Wall clock time and date at job start Sun Mar 7 2021 04:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37641 * 125.67133 * 2 1 4 4 C 1.46670 * 126.23046 * 0.02562 * 3 2 1 5 5 O 1.21700 * 119.99555 * 3.94755 * 4 3 2 6 6 N 1.34767 * 120.00578 * 183.93908 * 4 3 2 7 7 C 1.46501 * 120.00515 * 174.64108 * 6 4 3 8 8 C 1.50698 * 109.47562 * 180.02562 * 7 6 4 9 9 C 1.38340 * 119.85886 * 89.99557 * 8 7 6 10 10 C 1.37976 * 120.14372 * 180.02562 * 9 8 7 11 11 C 1.39528 * 119.85345 * 359.97438 * 10 9 8 12 12 C 1.43200 * 120.14203 * 179.97438 * 11 10 9 13 13 C 9.66392 * 150.33301 * 173.67521 * 3 1 2 14 14 Si 9.37195 * 173.31059 * 20.63441 * 6 1 2 15 15 C 1.86300 * 109.47048 * 289.16389 * 14 13 12 16 16 C 1.86290 * 109.47170 * 49.16704 * 14 13 12 17 17 C 1.86302 * 109.47016 * 169.16699 * 14 13 12 18 18 C 1.39534 * 119.72219 * 0.25274 * 11 10 9 19 19 C 1.37981 * 119.85257 * 359.51708 * 18 11 10 20 20 C 1.37886 * 107.54719 * 179.75796 * 3 2 1 21 21 C 1.39879 * 107.09149 * 0.23883 * 20 3 2 22 22 Br 1.89097 * 126.07384 * 179.97438 * 21 20 3 23 23 C 1.35501 * 107.85432 * 0.02562 * 21 20 3 24 24 C 1.50700 * 125.57305 * 179.97438 * 23 21 20 25 25 O 1.42907 * 109.47106 * 122.93953 * 24 23 21 26 26 Si 1.86302 * 109.47246 * 242.93913 * 24 23 21 27 27 H 1.48493 * 109.47393 * 292.65516 * 26 24 23 28 28 H 1.48497 * 109.46803 * 52.65632 * 26 24 23 29 29 H 1.48498 * 109.46869 * 172.65588 * 26 24 23 30 30 H 1.08994 * 109.46964 * 84.19613 * 1 2 3 31 31 H 1.09004 * 109.46605 * 204.19606 * 1 2 3 32 32 H 1.08999 * 109.47023 * 324.19327 * 1 2 3 33 33 H 0.97001 * 120.00013 * 354.64367 * 6 4 3 34 34 H 1.08998 * 109.47079 * 60.00075 * 7 6 4 35 35 H 1.08999 * 109.47247 * 300.00717 * 7 6 4 36 36 H 1.08000 * 119.92633 * 0.02646 * 9 8 7 37 37 H 1.08001 * 120.06997 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.47253 * 60.00173 * 15 14 13 39 39 H 1.08997 * 109.46930 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47356 * 300.00187 * 15 14 13 41 41 H 1.08997 * 109.47524 * 60.00288 * 16 14 13 42 42 H 1.09009 * 109.47151 * 179.97438 * 16 14 13 43 43 H 1.09005 * 109.47316 * 299.99700 * 16 14 13 44 44 H 1.09000 * 109.47345 * 59.99194 * 17 14 13 45 45 H 1.08999 * 109.47178 * 180.02562 * 17 14 13 46 46 H 1.09001 * 109.46927 * 299.99828 * 17 14 13 47 47 H 1.08000 * 120.07540 * 179.71930 * 18 11 10 48 48 H 1.08000 * 119.92670 * 180.23418 * 19 18 11 49 49 H 1.08000 * 126.45349 * 180.27578 * 20 3 2 50 50 H 1.09000 * 109.47297 * 2.94390 * 24 23 21 51 51 H 0.96699 * 114.00208 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2677 1.1182 0.0000 4 6 1.8121 2.5123 0.0005 5 8 0.6236 2.7640 0.0736 6 7 2.7094 3.5146 -0.0797 7 6 2.2506 4.9009 -0.1976 8 6 3.4425 5.8202 -0.2703 9 6 3.9917 6.1400 -1.4991 10 6 5.0834 6.9806 -1.5725 11 6 5.6331 7.5088 -0.4039 12 6 6.7664 8.3814 -0.4728 13 6 7.6966 9.0957 -0.5269 14 14 9.2007 10.2531 -0.6173 15 6 10.1064 10.2226 1.0103 16 6 10.3425 9.6828 -1.9743 17 6 8.6276 11.9890 -0.9766 18 6 5.0774 7.1785 0.8327 19 6 3.9828 6.3405 0.8921 20 6 3.5781 0.6892 0.0056 21 6 3.5530 -0.7093 0.0033 22 35 5.0610 -1.8501 0.0081 23 6 2.2560 -1.1015 -0.0040 24 6 1.7715 -2.5285 -0.0091 25 8 0.9190 -2.7462 1.1169 26 14 0.8231 -2.8567 -1.5787 27 1 -0.4345 -2.0672 -1.5715 28 1 1.6490 -2.4614 -2.7478 29 1 0.4990 -4.3031 -1.6679 30 1 -0.3633 0.1039 -1.0224 31 1 -0.3633 -0.9374 0.4212 32 1 -0.3633 0.8334 0.6012 33 1 3.6591 3.3182 -0.0595 34 1 1.6453 5.1584 0.6715 35 1 1.6523 5.0100 -1.1021 36 1 3.5650 5.7308 -2.4029 37 1 5.5114 7.2292 -2.5324 38 1 10.4417 9.2070 1.2206 39 1 10.9690 10.8870 0.9586 40 1 9.4383 10.5564 1.8043 41 1 9.8126 9.7007 -2.9266 42 1 11.2052 10.3471 -2.0265 43 1 10.6778 8.6671 -1.7641 44 1 7.9594 12.3228 -0.1828 45 1 9.4905 12.6530 -1.0290 46 1 8.0977 12.0069 -1.9290 47 1 5.5012 7.5805 1.7412 48 1 3.5495 6.0872 1.8484 49 1 4.4582 1.3152 0.0112 50 1 2.6263 -3.2025 0.0467 51 1 0.5698 -3.6459 1.1777 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_5000100.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:16:31 Heat of formation + Delta-G solvation = 13.587768 kcal Electronic energy + Delta-G solvation = -30935.662066 eV Core-core repulsion = 26585.703647 eV Total energy + Delta-G solvation = -4349.958418 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 448.073 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.86317 -40.85902 -40.01074 -37.79427 -36.49520 -34.71440 -34.22422 -32.54822 -32.10002 -31.45387 -30.90447 -29.45888 -28.28626 -28.28377 -28.04127 -27.39676 -26.16945 -23.76899 -23.33825 -22.80830 -21.56240 -20.48858 -19.53693 -19.07613 -18.62475 -17.40312 -17.13114 -17.09832 -16.64777 -16.35463 -16.04014 -15.94811 -15.59585 -15.30172 -14.89221 -14.64178 -14.53416 -14.43545 -14.36710 -14.29338 -14.15798 -14.11184 -13.90713 -13.85623 -13.83484 -13.70562 -13.27348 -13.16413 -13.16234 -12.98576 -12.83808 -12.63952 -12.38259 -12.32528 -12.21566 -12.00578 -11.99517 -11.91274 -11.61221 -11.39781 -11.14658 -10.80195 -10.67528 -10.64152 -10.33293 -10.06377 -9.81578 -9.53402 -9.27733 -0.30891 0.09775 0.30059 0.60789 0.84552 1.15034 1.33512 1.38283 1.40130 1.43267 1.64913 1.70440 1.81085 2.11123 2.18404 2.39265 2.46294 2.47681 2.98907 3.11779 3.46642 3.55216 3.62026 3.76531 3.77709 3.83623 3.91622 4.02640 4.19712 4.26568 4.30382 4.32126 4.42345 4.56698 4.59382 4.59966 4.69424 4.82469 4.83639 4.83896 4.86758 4.89647 4.89710 4.92493 4.97278 5.14864 5.20059 5.27705 5.39039 5.43511 5.58353 5.58585 5.68114 5.68469 5.80573 5.80814 6.31974 6.57248 6.67063 6.96653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.395 5.395 3 C -0.054 4.054 4 C 0.593 3.407 5 O -0.573 6.573 6 N -0.701 5.701 7 C 0.169 3.831 8 C -0.100 4.100 9 C -0.093 4.093 10 C -0.109 4.109 11 C -0.008 4.008 12 C -0.191 4.191 13 C -0.392 4.392 14 Si 1.201 2.799 15 C -0.462 4.462 16 C -0.462 4.462 17 C -0.463 4.463 18 C -0.109 4.109 19 C -0.094 4.094 20 C -0.103 4.103 21 C -0.178 4.178 22 Br -0.015 7.015 23 C 0.084 3.916 24 C -0.062 4.062 25 O -0.555 6.555 26 Si 0.954 3.046 27 H -0.247 1.247 28 H -0.265 1.265 29 H -0.226 1.226 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.415 0.585 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.133 0.867 48 H 0.146 0.854 49 H 0.178 0.822 50 H 0.107 0.893 51 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -0.276 -1.097 2.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.067 5.067 3 C -0.168 4.168 4 C 0.381 3.619 5 O -0.454 6.454 6 N -0.353 5.353 7 C 0.046 3.954 8 C -0.101 4.101 9 C -0.111 4.111 10 C -0.127 4.127 11 C -0.008 4.008 12 C -0.191 4.191 13 C -0.423 4.423 14 Si 1.382 2.618 15 C -0.569 4.569 16 C -0.569 4.569 17 C -0.570 4.570 18 C -0.127 4.127 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.263 4.263 22 Br 0.069 6.931 23 C -0.038 4.038 24 C -0.172 4.172 25 O -0.365 6.365 26 Si 0.773 3.227 27 H -0.170 1.170 28 H -0.189 1.189 29 H -0.148 1.148 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.114 0.886 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.087 0.913 47 H 0.151 0.849 48 H 0.164 0.836 49 H 0.195 0.805 50 H 0.125 0.875 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.587 -0.106 -1.695 2.324 hybrid contribution -0.086 -0.408 0.376 0.561 sum 1.501 -0.514 -1.319 2.063 Atomic orbital electron populations 1.22635 0.74607 1.06475 1.04641 1.43888 1.07629 1.04078 1.51122 1.20081 0.90256 0.87748 1.18695 1.16899 0.85362 0.83602 0.76017 1.90815 1.17337 1.85113 1.52128 1.45590 1.10272 1.05422 1.73975 1.20204 0.93516 0.77978 1.03656 1.19894 0.97363 0.99228 0.93601 1.21223 0.94989 0.96735 0.98192 1.21388 0.96471 0.97144 0.97674 1.16525 0.93004 0.96530 0.94782 1.21601 0.96675 0.98910 1.01919 1.37489 1.04553 1.01880 0.98333 0.76291 0.57713 0.61242 0.66536 1.26218 1.08902 1.05077 1.16741 1.26218 1.11051 1.06620 1.13035 1.26232 1.06908 1.18630 1.05231 1.21385 0.96400 0.98151 0.96772 1.21223 0.95042 0.95959 0.99011 1.21482 0.95477 0.92995 1.03006 1.20891 0.91277 0.94890 1.19278 1.96651 1.35397 1.62846 1.98245 1.19949 0.89216 0.88767 1.05864 1.24420 1.00204 0.91535 1.01058 1.86433 1.66179 1.38091 1.45776 0.85706 0.79672 0.82717 0.74614 1.16976 1.18929 1.14766 0.89796 0.87073 0.88595 0.74772 0.90082 0.89930 0.83463 0.84826 0.91200 0.89251 0.91210 0.91191 0.89248 0.91208 0.91282 0.89232 0.91257 0.84888 0.83607 0.80498 0.87516 0.74134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 8.57 127.77 1.09 1.29 16 2 N -0.39 -2.27 3.12 -519.60 -1.62 -3.89 16 3 C -0.05 -0.29 6.89 40.35 0.28 -0.01 16 4 C 0.59 3.44 7.77 86.45 0.67 4.11 16 5 O -0.57 -6.72 14.79 -4.35 -0.06 -6.79 16 6 N -0.70 0.10 5.53 -470.84 -2.60 -2.51 16 7 C 0.17 -0.12 5.80 85.63 0.50 0.38 16 8 C -0.10 0.09 5.25 -19.82 -0.10 -0.02 16 9 C -0.09 0.04 9.68 22.23 0.22 0.26 16 10 C -0.11 -0.32 9.75 22.52 0.22 -0.10 16 11 C -0.01 -0.05 5.72 -21.41 -0.12 -0.17 16 12 C -0.19 -1.54 13.24 30.01 0.40 -1.15 16 13 C -0.39 -1.64 12.15 74.32 0.90 -0.74 16 14 Si 1.20 -6.59 14.26 68.60 0.98 -5.61 16 15 C -0.46 2.16 8.65 113.37 0.98 3.14 16 16 C -0.46 2.18 8.65 113.37 0.98 3.16 16 17 C -0.46 2.07 8.65 113.37 0.98 3.05 16 18 C -0.11 -0.34 9.75 22.52 0.22 -0.12 16 19 C -0.09 0.02 9.68 22.23 0.22 0.23 16 20 C -0.10 -0.28 10.34 22.58 0.23 -0.05 16 21 C -0.18 -0.79 6.53 22.03 0.14 -0.65 16 22 Br -0.02 -0.04 33.05 -20.37 -0.67 -0.71 16 23 C 0.08 0.37 5.17 41.34 0.21 0.59 16 24 C -0.06 0.05 2.78 71.24 0.20 0.24 16 25 O -0.55 1.20 11.43 -148.98 -1.70 -0.50 16 26 Si 0.95 -1.60 26.51 68.60 1.82 0.22 16 27 H -0.25 0.20 6.11 99.48 0.61 0.81 16 28 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 29 H -0.23 0.88 7.11 99.48 0.71 1.59 16 30 H 0.08 0.19 7.77 -2.39 -0.02 0.17 16 31 H 0.11 0.06 5.72 -2.38 -0.01 0.05 16 32 H 0.10 0.56 6.57 -2.39 -0.02 0.55 16 33 H 0.42 -1.64 7.36 -92.71 -0.68 -2.32 16 34 H 0.08 0.02 8.08 -2.39 -0.02 0.00 16 35 H 0.08 -0.03 8.08 -2.39 -0.02 -0.05 16 36 H 0.15 -0.61 8.06 -2.91 -0.02 -0.64 16 37 H 0.13 0.14 8.06 -2.91 -0.02 0.11 16 38 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 39 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 40 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 42 H 0.09 -0.61 7.96 -2.38 -0.02 -0.62 16 43 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 44 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 45 H 0.09 -0.59 7.96 -2.39 -0.02 -0.61 16 46 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 47 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 48 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 49 H 0.18 -0.52 7.45 -2.91 -0.02 -0.54 16 50 H 0.11 -0.31 6.95 -2.39 -0.02 -0.33 16 51 H 0.41 -4.82 8.74 -74.06 -0.65 -5.47 16 Total: 0.00 -20.89 454.66 4.65 -16.24 By element: Atomic # 1 Polarization: -10.21 SS G_CDS: 0.30 Total: -9.90 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 8.22 Total: 13.46 kcal Atomic # 7 Polarization: -2.17 SS G_CDS: -4.23 Total: -6.40 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -1.77 Total: -7.29 kcal Atomic # 14 Polarization: -8.19 SS G_CDS: 2.80 Total: -5.39 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -0.67 Total: -0.71 kcal Total: -20.89 4.65 -16.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_5000100.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.827 kcal (2) G-P(sol) polarization free energy of solvation -20.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds