Wall clock time and date at job start Sun Mar 7 2021 04:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86301 * 109.46963 * 2 1 4 4 C 1.86299 * 109.46911 * 240.00129 * 2 1 3 5 5 C 1.90000 * 109.47171 * 120.00102 * 2 1 3 6 6 C 3.07393 * 109.47248 * 119.99930 * 2 1 3 7 7 C 4.50598 * 109.47282 * 119.99966 * 2 1 3 8 8 C 1.39539 * 120.14033 * 272.63974 * 7 6 5 9 9 C 1.37972 * 119.85505 * 179.69734 * 8 7 6 10 10 C 1.38344 * 120.14183 * 0.58074 * 9 8 7 11 11 C 1.50696 * 119.85908 * 179.69430 * 10 9 8 12 12 N 1.46497 * 109.47163 * 270.02370 * 11 10 9 13 13 C 1.34782 * 120.00164 * 179.97438 * 12 11 10 14 14 O 1.21289 * 119.99676 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00147 * 180.02562 * 13 12 11 16 16 O 1.42905 * 109.47027 * 180.02562 * 15 13 12 17 17 C 1.35899 * 116.99838 * 180.02562 * 16 15 13 18 18 C 1.38733 * 120.05782 * 359.71794 * 17 16 15 19 19 C 1.38144 * 119.94077 * 179.74979 * 18 17 16 20 20 C 1.38260 * 120.05935 * 0.50698 * 19 18 17 21 21 C 1.50705 * 119.94727 * 179.74739 * 20 19 18 22 22 O 1.42899 * 109.47095 * 245.02298 * 21 20 19 23 23 Si 1.86296 * 109.46845 * 5.02182 * 21 20 19 24 24 H 1.48502 * 109.47362 * 60.00056 * 23 21 20 25 25 H 1.48495 * 109.47124 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47313 * 300.00222 * 23 21 20 27 27 C 1.38272 * 120.11130 * 359.76704 * 20 19 18 28 28 C 1.38142 * 120.05162 * 359.97438 * 27 20 19 29 29 C 1.38344 * 120.28621 * 359.71889 * 10 9 8 30 30 C 1.37976 * 120.14221 * 359.97438 * 29 10 9 31 31 H 1.08996 * 109.47221 * 299.99679 * 1 2 3 32 32 H 1.09002 * 109.47179 * 60.00030 * 1 2 3 33 33 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47144 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46890 * 300.00474 * 3 2 1 36 36 H 1.08993 * 109.47131 * 59.99659 * 3 2 1 37 37 H 1.09000 * 109.47172 * 299.99831 * 4 2 1 38 38 H 1.09002 * 109.47329 * 59.99933 * 4 2 1 39 39 H 1.09001 * 109.47058 * 179.97438 * 4 2 1 40 40 H 1.08006 * 120.07329 * 359.97438 * 8 7 6 41 41 H 1.07997 * 119.92872 * 180.29611 * 9 8 7 42 42 H 1.09003 * 109.46869 * 30.02121 * 11 10 9 43 43 H 1.08994 * 109.47064 * 150.02085 * 11 10 9 44 44 H 0.96993 * 120.00430 * 359.97438 * 12 11 10 45 45 H 1.09003 * 109.46982 * 299.99618 * 15 13 12 46 46 H 1.08994 * 109.47423 * 59.99871 * 15 13 12 47 47 H 1.07999 * 120.02431 * 0.02562 * 18 17 16 48 48 H 1.07997 * 119.96977 * 180.23353 * 19 18 17 49 49 H 1.08998 * 109.46933 * 125.02274 * 21 20 19 50 50 H 0.96699 * 114.00050 * 59.99372 * 22 21 20 51 51 H 1.07996 * 119.96949 * 179.97438 * 27 20 19 52 52 H 1.08000 * 120.02427 * 179.97438 * 28 27 20 53 53 H 1.07999 * 119.93193 * 180.02562 * 29 10 9 54 54 H 1.07995 * 120.07445 * 180.02562 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4964 -0.8957 1.5513 6 6 2.8877 -1.4490 2.5099 7 6 3.3651 -2.1241 3.6791 8 6 2.9851 -1.6829 4.9472 9 6 3.4435 -2.3415 6.0695 10 6 4.2878 -3.4297 5.9401 11 6 4.7902 -4.1401 7.1704 12 7 6.0458 -3.5266 7.6101 13 6 6.6822 -4.0005 8.6996 14 8 6.2150 -4.9346 9.3163 15 6 7.9735 -3.3691 9.1521 16 8 8.4499 -4.0429 10.3188 17 6 9.6132 -3.5934 10.8590 18 6 10.2853 -2.5297 10.2747 19 6 11.4649 -2.0714 10.8288 20 6 11.9811 -2.6786 11.9586 21 6 13.2711 -2.1803 12.5577 22 8 14.2703 -3.1961 12.4493 23 14 13.8324 -0.6570 11.6438 24 1 12.7940 0.3986 11.7563 25 1 15.1031 -0.1656 12.2344 26 1 14.0472 -0.9895 10.2125 27 6 11.3161 -3.7427 12.5395 28 6 10.1334 -4.2012 11.9924 29 6 4.6734 -3.8683 4.6859 30 6 4.2169 -3.2223 3.5554 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.5740 1.7565 -0.0005 35 1 2.1205 2.2703 -0.8900 36 1 2.1206 2.2703 0.8899 37 1 2.1206 -1.9059 -1.5212 38 1 2.1206 -0.3644 -2.4112 39 1 3.5740 -0.8778 -1.5214 40 1 2.3298 -0.8304 5.0497 41 1 3.1462 -2.0040 7.0514 42 1 4.0485 -4.0590 7.9651 43 1 4.9610 -5.1914 6.9387 44 1 6.4192 -2.7794 7.1171 45 1 8.7155 -3.4502 8.3577 46 1 7.8024 -2.3179 9.3836 47 1 9.8843 -2.0574 9.3901 48 1 11.9865 -1.2409 10.3766 49 1 13.1134 -1.9363 13.6082 50 1 14.4624 -3.4635 11.5401 51 1 11.7216 -4.2155 13.4217 52 1 9.6146 -5.0326 12.4462 53 1 5.3324 -4.7187 4.5915 54 1 4.5183 -3.5659 2.5769 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_2989410.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:01:29 Heat of formation + Delta-G solvation = -48.448967 kcal Electronic energy + Delta-G solvation = -31104.608517 eV Core-core repulsion = 26710.295565 eV Total energy + Delta-G solvation = -4394.312952 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 397.167 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.60466 -40.88686 -40.20865 -38.99962 -37.13361 -36.41152 -34.44672 -32.50161 -32.11665 -31.88624 -31.64252 -29.75041 -29.44787 -28.29535 -28.29226 -27.07267 -26.10379 -24.07199 -23.78366 -22.99167 -22.37890 -21.71501 -19.55825 -19.54645 -18.72440 -18.19824 -17.54258 -17.19499 -17.02272 -16.66504 -16.55355 -16.15425 -16.01522 -15.89805 -15.61049 -15.59153 -15.10355 -14.86795 -14.55478 -14.46730 -14.43240 -14.17423 -14.12432 -13.95737 -13.86858 -13.84555 -13.78682 -13.57287 -13.37074 -13.17367 -13.16922 -12.99506 -12.66100 -12.39744 -12.27614 -12.21661 -12.17797 -12.08801 -12.03989 -12.00757 -11.62582 -11.56640 -11.14947 -10.80460 -10.65232 -10.36753 -10.31885 -10.08069 -10.05532 -9.54316 -9.24845 -0.32463 0.25551 0.28265 0.29100 1.20827 1.37003 1.37993 1.38748 1.47123 1.53956 1.67682 1.69311 1.94000 2.29392 2.38067 2.46716 2.63624 2.64144 2.97750 3.46394 3.51666 3.58882 3.71480 3.74544 3.81914 3.82639 3.90219 3.93354 4.00479 4.04359 4.25049 4.27361 4.29000 4.41799 4.56840 4.57975 4.59606 4.71578 4.81123 4.82779 4.83079 4.85948 4.88720 4.88908 4.91560 4.95203 4.95754 5.13808 5.16357 5.19301 5.23044 5.37580 5.41947 5.48786 5.57811 5.67288 5.67655 5.68517 5.78931 6.21852 6.39302 6.55887 6.73739 7.03462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.200 2.800 3 C -0.461 4.461 4 C -0.462 4.462 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.109 4.109 9 C -0.094 4.094 10 C -0.099 4.099 11 C 0.166 3.834 12 N -0.706 5.706 13 C 0.515 3.485 14 O -0.570 6.570 15 C 0.037 3.963 16 O -0.318 6.318 17 C 0.120 3.880 18 C -0.202 4.202 19 C -0.090 4.090 20 C -0.160 4.160 21 C -0.077 4.077 22 O -0.555 6.555 23 Si 0.982 3.018 24 H -0.256 1.256 25 H -0.279 1.279 26 H -0.248 1.248 27 C -0.055 4.055 28 C -0.164 4.164 29 C -0.094 4.094 30 C -0.109 4.109 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.419 0.581 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.160 0.840 48 H 0.140 0.860 49 H 0.121 0.879 50 H 0.388 0.612 51 H 0.141 0.859 52 H 0.130 0.870 53 H 0.147 0.853 54 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 6.035 -6.702 9.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.382 2.618 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.127 4.127 9 C -0.112 4.112 10 C -0.100 4.100 11 C 0.043 3.957 12 N -0.361 5.361 13 C 0.301 3.699 14 O -0.448 6.448 15 C -0.041 4.041 16 O -0.231 6.231 17 C 0.075 3.925 18 C -0.221 4.221 19 C -0.108 4.108 20 C -0.161 4.161 21 C -0.188 4.188 22 O -0.362 6.362 23 Si 0.807 3.193 24 H -0.180 1.180 25 H -0.204 1.204 26 H -0.171 1.171 27 C -0.073 4.073 28 C -0.183 4.183 29 C -0.112 4.112 30 C -0.127 4.127 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.165 0.835 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.257 0.743 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.178 0.822 48 H 0.157 0.843 49 H 0.139 0.861 50 H 0.237 0.763 51 H 0.159 0.841 52 H 0.148 0.852 53 H 0.165 0.835 54 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.061 5.914 -5.867 8.331 hybrid contribution -0.108 -0.430 -0.218 0.494 sum -0.169 5.484 -6.085 8.193 Atomic orbital electron populations 1.26239 1.20606 1.04846 1.05369 0.76296 0.64870 0.63477 0.57183 1.26211 1.06610 1.18665 1.05389 1.26221 1.06639 1.08489 1.15609 1.37470 0.99217 1.00466 1.05075 1.21599 1.01099 1.00100 0.96327 1.16532 0.98450 0.95847 0.90056 1.21391 0.99938 1.00350 0.90981 1.21218 0.96330 0.94477 0.99212 1.19890 0.99045 0.96909 0.94129 1.20152 0.85446 0.96660 0.93439 1.45743 1.24486 1.37167 1.28684 1.20500 0.85877 0.83101 0.80383 1.90778 1.67973 1.29999 1.56041 1.22717 0.94466 0.98153 0.88737 1.86127 1.36984 1.57242 1.42781 1.19212 0.85528 0.94086 0.93669 1.21448 0.98000 0.98950 1.03658 1.21080 0.95632 0.99143 0.94897 1.20375 0.98983 0.98958 0.97768 1.25000 0.86219 1.00027 1.07510 1.86488 1.57469 1.58302 1.33945 0.85230 0.79265 0.75799 0.79040 1.17955 1.20437 1.17119 1.20958 0.92434 0.94816 0.99100 1.20671 0.98106 1.02949 0.96541 1.21220 0.99161 0.99860 0.90988 1.21389 0.96699 0.94610 0.99960 0.91211 0.89261 0.91329 0.91168 0.89261 0.91180 0.91257 0.89270 0.91132 0.84859 0.83521 0.90486 0.90478 0.74343 0.85721 0.85741 0.82242 0.84281 0.86121 0.76270 0.84142 0.85240 0.83510 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.36 8.65 113.37 0.98 3.34 16 2 Si 1.20 -7.53 14.26 68.60 0.98 -6.55 16 3 C -0.46 2.58 8.65 113.37 0.98 3.56 16 4 C -0.46 2.50 8.65 113.37 0.98 3.48 16 5 C -0.39 -1.26 12.14 74.32 0.90 -0.35 16 6 C -0.19 -1.33 13.24 30.02 0.40 -0.94 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 8 C -0.11 -0.18 9.75 22.52 0.22 0.04 16 9 C -0.09 0.17 9.68 22.23 0.22 0.38 16 10 C -0.10 0.23 5.25 -19.82 -0.10 0.13 16 11 C 0.17 -0.30 5.79 85.63 0.50 0.19 16 12 N -0.71 2.78 5.55 -466.80 -2.59 0.19 16 13 C 0.52 1.25 7.91 87.65 0.69 1.94 16 14 O -0.57 -7.89 16.50 15.98 0.26 -7.62 16 15 C 0.04 -0.11 5.22 71.23 0.37 0.26 16 16 O -0.32 -1.89 9.67 -73.38 -0.71 -2.60 16 17 C 0.12 0.44 6.69 22.51 0.15 0.59 16 18 C -0.20 0.29 9.04 22.37 0.20 0.49 16 19 C -0.09 0.12 8.66 22.25 0.19 0.31 16 20 C -0.16 -0.05 5.35 -19.85 -0.11 -0.16 16 21 C -0.08 0.11 2.80 71.24 0.20 0.31 16 22 O -0.55 -0.17 12.83 -148.98 -1.91 -2.08 16 23 Si 0.98 -2.43 25.13 68.60 1.72 -0.71 16 24 H -0.26 0.44 7.11 99.48 0.71 1.15 16 25 H -0.28 -0.46 7.11 99.48 0.71 0.24 16 26 H -0.25 0.84 7.04 99.48 0.70 1.54 16 27 C -0.06 -0.12 9.68 22.25 0.22 0.09 16 28 C -0.16 -0.74 9.99 22.37 0.22 -0.52 16 29 C -0.09 0.17 9.68 22.23 0.22 0.39 16 30 C -0.11 -0.18 9.75 22.52 0.22 0.04 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.09 -0.67 7.96 -2.39 -0.02 -0.69 16 36 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 37 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 38 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 39 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 40 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 41 H 0.15 -0.78 8.06 -2.91 -0.02 -0.81 16 42 H 0.08 -0.02 8.08 -2.39 -0.02 -0.04 16 43 H 0.08 -0.02 8.08 -2.39 -0.02 -0.04 16 44 H 0.42 -4.16 8.46 -92.71 -0.78 -4.94 16 45 H 0.13 -1.15 7.65 -2.39 -0.02 -1.17 16 46 H 0.12 -1.14 7.67 -2.39 -0.02 -1.16 16 47 H 0.16 -1.32 6.30 -2.91 -0.02 -1.33 16 48 H 0.14 -0.69 4.86 -2.91 -0.01 -0.71 16 49 H 0.12 -0.32 7.96 -2.39 -0.02 -0.34 16 50 H 0.39 -2.38 8.70 -74.06 -0.64 -3.02 16 51 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 52 H 0.13 0.60 8.06 -2.91 -0.02 0.58 16 53 H 0.15 -0.79 8.06 -2.91 -0.02 -0.81 16 54 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 Total: 0.00 -26.37 465.29 5.53 -20.85 By element: Atomic # 1 Polarization: -15.15 SS G_CDS: 0.25 Total: -14.90 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 7.52 Total: 13.42 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -2.59 Total: 0.19 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -2.36 Total: -12.30 kcal Atomic # 14 Polarization: -9.96 SS G_CDS: 2.70 Total: -7.26 kcal Total: -26.37 5.53 -20.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_2989410.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.600 kcal (2) G-P(sol) polarization free energy of solvation -26.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds