Wall clock time and date at job start Sun Mar 7 2021 04:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86301 * 109.46963 * 2 1 4 4 C 1.86299 * 109.46911 * 240.00129 * 2 1 3 5 5 C 1.90000 * 109.47171 * 120.00102 * 2 1 3 6 6 C 3.07393 * 109.47248 * 119.99930 * 2 1 3 7 7 C 4.50598 * 109.47282 * 119.99966 * 2 1 3 8 8 C 1.39539 * 120.14033 * 272.63974 * 7 6 5 9 9 C 1.37972 * 119.85505 * 179.69734 * 8 7 6 10 10 C 1.38344 * 120.14183 * 0.58074 * 9 8 7 11 11 C 1.50696 * 119.85908 * 179.69430 * 10 9 8 12 12 N 1.46497 * 109.47163 * 270.02370 * 11 10 9 13 13 C 1.34782 * 120.00164 * 179.97438 * 12 11 10 14 14 O 1.21289 * 119.99676 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00147 * 180.02562 * 13 12 11 16 16 F 1.39899 * 109.47076 * 299.99397 * 15 13 12 17 17 F 1.39891 * 109.47385 * 59.99996 * 15 13 12 18 18 O 1.42905 * 109.47027 * 180.02562 * 15 13 12 19 19 C 1.35899 * 116.99838 * 180.02562 * 18 15 13 20 20 C 1.38733 * 120.05782 * 359.71794 * 19 18 15 21 21 C 1.38144 * 119.94077 * 179.74979 * 20 19 18 22 22 C 1.38260 * 120.05935 * 0.50698 * 21 20 19 23 23 C 1.50705 * 119.94727 * 179.74739 * 22 21 20 24 24 O 1.42899 * 109.47095 * 245.02298 * 23 22 21 25 25 Si 1.86296 * 109.46845 * 5.02182 * 23 22 21 26 26 H 1.48502 * 109.47362 * 60.00056 * 25 23 22 27 27 H 1.48495 * 109.47124 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47313 * 300.00222 * 25 23 22 29 29 C 1.38272 * 120.11130 * 359.76704 * 22 21 20 30 30 C 1.38142 * 120.05162 * 359.97438 * 29 22 21 31 31 C 1.38344 * 120.28621 * 359.71889 * 10 9 8 32 32 C 1.37976 * 120.14221 * 359.97438 * 31 10 9 33 33 H 1.08996 * 109.47221 * 299.99679 * 1 2 3 34 34 H 1.09002 * 109.47179 * 60.00030 * 1 2 3 35 35 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 36 36 H 1.08998 * 109.47144 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.46890 * 300.00474 * 3 2 1 38 38 H 1.08993 * 109.47131 * 59.99659 * 3 2 1 39 39 H 1.09000 * 109.47172 * 299.99831 * 4 2 1 40 40 H 1.09002 * 109.47329 * 59.99933 * 4 2 1 41 41 H 1.09001 * 109.47058 * 179.97438 * 4 2 1 42 42 H 1.08006 * 120.07329 * 359.97438 * 8 7 6 43 43 H 1.07997 * 119.92872 * 180.29611 * 9 8 7 44 44 H 1.09003 * 109.46869 * 30.02121 * 11 10 9 45 45 H 1.08994 * 109.47064 * 150.02085 * 11 10 9 46 46 H 0.96993 * 120.00430 * 359.97438 * 12 11 10 47 47 H 1.07999 * 120.02431 * 0.02562 * 20 19 18 48 48 H 1.07997 * 119.96977 * 180.23353 * 21 20 19 49 49 H 1.08998 * 109.46933 * 125.02274 * 23 22 21 50 50 H 0.96699 * 114.00050 * 59.99372 * 24 23 22 51 51 H 1.07996 * 119.96949 * 179.97438 * 29 22 21 52 52 H 1.08000 * 120.02427 * 179.97438 * 30 29 22 53 53 H 1.07999 * 119.93193 * 180.02562 * 31 10 9 54 54 H 1.07995 * 120.07445 * 180.02562 * 32 31 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4964 -0.8957 1.5513 6 6 2.8877 -1.4490 2.5099 7 6 3.3651 -2.1241 3.6791 8 6 2.9851 -1.6829 4.9472 9 6 3.4435 -2.3415 6.0695 10 6 4.2878 -3.4297 5.9401 11 6 4.7902 -4.1401 7.1704 12 7 6.0458 -3.5266 7.6101 13 6 6.6822 -4.0005 8.6996 14 8 6.2150 -4.9346 9.3163 15 6 7.9735 -3.3691 9.1521 16 9 8.9258 -3.4732 8.1326 17 9 7.7539 -2.0199 9.4492 18 8 8.4499 -4.0429 10.3188 19 6 9.6132 -3.5934 10.8590 20 6 10.2853 -2.5297 10.2747 21 6 11.4649 -2.0714 10.8288 22 6 11.9811 -2.6786 11.9586 23 6 13.2711 -2.1803 12.5577 24 8 14.2703 -3.1961 12.4493 25 14 13.8324 -0.6570 11.6438 26 1 12.7940 0.3986 11.7563 27 1 15.1031 -0.1656 12.2344 28 1 14.0472 -0.9895 10.2125 29 6 11.3161 -3.7427 12.5395 30 6 10.1334 -4.2012 11.9924 31 6 4.6734 -3.8683 4.6859 32 6 4.2169 -3.2223 3.5554 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 3.5740 1.7565 -0.0005 37 1 2.1205 2.2703 -0.8900 38 1 2.1206 2.2703 0.8899 39 1 2.1206 -1.9059 -1.5212 40 1 2.1206 -0.3644 -2.4112 41 1 3.5740 -0.8778 -1.5214 42 1 2.3298 -0.8304 5.0497 43 1 3.1462 -2.0040 7.0514 44 1 4.0485 -4.0590 7.9651 45 1 4.9610 -5.1914 6.9387 46 1 6.4192 -2.7794 7.1171 47 1 9.8843 -2.0574 9.3901 48 1 11.9865 -1.2409 10.3766 49 1 13.1134 -1.9363 13.6082 50 1 14.4624 -3.4635 11.5401 51 1 11.7216 -4.2155 13.4217 52 1 9.6146 -5.0326 12.4462 53 1 5.3324 -4.7187 4.5915 54 1 4.5183 -3.5659 2.5769 RHF calculation, no. of doubly occupied orbitals= 77 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_4549640.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:09:44 Heat of formation + Delta-G solvation = -138.913365 kcal Electronic energy + Delta-G solvation = -37292.728966 eV Core-core repulsion = 31955.585232 eV Total energy + Delta-G solvation = -5337.143734 eV No. of doubly occupied orbitals = 77 Molecular weight (most abundant/longest-lived isotopes) = 433.148 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -50.94148 -48.91451 -41.51457 -41.24210 -40.36518 -39.29860 -37.27422 -36.71171 -34.55879 -32.48994 -32.13485 -32.13042 -31.79117 -29.50907 -29.33610 -28.29865 -28.29768 -27.25158 -26.12308 -24.52853 -23.80959 -23.15125 -22.71478 -22.37405 -20.67334 -20.08256 -19.74502 -19.56439 -18.63299 -17.74142 -17.47843 -17.15429 -16.94915 -16.88670 -16.34476 -16.18468 -16.08302 -15.97156 -15.88421 -15.74918 -15.49632 -15.39352 -15.26459 -15.15734 -14.70700 -14.57197 -14.50431 -14.40447 -14.26660 -14.21519 -14.13251 -13.95801 -13.86509 -13.85566 -13.65915 -13.17691 -13.17617 -13.05271 -12.99937 -12.72870 -12.43051 -12.42351 -12.27423 -12.24272 -12.13219 -12.02126 -11.78158 -11.63668 -11.59897 -10.82330 -10.66986 -10.65750 -10.43472 -10.21009 -10.09737 -9.61391 -9.58401 -0.39840 -0.00521 0.12455 0.26923 0.47634 0.58539 1.16350 1.36154 1.43497 1.50719 1.54235 1.67099 1.68510 1.90403 1.97847 2.31602 2.37369 2.43564 2.46159 2.76254 2.98045 3.17852 3.37145 3.47334 3.51553 3.64119 3.71881 3.74017 3.80005 3.88581 4.05146 4.18754 4.20282 4.25953 4.39038 4.46719 4.54674 4.61344 4.73108 4.77704 4.80741 4.82451 4.82615 4.85494 4.88366 4.88429 4.88450 4.91044 4.94144 5.01214 5.14933 5.32583 5.35179 5.36681 5.38435 5.57422 5.67016 5.67126 5.72997 5.77853 5.81842 6.35223 6.54754 6.69694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.200 2.800 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.390 4.390 6 C -0.192 4.192 7 C -0.006 4.006 8 C -0.110 4.110 9 C -0.091 4.091 10 C -0.106 4.106 11 C 0.163 3.837 12 N -0.683 5.683 13 C 0.519 3.481 14 O -0.503 6.503 15 C 0.434 3.566 16 F -0.172 7.172 17 F -0.172 7.172 18 O -0.303 6.303 19 C 0.085 3.915 20 C -0.195 4.195 21 C -0.092 4.092 22 C -0.141 4.141 23 C -0.072 4.072 24 O -0.550 6.550 25 Si 0.973 3.027 26 H -0.258 1.258 27 H -0.272 1.272 28 H -0.252 1.252 29 C -0.052 4.052 30 C -0.133 4.133 31 C -0.091 4.091 32 C -0.110 4.110 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.134 0.866 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.421 0.579 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.131 0.869 50 H 0.389 0.611 51 H 0.158 0.842 52 H 0.148 0.852 53 H 0.150 0.850 54 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 3.272 -4.856 5.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.382 2.618 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.421 4.421 6 C -0.192 4.192 7 C -0.006 4.006 8 C -0.128 4.128 9 C -0.110 4.110 10 C -0.107 4.107 11 C 0.042 3.958 12 N -0.337 5.337 13 C 0.297 3.703 14 O -0.377 6.377 15 C 0.356 3.644 16 F -0.154 7.154 17 F -0.154 7.154 18 O -0.220 6.220 19 C 0.042 3.958 20 C -0.214 4.214 21 C -0.109 4.109 22 C -0.141 4.141 23 C -0.183 4.183 24 O -0.357 6.357 25 Si 0.798 3.202 26 H -0.182 1.182 27 H -0.197 1.197 28 H -0.176 1.176 29 C -0.070 4.070 30 C -0.152 4.152 31 C -0.109 4.109 32 C -0.128 4.128 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.259 0.741 47 H 0.155 0.845 48 H 0.158 0.842 49 H 0.148 0.852 50 H 0.238 0.762 51 H 0.175 0.825 52 H 0.166 0.834 53 H 0.168 0.832 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.409 3.179 -4.042 5.331 hybrid contribution 0.145 0.048 -0.532 0.553 sum -1.263 3.227 -4.573 5.738 Atomic orbital electron populations 1.26229 1.20498 1.04886 1.05384 0.76301 0.64936 0.63413 0.57189 1.26222 1.06578 1.18764 1.05387 1.26220 1.06616 1.08517 1.15603 1.37476 0.99151 1.00398 1.05077 1.21598 1.01135 1.00141 0.96341 1.16559 0.98218 0.95714 0.90084 1.21404 1.00043 1.00396 0.90980 1.21263 0.96094 0.94226 0.99372 1.19839 0.99546 0.97303 0.93997 1.20480 0.83849 0.97276 0.94205 1.45870 1.24706 1.36368 1.26757 1.19309 0.83822 0.84443 0.82763 1.90870 1.64869 1.27284 1.54643 1.21791 0.87045 0.77000 0.78572 1.93193 1.66547 1.95530 1.60083 1.93193 1.94730 1.34481 1.92959 1.86645 1.38835 1.56190 1.40300 1.19247 0.85308 0.95806 0.95409 1.21559 0.98523 0.98488 1.02811 1.21042 0.95101 0.99454 0.95335 1.20515 0.98795 0.98204 0.96626 1.24944 0.85778 0.99777 1.07824 1.86498 1.57193 1.58014 1.34007 0.85348 0.79626 0.76192 0.79050 1.18218 1.19709 1.17567 1.21113 0.92021 0.94508 0.99384 1.20764 0.97625 1.02204 0.94584 1.21265 0.98867 0.99864 0.90951 1.21402 0.96725 0.94643 1.00049 0.91196 0.89253 0.91268 0.91237 0.89252 0.91197 0.91202 0.89262 0.91175 0.84796 0.83204 0.88654 0.88645 0.74144 0.84492 0.84224 0.85157 0.76173 0.82458 0.83380 0.83192 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.36 8.65 113.37 0.98 3.34 16 2 Si 1.20 -7.35 14.26 68.60 0.98 -6.37 16 3 C -0.46 2.42 8.65 113.37 0.98 3.40 16 4 C -0.46 2.44 8.65 113.37 0.98 3.42 16 5 C -0.39 -1.29 12.14 74.32 0.90 -0.39 16 6 C -0.19 -1.34 13.24 30.02 0.40 -0.95 16 7 C -0.01 -0.03 5.72 -21.41 -0.12 -0.15 16 8 C -0.11 -0.16 9.75 22.52 0.22 0.06 16 9 C -0.09 0.22 9.68 22.23 0.22 0.43 16 10 C -0.11 0.34 5.25 -19.82 -0.10 0.23 16 11 C 0.16 -0.61 5.79 85.63 0.50 -0.11 16 12 N -0.68 1.67 5.55 -466.80 -2.59 -0.92 16 13 C 0.52 2.11 7.34 87.65 0.64 2.75 16 14 O -0.50 -5.42 16.50 15.98 0.26 -5.15 16 15 C 0.43 1.98 2.05 71.23 0.15 2.13 16 16 F -0.17 -0.55 15.28 44.97 0.69 0.14 16 17 F -0.17 -0.57 15.31 44.97 0.69 0.12 16 18 O -0.30 -2.59 9.60 -73.38 -0.70 -3.30 16 19 C 0.08 0.55 6.48 22.51 0.15 0.70 16 20 C -0.20 -0.86 8.26 22.37 0.18 -0.68 16 21 C -0.09 -0.16 8.66 22.25 0.19 0.04 16 22 C -0.14 -0.06 5.35 -19.85 -0.11 -0.17 16 23 C -0.07 0.15 2.80 71.24 0.20 0.35 16 24 O -0.55 0.45 12.83 -148.98 -1.91 -1.46 16 25 Si 0.97 -1.68 25.13 68.60 1.72 0.04 16 26 H -0.26 0.08 7.11 99.48 0.71 0.79 16 27 H -0.27 -0.45 7.11 99.48 0.71 0.25 16 28 H -0.25 0.44 7.04 99.48 0.70 1.14 16 29 C -0.05 -0.04 9.68 22.25 0.22 0.18 16 30 C -0.13 -0.47 9.99 22.37 0.22 -0.25 16 31 C -0.09 0.22 9.68 22.23 0.22 0.43 16 32 C -0.11 -0.16 9.75 22.52 0.22 0.06 16 33 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 34 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 35 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 36 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 37 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 38 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 39 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 41 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 42 H 0.13 -0.03 8.06 -2.91 -0.02 -0.06 16 43 H 0.15 -0.94 8.06 -2.91 -0.02 -0.96 16 44 H 0.10 -0.37 8.08 -2.39 -0.02 -0.39 16 45 H 0.10 -0.38 8.08 -2.39 -0.02 -0.40 16 46 H 0.42 -2.55 8.46 -92.71 -0.78 -3.33 16 47 H 0.14 0.42 5.10 -2.91 -0.01 0.40 16 48 H 0.14 -0.21 4.86 -2.91 -0.01 -0.23 16 49 H 0.13 -0.56 7.96 -2.39 -0.02 -0.58 16 50 H 0.39 -2.65 8.70 -74.06 -0.64 -3.30 16 51 H 0.16 -0.45 8.06 -2.91 -0.02 -0.48 16 52 H 0.15 0.19 8.06 -2.91 -0.02 0.17 16 53 H 0.15 -0.95 8.06 -2.91 -0.02 -0.97 16 54 H 0.13 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -20.59 474.56 6.65 -13.94 By element: Atomic # 1 Polarization: -12.17 SS G_CDS: 0.29 Total: -11.88 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 7.23 Total: 14.83 kcal Atomic # 7 Polarization: 1.67 SS G_CDS: -2.59 Total: -0.92 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -2.35 Total: -9.91 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 1.38 Total: 0.26 kcal Atomic # 14 Polarization: -9.03 SS G_CDS: 2.70 Total: -6.33 kcal Total: -20.59 6.65 -13.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_4549640.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.969 kcal (2) G-P(sol) polarization free energy of solvation -20.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds