Wall clock time and date at job start Sun Mar 7 2021 04:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86299 * 109.47220 * 2 1 4 4 C 1.86298 * 109.46875 * 240.00164 * 2 1 3 5 5 C 1.89997 * 109.47088 * 120.00153 * 2 1 3 6 6 C 3.07402 * 109.47181 * 120.00180 * 2 1 3 7 7 C 4.50599 * 109.47175 * 120.00088 * 2 1 3 8 8 C 1.39530 * 120.14262 * 241.80752 * 7 6 5 9 9 C 1.37972 * 119.85765 * 180.02562 * 8 7 6 10 10 C 1.38340 * 120.14221 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.85863 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.47174 * 89.99918 * 11 10 9 13 13 C 1.34777 * 120.00271 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 11 16 16 O 1.42898 * 109.47171 * 180.02562 * 15 13 12 17 17 C 1.35900 * 117.00172 * 179.97438 * 16 15 13 18 18 C 1.38710 * 120.05544 * 359.72769 * 17 16 15 19 19 C 1.38159 * 119.94311 * 179.72143 * 18 17 16 20 20 C 1.38250 * 120.05742 * 0.57011 * 19 18 17 21 21 C 1.38280 * 120.10833 * 359.68104 * 20 19 18 22 22 C 1.50697 * 119.97205 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47393 * 245.02079 * 22 21 20 24 24 Si 1.86306 * 109.47148 * 5.02162 * 22 21 20 25 25 H 1.48504 * 109.46673 * 59.99962 * 24 22 21 26 26 H 1.48495 * 109.47180 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.46932 * 300.00295 * 24 22 21 28 28 C 1.38129 * 120.05716 * 0.04353 * 21 20 19 29 29 C 1.38347 * 120.28688 * 0.25678 * 10 9 8 30 30 C 1.37977 * 120.13942 * 359.44261 * 29 10 9 31 31 H 1.09007 * 109.46904 * 300.00213 * 1 2 3 32 32 H 1.09003 * 109.47378 * 59.99759 * 1 2 3 33 33 H 1.08993 * 109.47157 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47459 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47142 * 300.00386 * 3 2 1 36 36 H 1.09007 * 109.47356 * 60.00063 * 3 2 1 37 37 H 1.09002 * 109.46927 * 299.99805 * 4 2 1 38 38 H 1.09000 * 109.47480 * 60.00149 * 4 2 1 39 39 H 1.09000 * 109.46912 * 180.02562 * 4 2 1 40 40 H 1.08001 * 120.06953 * 0.02562 * 8 7 6 41 41 H 1.07999 * 119.92712 * 180.02562 * 9 8 7 42 42 H 1.09002 * 109.47060 * 330.00047 * 11 10 9 43 43 H 1.09001 * 109.47380 * 209.99960 * 11 10 9 44 44 H 0.97005 * 120.00266 * 0.02562 * 12 11 10 45 45 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 46 46 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 47 47 H 1.08006 * 120.02494 * 359.97438 * 18 17 16 48 48 H 1.08006 * 119.97038 * 180.27439 * 19 18 17 49 49 H 1.08000 * 119.94133 * 179.70045 * 20 19 18 50 50 H 1.09005 * 109.47122 * 125.02014 * 22 21 20 51 51 H 0.96696 * 113.99487 * 59.99932 * 23 22 21 52 52 H 1.07998 * 120.02418 * 180.02562 * 28 21 20 53 53 H 1.07994 * 119.92984 * 179.70663 * 29 10 9 54 54 H 1.07997 * 120.07137 * 180.24992 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4963 -0.8957 1.5513 6 6 2.8877 -1.4492 2.5099 7 6 3.3650 -2.1242 3.6791 8 6 3.5627 -1.4164 4.8652 9 6 4.0233 -2.0725 5.9880 10 6 4.2896 -3.4292 5.9396 11 6 4.7930 -4.1394 7.1697 12 7 3.6550 -4.6384 7.9456 13 6 3.8656 -5.3112 9.0943 14 8 4.9973 -5.5032 9.4858 15 6 2.6949 -5.8250 9.8921 16 8 3.1723 -6.4984 11.0587 17 6 2.2377 -7.0248 11.8931 18 6 0.8889 -6.8910 11.5982 19 6 -0.0591 -7.4321 12.4452 20 6 0.3352 -8.0961 13.5918 21 6 1.6790 -8.2263 13.8907 22 6 2.1054 -8.9512 15.1412 23 8 2.7491 -8.0338 16.0277 24 14 0.6082 -9.6776 15.9790 25 1 -0.0607 -10.6311 15.0576 26 1 1.0284 -10.3925 17.2108 27 1 -0.3363 -8.5887 16.3357 28 6 2.6309 -7.6921 13.0443 29 6 4.1013 -4.1357 4.7651 30 6 3.6352 -3.4925 3.6369 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.5741 1.7565 -0.0005 35 1 2.1206 2.2703 -0.8900 36 1 2.1207 2.2703 0.8900 37 1 2.1206 -1.9059 -1.5211 38 1 2.1206 -0.3644 -2.4112 39 1 3.5739 -0.8786 -1.5209 40 1 3.3555 -0.3571 4.9041 41 1 4.1763 -1.5258 6.9068 42 1 5.3716 -3.4450 7.7790 43 1 5.4253 -4.9762 6.8730 44 1 2.7498 -4.4852 7.6323 45 1 2.1165 -6.5193 9.2826 46 1 2.0625 -4.9884 10.1892 47 1 0.5802 -6.3679 10.7052 48 1 -1.1093 -7.3321 12.2137 49 1 -0.4077 -8.5142 14.2551 50 1 2.7987 -9.7506 14.8792 51 1 2.1896 -7.2948 16.3030 52 1 3.6803 -7.7944 13.2780 53 1 4.3155 -5.1937 4.7325 54 1 3.4848 -4.0459 2.7218 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_4860298.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:10:27 Heat of formation + Delta-G solvation = -48.444472 kcal Electronic energy + Delta-G solvation = -31117.838107 eV Core-core repulsion = 26723.525350 eV Total energy + Delta-G solvation = -4394.312757 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 397.167 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.60551 -40.89066 -40.21217 -38.97227 -37.24724 -36.41604 -34.44596 -32.49899 -32.11545 -32.11288 -31.39999 -29.54136 -29.40077 -28.29224 -28.28851 -27.12364 -26.57350 -23.78230 -23.71938 -23.14955 -22.49894 -21.59807 -19.55092 -19.34327 -18.75601 -17.97296 -17.54479 -17.33634 -17.08475 -16.78394 -16.66426 -16.18316 -16.16428 -15.99347 -15.59442 -15.52085 -14.96211 -14.92812 -14.55334 -14.46095 -14.41464 -14.18033 -14.12561 -14.02640 -13.94927 -13.86012 -13.84394 -13.39355 -13.17234 -13.16626 -13.00429 -12.99065 -12.66530 -12.59736 -12.39617 -12.22211 -12.19338 -12.07535 -12.00607 -11.96275 -11.62266 -11.54781 -11.15034 -10.80080 -10.65019 -10.46622 -10.32175 -10.07917 -9.94447 -9.54110 -9.30868 -0.32304 0.18929 0.28416 0.36173 1.15000 1.37144 1.38582 1.39173 1.47794 1.54644 1.68132 1.69622 1.92586 2.29883 2.38212 2.47040 2.63437 2.65123 2.97905 3.46499 3.51045 3.55467 3.68760 3.74589 3.81872 3.83795 3.90460 3.98308 4.04428 4.07624 4.20415 4.25002 4.29147 4.36122 4.54699 4.57995 4.58427 4.66688 4.81148 4.83149 4.83270 4.86194 4.89043 4.89218 4.91932 4.95893 4.96872 5.15622 5.19196 5.22043 5.33612 5.37724 5.41996 5.42106 5.58104 5.66303 5.67571 5.67969 5.79035 6.23161 6.40081 6.56147 6.68606 7.03506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.200 2.800 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.109 4.109 9 C -0.094 4.094 10 C -0.099 4.099 11 C 0.166 3.834 12 N -0.706 5.706 13 C 0.515 3.485 14 O -0.570 6.570 15 C 0.038 3.962 16 O -0.321 6.321 17 C 0.115 3.885 18 C -0.203 4.203 19 C -0.072 4.072 20 C -0.171 4.171 21 C -0.083 4.083 22 C -0.090 4.090 23 O -0.554 6.554 24 Si 0.996 3.004 25 H -0.254 1.254 26 H -0.278 1.278 27 H -0.245 1.245 28 C -0.144 4.144 29 C -0.094 4.094 30 C -0.109 4.109 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.419 0.581 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.160 0.840 48 H 0.158 0.842 49 H 0.137 0.863 50 H 0.119 0.881 51 H 0.389 0.611 52 H 0.119 0.881 53 H 0.147 0.853 54 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 2.978 -5.386 10.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.382 2.618 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.422 4.422 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.127 4.127 9 C -0.112 4.112 10 C -0.100 4.100 11 C 0.043 3.957 12 N -0.360 5.360 13 C 0.301 3.699 14 O -0.449 6.449 15 C -0.039 4.039 16 O -0.234 6.234 17 C 0.070 3.930 18 C -0.221 4.221 19 C -0.090 4.090 20 C -0.189 4.189 21 C -0.084 4.084 22 C -0.200 4.200 23 O -0.362 6.362 24 Si 0.819 3.181 25 H -0.178 1.178 26 H -0.203 1.203 27 H -0.168 1.168 28 C -0.163 4.163 29 C -0.112 4.112 30 C -0.127 4.127 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.257 0.743 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.177 0.823 48 H 0.176 0.824 49 H 0.154 0.846 50 H 0.136 0.864 51 H 0.238 0.762 52 H 0.137 0.863 53 H 0.165 0.835 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.433 2.010 -4.639 8.990 hybrid contribution 0.081 0.483 -0.136 0.508 sum -7.353 2.493 -4.774 9.114 Atomic orbital electron populations 1.26210 1.20311 1.04942 1.05391 0.76294 0.65037 0.63346 0.57135 1.26233 1.06541 1.18853 1.05394 1.26230 1.06543 1.08567 1.15674 1.37477 0.99170 1.00536 1.05033 1.21599 1.01104 1.00081 0.96348 1.16523 1.00274 0.93455 0.90570 1.21388 0.99030 1.00567 0.91674 1.21215 0.97386 0.93902 0.98715 1.19886 1.01246 0.94099 0.94757 1.20154 0.88147 0.98215 0.89195 1.45739 1.11271 1.56508 1.22524 1.20518 0.90124 0.77867 0.81405 1.90777 1.26076 1.57955 1.70057 1.22707 0.94915 0.99817 0.86489 1.86122 1.34031 1.69420 1.33851 1.19202 0.88554 0.94630 0.90620 1.21608 0.90791 1.06034 1.03707 1.21281 1.00858 0.94270 0.92573 1.21239 0.94836 1.03033 0.99746 1.20207 0.93210 0.98277 0.96666 1.25246 1.09141 0.95723 0.89864 1.86502 1.44159 1.40671 1.64830 0.85031 0.74814 0.79780 0.78479 1.17755 1.20321 1.16839 1.20328 1.00483 1.01804 0.93699 1.21218 0.97551 1.00958 0.91495 1.21390 0.98807 0.92879 0.99581 0.91171 0.89255 0.91169 0.91322 0.89272 0.91151 0.91149 0.89268 0.91318 0.84845 0.83534 0.90519 0.90517 0.74315 0.85713 0.85729 0.82259 0.82390 0.84571 0.86366 0.76170 0.86306 0.83537 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.59 8.65 113.37 0.98 3.57 16 2 Si 1.20 -7.51 14.26 68.60 0.98 -6.53 16 3 C -0.46 2.41 8.65 113.37 0.98 3.39 16 4 C -0.46 2.42 8.65 113.37 0.98 3.40 16 5 C -0.39 -1.27 12.14 74.32 0.90 -0.37 16 6 C -0.19 -1.34 13.24 30.01 0.40 -0.95 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 8 C -0.11 -0.19 9.75 22.52 0.22 0.03 16 9 C -0.09 0.15 9.68 22.23 0.22 0.36 16 10 C -0.10 0.21 5.25 -19.81 -0.10 0.10 16 11 C 0.17 -0.23 5.79 85.63 0.50 0.26 16 12 N -0.71 2.46 5.55 -466.79 -2.59 -0.13 16 13 C 0.51 1.59 7.91 87.66 0.69 2.28 16 14 O -0.57 -8.40 16.50 16.01 0.26 -8.14 16 15 C 0.04 -0.09 5.22 71.24 0.37 0.28 16 16 O -0.32 -2.28 9.67 -73.39 -0.71 -2.99 16 17 C 0.11 0.53 6.69 22.50 0.15 0.68 16 18 C -0.20 0.35 9.04 22.36 0.20 0.56 16 19 C -0.07 0.19 10.04 22.25 0.22 0.42 16 20 C -0.17 0.06 8.67 22.28 0.19 0.25 16 21 C -0.08 -0.22 5.35 -19.88 -0.11 -0.33 16 22 C -0.09 -0.10 2.80 71.23 0.20 0.10 16 23 O -0.55 -1.72 12.83 -148.98 -1.91 -3.63 16 24 Si 1.00 -1.22 25.14 68.60 1.72 0.51 16 25 H -0.25 0.18 7.11 99.48 0.71 0.89 16 26 H -0.28 -0.72 7.11 99.48 0.71 -0.01 16 27 H -0.24 0.59 7.04 99.48 0.70 1.29 16 28 C -0.14 -0.94 9.62 22.37 0.22 -0.72 16 29 C -0.09 0.15 9.68 22.23 0.22 0.36 16 30 C -0.11 -0.19 9.75 22.52 0.22 0.03 16 31 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 32 H 0.09 -0.68 7.96 -2.39 -0.02 -0.70 16 33 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 34 H 0.07 -0.28 7.96 -2.39 -0.02 -0.29 16 35 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 36 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 37 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 38 H 0.09 -0.65 7.96 -2.39 -0.02 -0.66 16 39 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 40 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 41 H 0.15 -0.75 8.06 -2.91 -0.02 -0.77 16 42 H 0.08 0.02 8.08 -2.39 -0.02 0.00 16 43 H 0.08 0.02 8.08 -2.39 -0.02 0.00 16 44 H 0.42 -4.03 8.46 -92.70 -0.78 -4.82 16 45 H 0.13 -1.09 7.68 -2.39 -0.02 -1.11 16 46 H 0.13 -1.09 7.65 -2.39 -0.02 -1.11 16 47 H 0.16 -1.37 6.30 -2.91 -0.02 -1.39 16 48 H 0.16 -1.35 8.06 -2.91 -0.02 -1.37 16 49 H 0.14 -0.49 4.86 -2.91 -0.01 -0.51 16 50 H 0.12 0.06 7.96 -2.38 -0.02 0.04 16 51 H 0.39 -1.51 8.70 -74.06 -0.64 -2.16 16 52 H 0.12 1.07 8.06 -2.91 -0.02 1.05 16 53 H 0.15 -0.75 8.06 -2.91 -0.02 -0.77 16 54 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 Total: 0.00 -27.67 465.29 5.53 -22.14 By element: Atomic # 1 Polarization: -15.02 SS G_CDS: 0.25 Total: -14.77 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 7.52 Total: 13.54 kcal Atomic # 7 Polarization: 2.46 SS G_CDS: -2.59 Total: -0.13 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -2.36 Total: -14.76 kcal Atomic # 14 Polarization: -8.73 SS G_CDS: 2.70 Total: -6.02 kcal Total: -27.67 5.53 -22.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_4860298.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.302 kcal (2) G-P(sol) polarization free energy of solvation -27.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds