Wall clock time and date at job start Sun Mar 7 2021 04:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21685 * 120.00354 * 0.02562 * 13 12 11 15 15 C 1.46675 * 119.99335 * 180.02562 * 13 12 11 16 16 C 1.37872 * 126.23270 * 179.69490 * 15 13 12 17 17 C 1.39833 * 107.08722 * 179.84757 * 16 15 13 18 18 C 1.35449 * 107.86506 * 0.42085 * 17 16 15 19 19 C 1.50700 * 125.56373 * 179.72036 * 18 17 16 20 20 O 1.42903 * 109.47102 * 120.02233 * 19 18 17 21 21 Si 1.86295 * 109.47484 * 0.02562 * 19 18 17 22 22 H 1.48496 * 109.47454 * 180.02562 * 21 19 18 23 23 H 1.48510 * 109.46684 * 300.00175 * 21 19 18 24 24 H 1.48498 * 109.47180 * 59.99565 * 21 19 18 25 25 N 1.35532 * 108.87030 * 359.73453 * 18 17 16 26 26 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 27 27 C 1.37976 * 120.14217 * 0.02562 * 26 10 9 28 28 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 30 30 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 33 33 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 34 34 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 35 35 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 36 36 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 37 37 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 39 39 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 40 40 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 41 41 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 42 42 H 1.08003 * 126.45300 * 0.02562 * 16 15 13 43 43 H 1.08005 * 126.07007 * 180.15375 * 17 16 15 44 44 H 1.09001 * 109.46809 * 240.01540 * 19 18 17 45 45 H 0.96695 * 113.99941 * 180.02562 * 20 19 18 46 46 H 0.97005 * 125.67486 * 179.97438 * 25 18 17 47 47 H 1.07999 * 119.93193 * 179.97438 * 26 10 9 48 48 H 1.08003 * 120.07184 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0668 -5.7504 9.3168 15 6 3.0290 -6.8603 9.1366 16 6 3.1373 -7.7033 10.2222 17 6 1.9636 -8.4617 10.2723 18 6 1.1802 -8.0839 9.2338 19 6 -0.1768 -8.6524 8.9075 20 8 -1.1523 -7.6089 8.9463 21 14 -0.6184 -9.9620 10.1567 22 1 -1.9552 -10.5225 9.8347 23 1 0.3954 -11.0464 10.1164 24 1 -0.6468 -9.3613 11.5145 25 7 1.8161 -7.1115 8.5361 26 6 3.5437 -2.2708 6.0695 27 6 3.0807 -1.6156 4.9469 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5739 1.7566 0.0005 32 1 2.1205 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9058 -1.5212 35 1 2.1207 -0.3643 -2.4111 36 1 3.5740 -0.8777 -1.5214 37 1 4.3313 -3.6977 2.5772 38 1 5.1551 -4.8441 4.5914 39 1 5.7241 -4.6519 6.9391 40 1 4.9599 -3.4146 7.9655 41 1 2.9639 -5.2230 7.1154 42 1 3.9704 -7.7641 10.9068 43 1 1.7258 -9.2178 11.0059 44 1 -0.1558 -9.0932 7.9108 45 1 -2.0513 -7.9032 8.7460 46 1 1.4737 -6.6669 7.7448 47 1 3.3239 -1.8784 7.0514 48 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_6580494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:22:17 Heat of formation + Delta-G solvation = -0.291466 kcal Electronic energy + Delta-G solvation = -26618.541502 eV Core-core repulsion = 22763.336857 eV Total energy + Delta-G solvation = -3855.204645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 356.147 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.54338 -40.85901 -40.01571 -37.67383 -36.49083 -34.48461 -32.45125 -32.14556 -31.84406 -31.16840 -29.47063 -28.29777 -28.29584 -27.95166 -26.26859 -23.81104 -23.46497 -22.73003 -21.56728 -21.23982 -19.81707 -19.56816 -18.52847 -17.32188 -17.10297 -16.92748 -16.33051 -16.19047 -16.03189 -15.97591 -15.25739 -15.11728 -14.83510 -14.59462 -14.51426 -14.44860 -14.21280 -14.13046 -13.90710 -13.89624 -13.83352 -13.72196 -13.56983 -13.17714 -13.17377 -12.99825 -12.74248 -12.65651 -12.42023 -12.25258 -12.01862 -12.01702 -11.95182 -11.63935 -11.44212 -10.81770 -10.65752 -10.50201 -10.40190 -10.12043 -10.11079 -9.57061 -9.28701 -0.34527 0.24668 0.26043 1.08715 1.36275 1.46775 1.50996 1.52828 1.63335 1.68799 1.92979 2.00087 2.13918 2.22703 2.37623 2.39863 2.46272 2.95438 3.32007 3.43268 3.72335 3.75721 3.80639 3.84398 3.87515 4.19067 4.22300 4.24387 4.26358 4.44359 4.55319 4.57263 4.78385 4.82405 4.82708 4.85522 4.88460 4.88524 4.90528 4.91202 4.92863 5.03069 5.10669 5.15649 5.34696 5.39338 5.55349 5.57481 5.67038 5.67263 5.73188 5.76077 6.22035 6.40067 6.54700 6.74184 6.95352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.203 2.797 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.389 4.389 6 C -0.192 4.192 7 C -0.007 4.007 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.101 4.101 11 C 0.165 3.835 12 N -0.713 5.713 13 C 0.593 3.407 14 O -0.567 6.567 15 C -0.066 4.066 16 C -0.114 4.114 17 C -0.222 4.222 18 C 0.070 3.930 19 C -0.065 4.065 20 O -0.565 6.565 21 Si 1.002 2.998 22 H -0.248 1.248 23 H -0.257 1.257 24 H -0.273 1.273 25 N -0.510 5.510 26 C -0.096 4.096 27 C -0.108 4.108 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.408 0.592 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.107 0.893 45 H 0.405 0.595 46 H 0.429 0.571 47 H 0.145 0.855 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 -0.539 -6.330 8.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.384 2.616 3 C -0.571 4.571 4 C -0.570 4.570 5 C -0.420 4.420 6 C -0.192 4.192 7 C -0.007 4.007 8 C -0.126 4.126 9 C -0.113 4.113 10 C -0.102 4.102 11 C 0.043 3.957 12 N -0.365 5.365 13 C 0.381 3.619 14 O -0.446 6.446 15 C -0.179 4.179 16 C -0.140 4.140 17 C -0.246 4.246 18 C -0.050 4.050 19 C -0.175 4.175 20 O -0.375 6.375 21 Si 0.824 3.176 22 H -0.172 1.172 23 H -0.181 1.181 24 H -0.198 1.198 25 N -0.107 5.107 26 C -0.114 4.114 27 C -0.126 4.126 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.244 0.756 42 H 0.167 0.833 43 H 0.174 0.826 44 H 0.124 0.876 45 H 0.256 0.744 46 H 0.269 0.731 47 H 0.163 0.837 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.049 -0.669 -5.175 7.261 hybrid contribution -0.461 0.150 -0.518 0.710 sum -5.510 -0.519 -5.693 7.940 Atomic orbital electron populations 1.26221 1.20414 1.04916 1.05372 0.76257 0.64933 0.63264 0.57106 1.26243 1.06547 1.18935 1.05361 1.26221 1.06578 1.08545 1.15617 1.37501 0.99114 1.00335 1.05042 1.21574 1.01158 1.00194 0.96316 1.16525 0.98945 0.95227 0.90048 1.21393 0.97097 0.94151 0.99929 1.21221 0.98909 1.00154 0.90980 1.19906 0.99730 0.96333 0.94193 1.20211 0.91309 0.90643 0.93584 1.45820 1.22678 1.39083 1.28914 1.17130 0.85021 0.79645 0.80084 1.90849 1.27537 1.69589 1.56621 1.20269 0.89752 1.06239 1.01654 1.21446 0.99323 0.96020 0.97258 1.20872 0.96148 1.06349 1.01199 1.20303 0.95110 0.94370 0.95170 1.24578 0.84909 0.97707 1.10285 1.86437 1.21300 1.35380 1.94382 0.84908 0.80412 0.75259 0.77006 1.17183 1.18136 1.19805 1.41845 1.13805 1.30249 1.24848 1.21218 0.96351 0.94591 0.99222 1.21388 0.99884 1.00387 0.90976 0.91222 0.89251 0.91190 0.91325 0.89243 0.91246 0.91144 0.89255 0.91253 0.84713 0.83529 0.90042 0.90231 0.75619 0.83333 0.82647 0.87558 0.74374 0.73139 0.83720 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.45 8.65 113.37 0.98 3.43 16 2 Si 1.20 -7.31 14.26 68.60 0.98 -6.34 16 3 C -0.46 2.25 8.65 113.37 0.98 3.24 16 4 C -0.46 2.43 8.65 113.37 0.98 3.41 16 5 C -0.39 -1.39 12.14 74.32 0.90 -0.48 16 6 C -0.19 -1.45 13.24 30.02 0.40 -1.05 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 8 C -0.11 -0.28 9.75 22.52 0.22 -0.06 16 9 C -0.09 0.04 9.68 22.23 0.22 0.25 16 10 C -0.10 0.05 5.25 -19.81 -0.10 -0.06 16 11 C 0.17 0.07 5.79 85.63 0.50 0.57 16 12 N -0.71 -0.36 5.54 -470.82 -2.61 -2.97 16 13 C 0.59 4.35 7.79 86.45 0.67 5.03 16 14 O -0.57 -8.72 16.88 -4.30 -0.07 -8.79 16 15 C -0.07 -0.37 7.06 40.35 0.28 -0.09 16 16 C -0.11 -0.80 10.65 22.57 0.24 -0.56 16 17 C -0.22 -0.88 9.32 22.01 0.21 -0.67 16 18 C 0.07 0.09 6.51 41.34 0.27 0.36 16 19 C -0.07 0.31 3.07 71.24 0.22 0.52 16 20 O -0.57 2.39 12.86 -148.98 -1.92 0.48 16 21 Si 1.00 -3.92 25.82 68.60 1.77 -2.15 16 22 H -0.25 1.24 7.11 99.48 0.71 1.95 16 23 H -0.26 0.52 7.11 99.48 0.71 1.23 16 24 H -0.27 -0.27 7.11 99.48 0.71 0.44 16 25 N -0.51 -0.16 5.99 -171.94 -1.03 -1.19 16 26 C -0.10 0.00 9.68 22.23 0.22 0.21 16 27 C -0.11 -0.32 9.75 22.52 0.22 -0.10 16 28 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 29 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 30 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 31 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 32 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 35 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 36 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 37 H 0.13 0.08 8.06 -2.91 -0.02 0.05 16 38 H 0.15 -0.58 8.06 -2.91 -0.02 -0.60 16 39 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16 40 H 0.08 0.13 8.08 -2.39 -0.02 0.11 16 41 H 0.41 -1.75 7.59 -92.71 -0.70 -2.45 16 42 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.16 0.14 6.17 -2.91 -0.02 0.13 16 44 H 0.11 -1.05 7.96 -2.39 -0.02 -1.07 16 45 H 0.40 -5.37 8.74 -74.06 -0.65 -6.02 16 46 H 0.43 -2.27 8.19 -92.70 -0.76 -3.03 16 47 H 0.15 -0.45 8.06 -2.91 -0.02 -0.48 16 48 H 0.13 0.14 8.06 -2.91 -0.02 0.12 16 Total: 0.00 -23.59 420.83 4.04 -19.55 By element: Atomic # 1 Polarization: -12.01 SS G_CDS: -0.35 Total: -12.36 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 7.27 Total: 13.78 kcal Atomic # 7 Polarization: -0.52 SS G_CDS: -3.64 Total: -4.16 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -1.99 Total: -8.31 kcal Atomic # 14 Polarization: -11.23 SS G_CDS: 2.75 Total: -8.48 kcal Total: -23.59 4.04 -19.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_6580494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.256 kcal (2) G-P(sol) polarization free energy of solvation -23.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds