Wall clock time and date at job start Sun Mar 7 2021 04:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33815 * 122.44410 * 2 1 4 4 C 1.50695 * 124.52695 * 359.95766 * 3 2 1 5 5 O 1.42901 * 109.46949 * 113.32685 * 4 3 2 6 6 Si 1.86298 * 109.47246 * 233.32521 * 4 3 2 7 7 H 1.48494 * 109.47110 * 60.00242 * 6 4 3 8 8 H 1.48502 * 109.46854 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47180 * 300.00044 * 6 4 3 10 10 S 1.70623 * 110.95172 * 179.97438 * 3 2 1 11 11 C 1.75834 * 91.56135 * 0.02562 * 10 3 2 12 12 C 1.46586 * 125.45631 * 179.97438 * 11 10 3 13 13 O 1.21704 * 119.99869 * 180.02562 * 12 11 10 14 14 N 1.34778 * 120.00078 * 0.02562 * 12 11 10 15 15 C 1.46500 * 120.00123 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47217 * 180.02562 * 15 14 12 17 17 C 1.38348 * 119.85288 * 90.00011 * 16 15 14 18 18 C 1.37971 * 120.13714 * 180.02562 * 17 16 15 19 19 C 1.39533 * 119.85936 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.14417 * 179.97438 * 19 18 17 21 21 C 9.30406 * 165.15484 * 359.92406 * 10 1 2 22 22 Si 9.37187 * 147.77652 * 0.05448 * 14 1 2 23 23 C 1.86304 * 109.47130 * 257.40159 * 22 21 20 24 24 C 1.86307 * 109.47029 * 17.39907 * 22 21 20 25 25 C 1.86300 * 109.47395 * 137.40172 * 22 21 20 26 26 C 1.39537 * 119.71695 * 0.25348 * 19 18 17 27 27 C 1.37969 * 119.85642 * 359.51084 * 26 19 18 28 28 C 1.36641 * 109.08315 * 0.24080 * 11 10 3 29 29 H 1.08995 * 109.47087 * 84.89773 * 1 2 3 30 30 H 1.08997 * 109.46728 * 204.89290 * 1 2 3 31 31 H 1.08991 * 109.46990 * 324.89280 * 1 2 3 32 32 H 1.08995 * 109.47359 * 353.32942 * 4 3 2 33 33 H 0.96701 * 114.00180 * 60.00216 * 5 4 3 34 34 H 0.97002 * 119.99779 * 0.02562 * 14 12 11 35 35 H 1.09008 * 109.46787 * 60.00266 * 15 14 12 36 36 H 1.08992 * 109.47307 * 300.00311 * 15 14 12 37 37 H 1.07995 * 119.93061 * 0.02826 * 17 16 15 38 38 H 1.08007 * 120.06816 * 179.97438 * 18 17 16 39 39 H 1.08997 * 109.46924 * 59.99535 * 23 22 21 40 40 H 1.08997 * 109.47384 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.46808 * 299.99987 * 23 22 21 42 42 H 1.08996 * 109.47218 * 60.00201 * 24 22 21 43 43 H 1.09007 * 109.46747 * 180.02562 * 24 22 21 44 44 H 1.08999 * 109.47086 * 299.99722 * 24 22 21 45 45 H 1.08994 * 109.46916 * 59.99595 * 25 22 21 46 46 H 1.08996 * 109.47341 * 180.02562 * 25 22 21 47 47 H 1.09008 * 109.46740 * 300.00205 * 25 22 21 48 48 H 1.08001 * 120.06960 * 179.72600 * 26 19 18 49 49 H 1.07999 * 119.93466 * 180.23844 * 27 26 19 50 50 H 1.08004 * 123.34864 * 179.76205 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6354 2.5161 -0.0009 5 8 1.9393 3.1637 1.2362 6 14 2.3588 3.4975 -1.4096 7 1 2.0430 2.8247 -2.6951 8 1 1.7783 4.8644 -1.4100 9 1 3.8322 3.5860 -1.2460 10 16 3.8970 0.7893 0.0007 11 6 3.5937 -0.9427 0.0002 12 6 4.6232 -1.9862 0.0000 13 8 4.3002 -3.1596 -0.0008 14 7 5.9274 -1.6461 0.0006 15 6 6.9563 -2.6890 -0.0002 16 6 8.3205 -2.0488 0.0014 17 6 8.9433 -1.7578 1.2020 18 6 10.1920 -1.1712 1.2103 19 6 10.8270 -0.8719 0.0045 20 6 12.1229 -0.2625 0.0060 21 6 13.1847 0.2384 0.0034 22 14 14.9039 1.0473 0.0044 23 6 15.3019 1.6580 1.7189 24 6 16.1797 -0.2048 -0.5206 25 6 14.9159 2.4819 -1.1842 26 6 10.1914 -1.1636 -1.2030 27 6 8.9447 -1.7547 -1.1977 28 6 2.2447 -1.1600 -0.0059 29 1 -0.3633 0.0914 -1.0235 30 1 -0.3633 -0.9322 0.4326 31 1 -0.3633 0.8406 0.5910 32 1 0.5541 2.4512 -0.1209 33 1 2.8862 3.2562 1.4095 34 1 6.1848 -0.7109 0.0016 35 1 6.8459 -3.3076 -0.8910 36 1 6.8455 -3.3095 0.8890 37 1 8.4509 -1.9904 2.1347 38 1 10.6770 -0.9441 2.1483 39 1 15.2948 0.8187 2.4142 40 1 16.2879 2.1225 1.7194 41 1 14.5554 2.3906 2.0260 42 1 15.9469 -0.5621 -1.5236 43 1 17.1660 0.2592 -0.5195 44 1 16.1727 -1.0441 0.1749 45 1 14.1695 3.2144 -0.8770 46 1 15.9023 2.9457 -1.1839 47 1 14.6830 2.1246 -2.1873 48 1 10.6757 -0.9303 -2.1397 49 1 8.4533 -1.9845 -2.1315 50 1 1.8021 -2.1451 -0.0111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_6739946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:22:49 Heat of formation + Delta-G solvation = -23.995335 kcal Electronic energy + Delta-G solvation = -28334.362832 eV Core-core repulsion = 24348.944708 eV Total energy + Delta-G solvation = -3985.418124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 387.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.07729 -40.33806 -39.61185 -37.65144 -36.31642 -34.35914 -32.64857 -32.11852 -31.43514 -29.91180 -29.65848 -28.49531 -28.49017 -28.01962 -26.09633 -24.28244 -23.78656 -22.87390 -21.79401 -20.28704 -19.55643 -19.51066 -17.94696 -17.77927 -16.99269 -16.83251 -16.49806 -16.07054 -16.01376 -15.90379 -15.80873 -15.24070 -14.96647 -14.63875 -14.56651 -14.46231 -14.36673 -14.30823 -14.17569 -14.07320 -13.97986 -13.76807 -13.51461 -13.38958 -13.38232 -13.20650 -13.17210 -13.06533 -12.68729 -12.49403 -12.43018 -12.37625 -12.23504 -12.17552 -12.07778 -11.79755 -11.62303 -11.20286 -10.95573 -10.81428 -10.75842 -10.27780 -10.07670 -9.73136 -9.50463 -9.49786 -0.67181 -0.28377 0.25904 0.28698 0.66443 0.92178 1.21718 1.25939 1.34298 1.42864 1.48227 1.56936 1.78974 1.98787 2.15410 2.30844 2.31368 2.39451 3.03551 3.22732 3.45481 3.49653 3.72085 3.74037 3.83092 3.89327 4.06267 4.15984 4.24692 4.27449 4.40267 4.43053 4.56646 4.58520 4.63657 4.63753 4.65160 4.67823 4.68244 4.68556 4.70253 4.79438 4.82991 4.93207 4.94480 5.16882 5.21349 5.23677 5.34338 5.37489 5.39160 5.41886 5.47068 5.47561 5.78704 6.28521 6.30668 6.67213 7.05243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.093 4.093 3 C -0.232 4.232 4 C -0.047 4.047 5 O -0.531 6.531 6 Si 0.920 3.080 7 H -0.241 1.241 8 H -0.235 1.235 9 H -0.237 1.237 10 S 0.185 5.815 11 C -0.257 4.257 12 C 0.593 3.407 13 O -0.523 6.523 14 N -0.724 5.724 15 C 0.162 3.838 16 C -0.107 4.107 17 C -0.097 4.097 18 C -0.098 4.098 19 C 0.015 3.985 20 C -0.145 4.145 21 C -0.388 4.388 22 Si 1.143 2.857 23 C -0.452 4.452 24 C -0.453 4.453 25 C -0.452 4.452 26 C -0.099 4.099 27 C -0.097 4.097 28 C -0.044 4.044 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.375 0.625 34 H 0.400 0.600 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.130 0.870 49 H 0.131 0.869 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 3.872 -0.795 4.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.351 4.351 4 C -0.160 4.160 5 O -0.336 6.336 6 Si 0.739 3.261 7 H -0.163 1.163 8 H -0.158 1.158 9 H -0.160 1.160 10 S 0.454 5.546 11 C -0.377 4.377 12 C 0.379 3.621 13 O -0.401 6.401 14 N -0.376 5.376 15 C 0.040 3.960 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.116 4.116 19 C 0.014 3.986 20 C -0.145 4.145 21 C -0.422 4.422 22 Si 1.329 2.671 23 C -0.560 4.560 24 C -0.560 4.560 25 C -0.560 4.560 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.077 4.077 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.148 0.852 33 H 0.222 0.778 34 H 0.234 0.766 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.147 0.853 49 H 0.149 0.851 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.613 4.355 -1.439 5.839 hybrid contribution -1.057 -0.961 0.338 1.468 sum 2.556 3.394 -1.101 4.389 Atomic orbital electron populations 1.20635 0.88868 1.03694 1.02875 1.18699 0.98253 0.90711 1.02933 1.24451 0.98447 1.01008 1.11226 1.24587 1.05592 0.89604 0.96182 1.86585 1.29472 1.79458 1.38042 0.86097 0.81304 0.81110 0.77591 1.16345 1.15772 1.16030 1.82907 1.03453 0.98976 1.69274 1.24447 0.97994 0.96479 1.18827 1.16915 0.81434 0.87432 0.76309 1.90872 1.81541 1.18058 1.49583 1.45928 1.05138 1.10359 1.76195 1.20257 0.82446 0.89356 1.03982 1.19943 0.96101 1.01026 0.93639 1.21057 0.94760 0.97880 0.97832 1.21258 0.94870 0.98158 0.97352 1.16259 0.89994 0.98496 0.93817 1.20970 0.93959 0.99133 1.00420 1.36091 1.05744 1.00673 0.99688 0.77021 0.57569 0.65181 0.67362 1.26115 1.05575 1.06530 1.17809 1.26120 1.11784 1.11955 1.06188 1.26116 1.04956 1.13815 1.11135 1.21255 0.94899 0.98176 0.97327 1.21054 0.94784 0.97867 0.97846 1.20726 0.90836 1.00157 0.95987 0.90601 0.90801 0.90694 0.85173 0.77820 0.76561 0.89875 0.89874 0.85068 0.85232 0.90896 0.90359 0.90909 0.90904 0.90367 0.90895 0.90909 0.90362 0.90914 0.85251 0.85088 0.82455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.14 9.48 36.01 0.34 0.48 16 2 C -0.09 -0.05 5.78 -106.45 -0.62 -0.67 16 3 C -0.23 -0.02 4.83 -35.86 -0.17 -0.19 16 4 C -0.05 0.05 2.77 36.00 0.10 0.15 16 5 O -0.53 0.13 12.88 -35.23 -0.45 -0.32 16 6 Si 0.92 -1.01 27.41 -169.99 -4.66 -5.67 16 7 H -0.24 0.03 7.11 56.52 0.40 0.43 16 8 H -0.24 0.04 7.11 56.52 0.40 0.44 16 9 H -0.24 0.30 7.11 56.52 0.40 0.71 16 10 S 0.18 -0.08 20.83 -107.50 -2.24 -2.32 16 11 C -0.26 -0.46 6.45 -36.79 -0.24 -0.70 16 12 C 0.59 1.79 7.78 -12.89 -0.10 1.69 16 13 O -0.52 -3.37 16.84 5.19 0.09 -3.28 16 14 N -0.72 -0.36 5.54 -62.83 -0.35 -0.71 16 15 C 0.16 0.02 5.79 -5.19 -0.03 -0.01 16 16 C -0.11 0.02 5.25 -104.54 -0.55 -0.53 16 17 C -0.10 0.01 9.68 -39.64 -0.38 -0.37 16 18 C -0.10 -0.09 9.75 -39.20 -0.38 -0.48 16 19 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 20 C -0.14 -0.44 13.24 -38.83 -0.51 -0.96 16 21 C -0.39 -0.53 12.14 29.55 0.36 -0.18 16 22 Si 1.14 -3.27 14.26 -169.99 -2.42 -5.69 16 23 C -0.45 1.05 8.65 101.05 0.87 1.93 16 24 C -0.45 1.00 8.65 101.05 0.87 1.88 16 25 C -0.45 1.05 8.65 101.05 0.87 1.93 16 26 C -0.10 -0.10 9.75 -39.20 -0.38 -0.48 16 27 C -0.10 0.01 9.68 -39.64 -0.38 -0.37 16 28 C -0.04 -0.07 9.78 -40.44 -0.40 -0.47 16 29 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 30 H 0.07 -0.13 8.10 -51.93 -0.42 -0.55 16 31 H 0.07 -0.12 7.00 -51.93 -0.36 -0.49 16 32 H 0.13 -0.26 6.25 -51.93 -0.32 -0.59 16 33 H 0.37 -1.23 8.70 45.56 0.40 -0.83 16 34 H 0.40 -0.43 7.58 -40.82 -0.31 -0.74 16 35 H 0.08 0.03 8.08 -51.92 -0.42 -0.39 16 36 H 0.08 0.03 8.08 -51.93 -0.42 -0.39 16 37 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 38 H 0.13 -0.02 8.06 -52.48 -0.42 -0.44 16 39 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 40 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 41 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 42 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 43 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 44 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 45 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 46 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 47 H 0.07 -0.15 7.96 -51.92 -0.41 -0.56 16 48 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 49 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 50 H 0.16 0.19 8.06 -52.48 -0.42 -0.23 16 LS Contribution 446.82 15.07 6.73 6.73 Total: 0.00 -8.28 446.82 -11.56 -19.84 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: -6.92 Total: -10.66 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.34 Total: 2.07 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -0.35 Total: -0.71 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -0.37 Total: -3.60 kcal Atomic # 14 Polarization: -4.28 SS G_CDS: -7.08 Total: -11.36 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.24 Total: -2.32 kcal Total LS contribution 6.73 Total: 6.73 kcal Total: -8.28 -11.56 -19.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_6739946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.156 kcal (2) G-P(sol) polarization free energy of solvation -8.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds