109.46839 * 225.00112 * 23 22 21 52 52 H 0.96697 * 114.00132 * 59.99807 * 24 23 22 53 53 H 1.07997 * 119.93200 * 179.70259 * 29 10 9 54 54 H 1.08004 * 120.06714 * 180.24620 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5212 5 6 2.4963 -0.8956 1.5513 6 6 2.8876 -1.4491 2.5099 7 6 3.3649 -2.1241 3.6791 8 6 3.3141 -1.4926 4.9224 9 6 3.7761 -2.1482 6.0451 10 6 4.2893 -3.4287 5.9400 11 6 4.7927 -4.1385 7.1703 12 7 3.6954 -4.8913 7.7830 13 6 3.9134 -5.6091 8.9028 14 8 5.0178 -5.6315 9.4034 15 6 2.7848 -6.3839 9.5327 16 8 3.2620 -7.0569 10.6995 17 6 2.3631 -7.8058 11.3909 18 6 1.0487 -7.8903 10.9560 19 6 0.1368 -8.6528 11.6604 20 6 0.5334 -9.3306 12.7981 21 6 1.8429 -9.2471 13.2344 22 6 2.7584 -8.4866 12.5334 23 6 4.1855 -8.3966 13.0092 24 8 5.0195 -9.1951 12.1674 25 14 4.2962 -9.0176 14.7621 26 1 3.8448 -10.4313 14.8158 27 1 5.7024 -8.9283 15.2310 28 1 3.4294 -8.1876 15.6369 29 6 4.3478 -4.0580 4.7094 30 6 3.8835 -3.4156 3.5800 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.5739 1.7566 0.0005 35 1 2.1206 2.2704 -0.8900 36 1 2.1206 2.2703 0.8900 37 1 2.1207 -1.9058 -1.5211 38 1 2.1207 -0.3643 -2.4112 39 1 3.5740 -0.8778 -1.5214 40 1 2.9141 -0.4929 5.0058 41 1 3.7370 -1.6608 7.0081 42 1 5.1729 -3.4060 7.8824 43 1 5.5930 -4.8243 6.8923 44 1 2.8122 -4.8737 7.3825 45 1 2.4047 -7.1162 8.8205 46 1 1.9843 -5.6983 9.8111 47 1 0.7385 -7.3615 10.0668 48 1 -0.8856 -8.7227 11.3194 49 1 -0.1810 -9.9257 13.3475 50 1 2.1502 -9.7773 14.1237 51 1 4.5168 -7.3588 12.9698 52 1 5.0112 -8.9280 11.2381 53 1 4.7540 -5.0558 4.6332 54 1 3.9261 -3.9096 2.6205 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_2989392.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:01:13 Heat of formation + Delta-G solvation = -50.288388 kcal Electronic energy + Delta-G solvation = -31769.637606 eV Core-core repulsion = 27375.244891 eV Total energy + Delta-G solvation = -4394.392715 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 397.167 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.68427 -40.91215 -40.18873 -38.50182 -37.47551 -36.40640 -34.44092 -32.77783 -32.11595 -31.95658 -31.16396 -29.60212 -29.42888 -28.29418 -28.29056 -26.97367 -26.63278 -23.78388 -23.74979 -22.87201 -22.61384 -21.69490 -19.55395 -19.46106 -18.63619 -18.32942 -17.56456 -17.37558 -16.92999 -16.77109 -16.62325 -16.28031 -16.01428 -15.76537 -15.66010 -15.46557 -15.18049 -14.86690 -14.55791 -14.44980 -14.39126 -14.17332 -14.12398 -13.91871 -13.85213 -13.84383 -13.82307 -13.37514 -13.17368 -13.16717 -12.99332 -12.74845 -12.68911 -12.61462 -12.39761 -12.26715 -12.22034 -12.12227 -12.00678 -11.84054 -11.62482 -11.24855 -11.10239 -11.03180 -10.80180 -10.65170 -10.30605 -10.07994 -9.97228 -9.54173 -9.25794 -0.32355 0.21109 0.28267 0.36722 1.17208 1.36900 1.37049 1.40381 1.45724 1.49556 1.67219 1.69397 1.92735 2.29139 2.38029 2.46835 2.62434 2.68039 2.97767 3.46816 3.52865 3.61801 3.74660 3.80810 3.82107 3.90165 3.93124 3.98638 4.05244 4.10073 4.25285 4.26884 4.29113 4.30015 4.49021 4.58138 4.58545 4.64951 4.81301 4.82891 4.83166 4.86037 4.88865 4.88999 4.91695 4.93346 4.95760 5.16151 5.19839 5.23337 5.35858 5.37648 5.41989 5.50037 5.57920 5.67394 5.67774 5.69376 5.79026 6.21171 6.38951 6.55777 6.55915 7.04511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.200 2.800 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.109 4.109 9 C -0.094 4.094 10 C -0.099 4.099 11 C 0.166 3.834 12 N -0.707 5.707 13 C 0.516 3.484 14 O -0.566 6.566 15 C 0.038 3.962 16 O -0.314 6.314 17 C 0.126 3.874 18 C -0.206 4.206 19 C -0.077 4.077 20 C -0.154 4.154 21 C -0.100 4.100 22 C -0.163 4.163 23 C -0.093 4.093 24 O -0.553 6.553 25 Si 1.040 2.960 26 H -0.254 1.254 27 H -0.277 1.277 28 H -0.238 1.238 29 C -0.094 4.094 30 C -0.109 4.109 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.419 0.581 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.159 0.841 48 H 0.155 0.845 49 H 0.148 0.852 50 H 0.136 0.864 51 H 0.069 0.931 52 H 0.373 0.627 53 H 0.147 0.853 54 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 2.919 -5.648 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.382 2.618 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.127 4.127 9 C -0.113 4.113 10 C -0.100 4.100 11 C 0.044 3.956 12 N -0.362 5.362 13 C 0.302 3.698 14 O -0.444 6.444 15 C -0.039 4.039 16 O -0.227 6.227 17 C 0.080 3.920 18 C -0.224 4.224 19 C -0.095 4.095 20 C -0.172 4.172 21 C -0.117 4.117 22 C -0.164 4.164 23 C -0.200 4.200 24 O -0.359 6.359 25 Si 0.860 3.140 26 H -0.179 1.179 27 H -0.203 1.203 28 H -0.160 1.160 29 C -0.112 4.112 30 C -0.127 4.127 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.151 0.849 41 H 0.165 0.835 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.256 0.744 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.177 0.823 48 H 0.173 0.827 49 H 0.166 0.834 50 H 0.153 0.847 51 H 0.087 0.913 52 H 0.221 0.779 53 H 0.165 0.835 54 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.734 2.279 -3.731 8.029 hybrid contribution -0.204 0.460 -1.158 1.263 sum -6.938 2.740 -4.889 8.919 Atomic orbital electron populations 1.26212 1.20316 1.04943 1.05393 0.76296 0.65036 0.63333 0.57160 1.26236 1.06535 1.18886 1.05385 1.26226 1.06556 1.08564 1.15643 1.37476 0.99194 1.00494 1.05058 1.21604 1.01098 1.00103 0.96343 1.16529 0.99934 0.94216 0.90222 1.21389 0.99586 1.00492 0.91204 1.21221 0.96822 0.94169 0.99048 1.19896 1.00707 0.94999 0.94361 1.20145 0.89120 0.94865 0.91502 1.45745 1.14751 1.49090 1.26571 1.20464 0.89283 0.79419 0.80656 1.90783 1.26728 1.63764 1.63167 1.22698 0.95594 0.97936 0.87708 1.86067 1.36799 1.60878 1.38972 1.18926 0.89143 0.91996 0.91910 1.21608 0.91796 1.05126 1.03887 1.21400 1.00490 0.93890 0.93739 1.21400 0.95765 1.01705 0.98289 1.21176 0.93956 0.96953 0.99657 1.19746 0.97387 1.02323 0.96900 1.25375 0.87442 0.99730 1.07427 1.86617 1.67457 1.58601 1.23234 0.84153 0.79489 0.79812 0.70507 1.17857 1.20266 1.16048 1.21222 0.98205 1.00653 0.91161 1.21391 0.98010 0.93411 0.99859 0.91171 0.89255 0.91168 0.91334 0.89258 0.91183 0.91135 0.89267 0.91292 0.84876 0.83526 0.90523 0.90470 0.74408 0.85801 0.85940 0.82339 0.82729 0.83428 0.84689 0.91272 0.77870 0.83508 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.60 8.65 113.37 0.98 3.58 16 2 Si 1.20 -7.56 14.26 68.60 0.98 -6.58 16 3 C -0.46 2.40 8.65 113.37 0.98 3.38 16 4 C -0.46 2.47 8.65 113.37 0.98 3.45 16 5 C -0.39 -1.25 12.14 74.32 0.90 -0.35 16 6 C -0.19 -1.33 13.24 30.01 0.40 -0.94 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 8 C -0.11 -0.17 9.75 22.52 0.22 0.04 16 9 C -0.09 0.18 9.68 22.23 0.22 0.39 16 10 C -0.10 0.25 5.25 -19.81 -0.10 0.15 16 11 C 0.17 -0.37 5.79 85.63 0.50 0.13 16 12 N -0.71 3.19 5.55 -466.79 -2.59 0.60 16 13 C 0.52 0.69 7.91 87.65 0.69 1.38 16 14 O -0.57 -6.97 16.50 16.00 0.26 -6.71 16 15 C 0.04 -0.16 5.22 71.23 0.37 0.22 16 16 O -0.31 -1.34 8.58 -73.35 -0.63 -1.97 16 17 C 0.13 0.43 6.62 22.51 0.15 0.58 16 18 C -0.21 0.42 9.04 22.37 0.20 0.62 16 19 C -0.08 0.20 10.04 22.26 0.22 0.43 16 20 C -0.15 0.06 10.04 22.28 0.22 0.28 16 21 C -0.10 -0.33 8.66 22.25 0.19 -0.14 16 22 C -0.16 -0.94 5.28 -19.77 -0.10 -1.05 16 23 C -0.09 -0.68 2.33 71.24 0.17 -0.52 16 24 O -0.55 -5.57 12.65 -148.98 -1.89 -7.46 16 25 Si 1.04 5.06 25.75 68.60 1.77 6.83 16 26 H -0.25 -1.23 6.73 99.48 0.67 -0.56 16 27 H -0.28 -2.21 7.11 99.48 0.71 -1.50 16 28 H -0.24 -0.63 7.11 99.48 0.71 0.08 16 29 C -0.09 0.18 9.68 22.23 0.22 0.39 16 30 C -0.11 -0.18 9.75 22.52 0.22 0.04 16 31 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 32 H 0.09 -0.68 7.96 -2.38 -0.02 -0.70 16 33 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 34 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 35 H 0.09 -0.64 7.96 -2.38 -0.02 -0.66 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 37 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 38 H 0.09 -0.65 7.96 -2.38 -0.02 -0.67 16 39 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 40 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 41 H 0.15 -0.80 8.06 -2.91 -0.02 -0.83 16 42 H 0.08 -0.05 8.08 -2.38 -0.02 -0.07 16 43 H 0.08 -0.05 8.08 -2.39 -0.02 -0.07 16 44 H 0.42 -4.31 8.46 -92.71 -0.78 -5.09 16 45 H 0.12 -1.23 7.66 -2.39 -0.02 -1.25 16 46 H 0.12 -1.19 7.66 -2.38 -0.02 -1.21 16 47 H 0.16 -1.40 6.30 -2.91 -0.02 -1.42 16 48 H 0.16 -1.26 8.06 -2.91 -0.02 -1.28 16 49 H 0.15 -0.72 8.06 -2.91 -0.02 -0.74 16 50 H 0.14 0.19 4.89 -2.91 -0.01 0.17 16 51 H 0.07 0.55 7.83 -2.38 -0.02 0.53 16 52 H 0.37 2.76 8.61 -74.06 -0.64 2.12 16 53 H 0.15 -0.80 8.06 -2.91 -0.02 -0.83 16 54 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 Total: 0.00 -25.01 463.93 5.63 -19.38 By element: Atomic # 1 Polarization: -16.24 SS G_CDS: 0.22 Total: -16.02 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 7.50 Total: 11.92 kcal Atomic # 7 Polarization: 3.19 SS G_CDS: -2.59 Total: 0.60 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -2.25 Total: -16.14 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.74 Total: 0.25 kcal Total: -25.01 5.63 -19.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_2989392.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.910 kcal (2) G-P(sol) polarization free energy of solvation -25.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds