Wall clock time and date at job start Sun Mar 7 2021 04:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86301 * 109.46963 * 2 1 4 4 C 1.86299 * 109.46911 * 240.00129 * 2 1 3 5 5 C 1.90000 * 109.47171 * 120.00102 * 2 1 3 6 6 C 3.07393 * 109.47248 * 119.99930 * 2 1 3 7 7 C 4.50598 * 109.47282 * 119.99966 * 2 1 3 8 8 C 1.39539 * 120.14033 * 272.63974 * 7 6 5 9 9 C 1.37972 * 119.85505 * 179.69734 * 8 7 6 10 10 C 1.38344 * 120.14183 * 0.58074 * 9 8 7 11 11 C 1.50697 * 119.85871 * 179.73813 * 10 9 8 12 12 N 1.46501 * 109.47419 * 269.98056 * 11 10 9 13 13 C 1.34774 * 119.99961 * 180.02562 * 12 11 10 14 14 O 1.21274 * 120.00217 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99827 * 179.97438 * 13 12 11 16 16 O 1.42896 * 109.47362 * 179.97438 * 15 13 12 17 17 C 1.35913 * 117.00163 * 179.97438 * 16 15 13 18 18 C 1.38677 * 120.06229 * 359.73081 * 17 16 15 19 19 C 1.38190 * 119.95676 * 179.71592 * 18 17 16 20 20 C 1.38238 * 120.07067 * 0.53577 * 19 18 17 21 21 C 1.50697 * 119.94130 * 179.74319 * 20 19 18 22 22 O 1.42905 * 109.47054 * 120.01886 * 21 20 19 23 23 Si 1.86295 * 109.47274 * 0.02562 * 21 20 19 24 24 H 1.48503 * 109.47039 * 59.99882 * 23 21 20 25 25 H 1.48500 * 109.47362 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47330 * 300.00230 * 23 21 20 27 27 C 1.38292 * 120.11731 * 359.75819 * 20 19 18 28 28 C 1.38195 * 120.04551 * 359.96594 * 27 20 19 29 29 Br 1.89098 * 120.03572 * 179.97438 * 28 27 20 30 30 C 1.38344 * 120.28621 * 359.71889 * 10 9 8 31 31 C 1.37976 * 120.14221 * 359.97438 * 30 10 9 32 32 H 1.08996 * 109.47221 * 299.99679 * 1 2 3 33 33 H 1.09002 * 109.47179 * 60.00030 * 1 2 3 34 34 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47144 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46890 * 300.00474 * 3 2 1 37 37 H 1.08993 * 109.47131 * 59.99659 * 3 2 1 38 38 H 1.09000 * 109.47172 * 299.99831 * 4 2 1 39 39 H 1.09002 * 109.47329 * 59.99933 * 4 2 1 40 40 H 1.09001 * 109.47058 * 179.97438 * 4 2 1 41 41 H 1.08006 * 120.07329 * 359.97438 * 8 7 6 42 42 H 1.07997 * 119.92872 * 180.29611 * 9 8 7 43 43 H 1.09004 * 109.47105 * 29.97731 * 11 10 9 44 44 H 1.08996 * 109.47270 * 149.97592 * 11 10 9 45 45 H 0.96998 * 119.99672 * 359.97438 * 12 11 10 46 46 H 1.09004 * 109.47013 * 300.00042 * 15 13 12 47 47 H 1.09004 * 109.46971 * 60.00035 * 15 13 12 48 48 H 1.08006 * 120.01802 * 359.97438 * 18 17 16 49 49 H 1.07998 * 119.96166 * 180.27171 * 19 18 17 50 50 H 1.08997 * 109.47055 * 240.01891 * 21 20 19 51 51 H 0.96697 * 114.00102 * 300.00135 * 22 21 20 52 52 H 1.07995 * 119.97504 * 179.97438 * 27 20 19 53 53 H 1.07999 * 119.93193 * 180.02562 * 30 10 9 54 54 H 1.07995 * 120.07445 * 180.02562 * 31 30 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4964 -0.8957 1.5513 6 6 2.8877 -1.4490 2.5099 7 6 3.3651 -2.1241 3.6791 8 6 2.9851 -1.6829 4.9472 9 6 3.4435 -2.3415 6.0695 10 6 4.2878 -3.4297 5.9401 11 6 4.7894 -4.1407 7.1704 12 7 6.0454 -3.5282 7.6105 13 6 6.6816 -4.0035 8.6995 14 8 6.2142 -4.9379 9.3153 15 6 7.9738 -3.3738 9.1518 16 8 8.4494 -4.0479 10.3186 17 6 9.6140 -3.6006 10.8580 18 6 10.2878 -2.5389 10.2734 19 6 11.4686 -2.0821 10.8271 20 6 11.9846 -2.6895 11.9566 21 6 13.2755 -2.1927 12.5547 22 8 13.0439 -1.7626 13.8976 23 14 13.9173 -0.7634 11.5468 24 1 12.9160 0.3333 11.5497 25 1 15.1891 -0.2734 12.1365 26 1 14.1579 -1.2102 10.1513 27 6 11.3183 -3.7525 12.5386 28 6 10.1341 -4.2095 11.9922 29 35 9.2236 -5.6635 12.7878 30 6 4.6734 -3.8683 4.6859 31 6 4.2169 -3.2223 3.5554 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.5740 1.7565 -0.0005 36 1 2.1205 2.2703 -0.8900 37 1 2.1206 2.2703 0.8899 38 1 2.1206 -1.9059 -1.5212 39 1 2.1206 -0.3644 -2.4112 40 1 3.5740 -0.8778 -1.5214 41 1 2.3298 -0.8304 5.0497 42 1 3.1462 -2.0040 7.0514 43 1 4.0476 -4.0593 7.9649 44 1 4.9595 -5.1921 6.9386 45 1 6.4194 -2.7811 7.1178 46 1 8.7154 -3.4552 8.3571 47 1 7.8039 -2.3224 9.3840 48 1 9.8877 -2.0667 9.3883 49 1 11.9912 -1.2524 10.3744 50 1 14.0103 -2.9978 12.5526 51 1 12.3990 -1.0462 13.9754 52 1 11.7236 -4.2256 13.4207 53 1 5.3324 -4.7187 4.5915 54 1 4.5183 -3.5659 2.5769 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_6201210.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:21:40 Heat of formation + Delta-G solvation = -41.444461 kcal Electronic energy + Delta-G solvation = -33367.334496 eV Core-core repulsion = 28633.507279 eV Total energy + Delta-G solvation = -4733.827216 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 475.077 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.71483 -40.93420 -40.22924 -39.10357 -37.22686 -36.39648 -34.43822 -33.63743 -32.11012 -32.08186 -31.73797 -30.52408 -29.71798 -29.44575 -28.29338 -28.28920 -27.12128 -26.19580 -24.05270 -23.77684 -22.95725 -22.40757 -21.72612 -19.63940 -19.54651 -18.78431 -18.22483 -17.59378 -17.21262 -17.16042 -16.68136 -16.51283 -16.18839 -16.04815 -15.96117 -15.77962 -15.64636 -15.17400 -14.89795 -14.59215 -14.55467 -14.44436 -14.17029 -14.12320 -14.12030 -13.88724 -13.84866 -13.84105 -13.71051 -13.58603 -13.17222 -13.16619 -12.99247 -12.65461 -12.39498 -12.38233 -12.23347 -12.21515 -12.20291 -12.04862 -12.00369 -11.89166 -11.67395 -11.62116 -11.21901 -11.13215 -10.80053 -10.64936 -10.40904 -10.29587 -10.07382 -9.98178 -9.53629 -9.33146 -0.31813 -0.08567 0.10564 0.28898 0.62974 1.20971 1.34368 1.37386 1.42005 1.50001 1.54200 1.65522 1.69642 1.96431 2.27879 2.37667 2.38394 2.47007 2.58220 2.97999 3.45861 3.48849 3.49605 3.65722 3.73571 3.75253 3.79704 3.82770 3.90869 3.99144 4.04057 4.09040 4.25836 4.29666 4.33449 4.58577 4.58748 4.62401 4.64634 4.81913 4.82980 4.83335 4.83349 4.86223 4.88936 4.89166 4.91832 4.96399 4.96485 5.16955 5.20364 5.20841 5.38255 5.42708 5.46626 5.58056 5.67477 5.67963 5.79571 6.02800 6.38212 6.56366 6.72892 7.06653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.200 2.800 3 C -0.461 4.461 4 C -0.462 4.462 5 C -0.392 4.392 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.109 4.109 9 C -0.094 4.094 10 C -0.099 4.099 11 C 0.166 3.834 12 N -0.706 5.706 13 C 0.514 3.486 14 O -0.566 6.566 15 C 0.033 3.967 16 O -0.304 6.304 17 C 0.148 3.852 18 C -0.191 4.191 19 C -0.068 4.068 20 C -0.151 4.151 21 C -0.080 4.080 22 O -0.554 6.554 23 Si 0.983 3.017 24 H -0.243 1.243 25 H -0.279 1.279 26 H -0.248 1.248 27 C -0.030 4.030 28 C -0.143 4.143 29 Br -0.052 7.052 30 C -0.094 4.094 31 C -0.109 4.109 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.419 0.581 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.176 0.824 49 H 0.152 0.848 50 H 0.123 0.877 51 H 0.389 0.611 52 H 0.143 0.857 53 H 0.147 0.853 54 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 8.153 -7.899 11.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.382 2.618 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.423 4.423 6 C -0.191 4.191 7 C -0.009 4.009 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.099 4.099 11 C 0.044 3.956 12 N -0.361 5.361 13 C 0.300 3.700 14 O -0.443 6.443 15 C -0.045 4.045 16 O -0.216 6.216 17 C 0.100 3.900 18 C -0.210 4.210 19 C -0.086 4.086 20 C -0.153 4.153 21 C -0.190 4.190 22 O -0.362 6.362 23 Si 0.806 3.194 24 H -0.167 1.167 25 H -0.205 1.205 26 H -0.172 1.172 27 C -0.050 4.050 28 C -0.223 4.223 29 Br 0.033 6.967 30 C -0.112 4.112 31 C -0.127 4.127 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.151 0.849 42 H 0.165 0.835 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.257 0.743 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.193 0.807 49 H 0.169 0.831 50 H 0.141 0.859 51 H 0.239 0.761 52 H 0.161 0.839 53 H 0.165 0.835 54 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.958 6.913 -7.322 10.115 hybrid contribution -0.293 0.151 0.157 0.365 sum 0.665 7.064 -7.165 10.083 Atomic orbital electron populations 1.26242 1.20640 1.04834 1.05365 0.76295 0.64849 0.63499 0.57187 1.26208 1.06620 1.18635 1.05390 1.26222 1.06647 1.08481 1.15615 1.37462 0.99230 1.00484 1.05077 1.21600 1.01087 1.00087 0.96326 1.16530 0.98458 0.95850 0.90051 1.21389 0.99928 1.00351 0.90980 1.21215 0.96322 0.94485 0.99197 1.19888 0.99028 0.96878 0.94124 1.20134 0.85489 0.96623 0.93390 1.45726 1.24433 1.37209 1.28753 1.20458 0.85895 0.83186 0.80435 1.90799 1.67836 1.29794 1.55896 1.22832 0.94734 0.98366 0.88526 1.86243 1.35835 1.56819 1.42714 1.18784 0.85930 0.93296 0.91971 1.21508 0.97659 0.98043 1.03765 1.21255 0.94746 0.98498 0.94098 1.20391 0.99145 0.97884 0.97844 1.25090 0.96364 1.08270 0.89227 1.86504 1.66323 1.58293 1.25039 0.85223 0.79530 0.76606 0.78017 1.16678 1.20470 1.17219 1.20906 0.90967 0.94626 0.98512 1.21311 1.00206 1.00844 0.99947 1.96765 1.77237 1.41576 1.81092 1.21216 0.99175 0.99841 0.90993 1.21386 0.96706 0.94611 0.99954 0.91211 0.89272 0.91348 0.91146 0.89270 0.91170 0.91273 0.89280 0.91119 0.84876 0.83531 0.90570 0.90581 0.74327 0.85212 0.85196 0.80712 0.83069 0.85909 0.76145 0.83927 0.83541 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.40 8.65 113.37 0.98 3.39 16 2 Si 1.20 -7.71 14.26 68.60 0.98 -6.73 16 3 C -0.46 2.67 8.65 113.37 0.98 3.65 16 4 C -0.46 2.56 8.65 113.37 0.98 3.54 16 5 C -0.39 -1.18 12.14 74.32 0.90 -0.28 16 6 C -0.19 -1.29 13.24 30.02 0.40 -0.89 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 8 C -0.11 -0.15 9.75 22.52 0.22 0.07 16 9 C -0.09 0.20 9.68 22.23 0.22 0.41 16 10 C -0.10 0.26 5.25 -19.81 -0.10 0.16 16 11 C 0.17 -0.36 5.79 85.63 0.50 0.14 16 12 N -0.71 3.31 5.55 -466.80 -2.59 0.72 16 13 C 0.51 0.79 7.91 87.66 0.69 1.48 16 14 O -0.57 -7.54 16.50 16.03 0.26 -7.28 16 15 C 0.03 -0.15 5.22 71.24 0.37 0.22 16 16 O -0.30 -1.47 9.01 -73.53 -0.66 -2.14 16 17 C 0.15 0.40 6.68 22.52 0.15 0.55 16 18 C -0.19 0.81 9.04 22.36 0.20 1.01 16 19 C -0.07 0.29 8.66 22.26 0.19 0.49 16 20 C -0.15 0.23 5.39 -19.85 -0.11 0.12 16 21 C -0.08 0.26 2.82 71.23 0.20 0.46 16 22 O -0.55 0.61 12.77 -148.98 -1.90 -1.30 16 23 Si 0.98 -4.76 25.07 68.60 1.72 -3.04 16 24 H -0.24 1.45 7.11 99.48 0.71 2.16 16 25 H -0.28 0.03 7.11 99.48 0.71 0.73 16 26 H -0.25 1.24 7.11 99.48 0.71 1.95 16 27 C -0.03 -0.07 9.35 22.27 0.21 0.13 16 28 C -0.14 -0.80 6.24 22.40 0.14 -0.66 16 29 Br -0.05 -0.49 33.16 -20.37 -0.68 -1.16 16 30 C -0.09 0.19 9.68 22.23 0.22 0.41 16 31 C -0.11 -0.15 9.75 22.52 0.22 0.07 16 32 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 33 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 34 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 35 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.09 -0.69 7.96 -2.39 -0.02 -0.71 16 37 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 38 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 39 H 0.09 -0.67 7.96 -2.39 -0.02 -0.69 16 40 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 41 H 0.13 -0.05 8.06 -2.91 -0.02 -0.07 16 42 H 0.15 -0.82 8.06 -2.91 -0.02 -0.85 16 43 H 0.08 -0.03 8.08 -2.38 -0.02 -0.05 16 44 H 0.08 -0.03 8.08 -2.39 -0.02 -0.05 16 45 H 0.42 -4.57 8.46 -92.71 -0.78 -5.35 16 46 H 0.13 -1.48 7.65 -2.38 -0.02 -1.50 16 47 H 0.13 -1.49 7.68 -2.38 -0.02 -1.51 16 48 H 0.18 -2.12 6.30 -2.91 -0.02 -2.13 16 49 H 0.15 -1.34 4.87 -2.91 -0.01 -1.35 16 50 H 0.12 -0.52 7.96 -2.39 -0.02 -0.54 16 51 H 0.39 -2.96 8.70 -74.06 -0.64 -3.61 16 52 H 0.14 0.31 8.06 -2.91 -0.02 0.29 16 53 H 0.15 -0.82 8.06 -2.91 -0.02 -0.84 16 54 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -28.34 485.64 4.84 -23.50 By element: Atomic # 1 Polarization: -17.15 SS G_CDS: 0.28 Total: -16.87 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 7.43 Total: 14.30 kcal Atomic # 7 Polarization: 3.31 SS G_CDS: -2.59 Total: 0.72 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -2.30 Total: -10.71 kcal Atomic # 14 Polarization: -12.47 SS G_CDS: 2.70 Total: -9.77 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -0.68 Total: -1.16 kcal Total: -28.34 4.84 -23.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_6201210.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.949 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds