Wall clock time and date at job start Sun Mar 7 2021 04:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21685 * 120.00354 * 0.02562 * 13 12 11 15 15 C 1.46675 * 119.99335 * 180.02562 * 13 12 11 16 16 C 1.37872 * 126.23270 * 179.69490 * 15 13 12 17 17 C 1.39833 * 107.08722 * 179.84757 * 16 15 13 18 18 C 1.35449 * 107.86506 * 0.42085 * 17 16 15 19 19 C 1.50700 * 125.56373 * 179.72036 * 18 17 16 20 20 O 1.42903 * 109.47102 * 120.02233 * 19 18 17 21 21 Si 1.86295 * 109.47484 * 0.02562 * 19 18 17 22 22 H 1.48496 * 109.47454 * 180.02562 * 21 19 18 23 23 H 1.48510 * 109.46684 * 300.00175 * 21 19 18 24 24 H 1.48498 * 109.47180 * 59.99565 * 21 19 18 25 25 N 1.35532 * 108.87030 * 359.73453 * 18 17 16 26 26 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 27 27 C 1.37976 * 120.14217 * 0.02562 * 26 10 9 28 28 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 30 30 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 33 33 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 34 34 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 35 35 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 36 36 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 37 37 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 39 39 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 40 40 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 41 41 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 42 42 H 1.08003 * 126.45300 * 0.02562 * 16 15 13 43 43 H 1.08005 * 126.07007 * 180.15375 * 17 16 15 44 44 H 1.09001 * 109.46809 * 240.01540 * 19 18 17 45 45 H 0.96695 * 113.99941 * 180.02562 * 20 19 18 46 46 H 0.97005 * 125.67486 * 179.97438 * 25 18 17 47 47 H 1.07999 * 119.93193 * 179.97438 * 26 10 9 48 48 H 1.08003 * 120.07184 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0668 -5.7504 9.3168 15 6 3.0290 -6.8603 9.1366 16 6 3.1373 -7.7033 10.2222 17 6 1.9636 -8.4617 10.2723 18 6 1.1802 -8.0839 9.2338 19 6 -0.1768 -8.6524 8.9075 20 8 -1.1523 -7.6089 8.9463 21 14 -0.6184 -9.9620 10.1567 22 1 -1.9552 -10.5225 9.8347 23 1 0.3954 -11.0464 10.1164 24 1 -0.6468 -9.3613 11.5145 25 7 1.8161 -7.1115 8.5361 26 6 3.5437 -2.2708 6.0695 27 6 3.0807 -1.6156 4.9469 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5739 1.7566 0.0005 32 1 2.1205 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9058 -1.5212 35 1 2.1207 -0.3643 -2.4111 36 1 3.5740 -0.8777 -1.5214 37 1 4.3313 -3.6977 2.5772 38 1 5.1551 -4.8441 4.5914 39 1 5.7241 -4.6519 6.9391 40 1 4.9599 -3.4146 7.9655 41 1 2.9639 -5.2230 7.1154 42 1 3.9704 -7.7641 10.9068 43 1 1.7258 -9.2178 11.0059 44 1 -0.1558 -9.0932 7.9108 45 1 -2.0513 -7.9032 8.7460 46 1 1.4737 -6.6669 7.7448 47 1 3.3239 -1.8784 7.0514 48 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_6580494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:22:18 Heat of formation + Delta-G solvation = -4.159208 kcal Electronic energy + Delta-G solvation = -26618.709220 eV Core-core repulsion = 22763.336857 eV Total energy + Delta-G solvation = -3855.372363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 356.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.44673 -40.78527 -39.84817 -37.81695 -36.33883 -34.37958 -32.36701 -32.13064 -31.74288 -31.12900 -29.66617 -28.50454 -28.49831 -27.90145 -26.25698 -23.79803 -23.38807 -22.63769 -21.49032 -21.10295 -19.73087 -19.53499 -18.69065 -17.25252 -16.98107 -16.83790 -16.37535 -16.16438 -16.01461 -15.93350 -15.23415 -15.02925 -14.77259 -14.60704 -14.51563 -14.43982 -14.32335 -14.19615 -14.07986 -14.01086 -13.79339 -13.58082 -13.52744 -13.39597 -13.39060 -13.18105 -12.79215 -12.66564 -12.39289 -12.19829 -12.12920 -12.08635 -12.00595 -11.63447 -11.19943 -10.96208 -10.76860 -10.64691 -10.25171 -10.08969 -10.01736 -9.51357 -9.18711 -0.29348 0.27129 0.40172 0.96772 1.33287 1.38050 1.46184 1.47580 1.55928 1.62212 1.84840 2.00072 2.13025 2.29932 2.30340 2.40886 2.43271 3.02442 3.15687 3.46100 3.71829 3.73395 3.80592 3.86416 3.88133 4.08948 4.24778 4.26320 4.29843 4.43969 4.58177 4.61173 4.62670 4.62935 4.66915 4.67318 4.67740 4.69514 4.82512 4.92016 5.03642 5.11352 5.17323 5.23193 5.36614 5.37921 5.41139 5.46080 5.46830 5.65677 5.77567 5.86603 6.23799 6.34175 6.44618 6.65992 7.13247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.143 2.857 3 C -0.453 4.453 4 C -0.452 4.452 5 C -0.387 4.387 6 C -0.145 4.145 7 C 0.014 3.986 8 C -0.099 4.099 9 C -0.098 4.098 10 C -0.106 4.106 11 C 0.162 3.838 12 N -0.729 5.729 13 C 0.592 3.408 14 O -0.523 6.523 15 C -0.052 4.052 16 C -0.094 4.094 17 C -0.206 4.206 18 C 0.069 3.931 19 C -0.069 4.069 20 O -0.549 6.549 21 Si 0.972 3.028 22 H -0.255 1.255 23 H -0.245 1.245 24 H -0.243 1.243 25 N -0.522 5.522 26 C -0.097 4.097 27 C -0.099 4.099 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.078 0.922 45 H 0.385 0.615 46 H 0.417 0.583 47 H 0.131 0.869 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 -0.484 -4.933 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.329 2.671 3 C -0.561 4.561 4 C -0.560 4.560 5 C -0.422 4.422 6 C -0.145 4.145 7 C 0.014 3.986 8 C -0.117 4.117 9 C -0.116 4.116 10 C -0.106 4.106 11 C 0.040 3.960 12 N -0.381 5.381 13 C 0.379 3.621 14 O -0.399 6.399 15 C -0.166 4.166 16 C -0.121 4.121 17 C -0.230 4.230 18 C -0.049 4.049 19 C -0.179 4.179 20 O -0.356 6.356 21 Si 0.791 3.209 22 H -0.179 1.179 23 H -0.169 1.169 24 H -0.166 1.166 25 N -0.118 5.118 26 C -0.116 4.116 27 C -0.117 4.117 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.230 0.770 42 H 0.172 0.828 43 H 0.164 0.836 44 H 0.096 0.904 45 H 0.234 0.766 46 H 0.254 0.746 47 H 0.149 0.851 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.675 -0.609 -3.746 5.283 hybrid contribution -0.825 0.122 -0.940 1.257 sum -4.500 -0.487 -4.686 6.516 Atomic orbital electron populations 1.26119 1.19992 1.04947 1.04969 0.77016 0.66001 0.64715 0.59367 1.26119 1.06734 1.18232 1.04966 1.26116 1.06721 1.08415 1.14783 1.36098 1.00196 1.01179 1.04703 1.20970 0.99691 0.98752 0.95116 1.16259 0.98169 0.94497 0.89683 1.21258 0.96968 0.94250 0.99213 1.21055 0.99321 0.99855 0.91395 1.19958 0.99825 0.96429 0.94417 1.20238 0.91391 0.90819 0.93602 1.45953 1.22288 1.40013 1.29876 1.17028 0.85519 0.79550 0.79953 1.90878 1.25791 1.68133 1.55069 1.20388 0.88990 1.05996 1.01183 1.21288 0.98770 0.95235 0.96795 1.20659 0.96219 1.05830 1.00306 1.19857 0.94215 0.95031 0.95826 1.24576 0.86254 0.98242 1.08805 1.86487 1.19934 1.34981 1.94180 0.85342 0.80631 0.76079 0.78829 1.17905 1.16862 1.16596 1.41888 1.14659 1.30537 1.24720 1.21064 0.96842 0.94754 0.98922 1.21263 0.99452 0.99956 0.90980 0.90908 0.90355 0.90929 0.90887 0.90355 0.90907 0.90922 0.90352 0.90889 0.85270 0.85109 0.89937 0.89940 0.77027 0.82815 0.83562 0.90377 0.76641 0.74574 0.85087 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.05 8.65 101.05 0.87 1.93 16 2 Si 1.14 -3.28 14.26 -169.99 -2.42 -5.70 16 3 C -0.45 1.00 8.65 101.05 0.87 1.88 16 4 C -0.45 1.05 8.65 101.05 0.87 1.93 16 5 C -0.39 -0.54 12.14 29.55 0.36 -0.18 16 6 C -0.15 -0.45 13.24 -38.83 -0.51 -0.96 16 7 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 8 C -0.10 -0.09 9.75 -39.19 -0.38 -0.48 16 9 C -0.10 0.02 9.68 -39.64 -0.38 -0.37 16 10 C -0.11 0.02 5.25 -104.55 -0.55 -0.52 16 11 C 0.16 0.02 5.79 -5.19 -0.03 -0.01 16 12 N -0.73 -0.14 5.54 -62.80 -0.35 -0.49 16 13 C 0.59 1.90 7.79 -12.85 -0.10 1.80 16 14 O -0.52 -3.57 16.88 5.20 0.09 -3.48 16 15 C -0.05 -0.13 7.06 -81.98 -0.58 -0.71 16 16 C -0.09 -0.27 10.65 -39.12 -0.42 -0.68 16 17 C -0.21 -0.34 9.32 -39.98 -0.37 -0.71 16 18 C 0.07 0.06 6.51 -81.95 -0.53 -0.48 16 19 C -0.07 0.11 3.07 36.01 0.11 0.22 16 20 O -0.55 0.73 12.86 -35.23 -0.45 0.28 16 21 Si 0.97 -1.65 25.82 -169.99 -4.39 -6.04 16 22 H -0.26 0.45 7.11 56.52 0.40 0.85 16 23 H -0.25 0.23 7.11 56.52 0.40 0.64 16 24 H -0.24 -0.02 7.11 56.52 0.40 0.39 16 25 N -0.52 -0.18 5.99 -5.70 -0.03 -0.21 16 26 C -0.10 0.01 9.68 -39.64 -0.38 -0.38 16 27 C -0.10 -0.10 9.75 -39.19 -0.38 -0.49 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 36 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 37 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 38 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 39 H 0.08 0.04 8.08 -51.93 -0.42 -0.38 16 40 H 0.08 0.05 8.08 -51.93 -0.42 -0.37 16 41 H 0.40 -0.75 7.59 -40.82 -0.31 -1.06 16 42 H 0.15 0.35 8.06 -52.48 -0.42 -0.08 16 43 H 0.15 0.00 6.17 -52.48 -0.32 -0.32 16 44 H 0.08 -0.29 7.96 -51.93 -0.41 -0.70 16 45 H 0.39 -2.19 8.74 45.56 0.40 -1.80 16 46 H 0.42 -0.90 8.19 -40.82 -0.33 -1.23 16 47 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 48 H 0.13 0.00 8.06 -52.48 -0.42 -0.42 16 LS Contribution 420.83 15.07 6.34 6.34 Total: 0.00 -9.72 420.83 -9.82 -19.55 By element: Atomic # 1 Polarization: -5.01 SS G_CDS: -6.45 Total: -11.46 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.15 Total: 1.21 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: -0.38 Total: -0.70 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: -0.37 Total: -3.21 kcal Atomic # 14 Polarization: -4.92 SS G_CDS: -6.81 Total: -11.73 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -9.72 -9.82 -19.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_6580494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.386 kcal (2) G-P(sol) polarization free energy of solvation -9.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds