Wall clock time and date at job start Sun Mar 7 2021 04:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33815 * 122.44410 * 2 1 4 4 C 1.50695 * 124.52695 * 359.95766 * 3 2 1 5 5 O 1.42901 * 109.46949 * 113.32685 * 4 3 2 6 6 Si 1.86298 * 109.47246 * 233.32521 * 4 3 2 7 7 H 1.48494 * 109.47110 * 60.00242 * 6 4 3 8 8 H 1.48502 * 109.46854 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47180 * 300.00044 * 6 4 3 10 10 S 1.70623 * 110.95172 * 179.97438 * 3 2 1 11 11 C 1.75834 * 91.56135 * 0.02562 * 10 3 2 12 12 C 1.46586 * 125.45631 * 179.97438 * 11 10 3 13 13 O 1.21704 * 119.99869 * 180.02562 * 12 11 10 14 14 N 1.34778 * 120.00078 * 0.02562 * 12 11 10 15 15 C 1.46500 * 120.00123 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47217 * 180.02562 * 15 14 12 17 17 C 1.38348 * 119.85288 * 90.00011 * 16 15 14 18 18 C 1.37971 * 120.13714 * 180.02562 * 17 16 15 19 19 C 1.39533 * 119.85936 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.14417 * 179.97438 * 19 18 17 21 21 C 9.30406 * 165.15484 * 359.92406 * 10 1 2 22 22 Si 9.37187 * 147.77652 * 0.05448 * 14 1 2 23 23 C 1.86304 * 109.47130 * 257.40159 * 22 21 20 24 24 C 1.86307 * 109.47029 * 17.39907 * 22 21 20 25 25 C 1.86300 * 109.47395 * 137.40172 * 22 21 20 26 26 C 1.39537 * 119.71695 * 0.25348 * 19 18 17 27 27 C 1.37969 * 119.85642 * 359.51084 * 26 19 18 28 28 C 1.36641 * 109.08315 * 0.24080 * 11 10 3 29 29 H 1.08995 * 109.47087 * 84.89773 * 1 2 3 30 30 H 1.08997 * 109.46728 * 204.89290 * 1 2 3 31 31 H 1.08991 * 109.46990 * 324.89280 * 1 2 3 32 32 H 1.08995 * 109.47359 * 353.32942 * 4 3 2 33 33 H 0.96701 * 114.00180 * 60.00216 * 5 4 3 34 34 H 0.97002 * 119.99779 * 0.02562 * 14 12 11 35 35 H 1.09008 * 109.46787 * 60.00266 * 15 14 12 36 36 H 1.08992 * 109.47307 * 300.00311 * 15 14 12 37 37 H 1.07995 * 119.93061 * 0.02826 * 17 16 15 38 38 H 1.08007 * 120.06816 * 179.97438 * 18 17 16 39 39 H 1.08997 * 109.46924 * 59.99535 * 23 22 21 40 40 H 1.08997 * 109.47384 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.46808 * 299.99987 * 23 22 21 42 42 H 1.08996 * 109.47218 * 60.00201 * 24 22 21 43 43 H 1.09007 * 109.46747 * 180.02562 * 24 22 21 44 44 H 1.08999 * 109.47086 * 299.99722 * 24 22 21 45 45 H 1.08994 * 109.46916 * 59.99595 * 25 22 21 46 46 H 1.08996 * 109.47341 * 180.02562 * 25 22 21 47 47 H 1.09008 * 109.46740 * 300.00205 * 25 22 21 48 48 H 1.08001 * 120.06960 * 179.72600 * 26 19 18 49 49 H 1.07999 * 119.93466 * 180.23844 * 27 26 19 50 50 H 1.08004 * 123.34864 * 179.76205 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6354 2.5161 -0.0009 5 8 1.9393 3.1637 1.2362 6 14 2.3588 3.4975 -1.4096 7 1 2.0430 2.8247 -2.6951 8 1 1.7783 4.8644 -1.4100 9 1 3.8322 3.5860 -1.2460 10 16 3.8970 0.7893 0.0007 11 6 3.5937 -0.9427 0.0002 12 6 4.6232 -1.9862 0.0000 13 8 4.3002 -3.1596 -0.0008 14 7 5.9274 -1.6461 0.0006 15 6 6.9563 -2.6890 -0.0002 16 6 8.3205 -2.0488 0.0014 17 6 8.9433 -1.7578 1.2020 18 6 10.1920 -1.1712 1.2103 19 6 10.8270 -0.8719 0.0045 20 6 12.1229 -0.2625 0.0060 21 6 13.1847 0.2384 0.0034 22 14 14.9039 1.0473 0.0044 23 6 15.3019 1.6580 1.7189 24 6 16.1797 -0.2048 -0.5206 25 6 14.9159 2.4819 -1.1842 26 6 10.1914 -1.1636 -1.2030 27 6 8.9447 -1.7547 -1.1977 28 6 2.2447 -1.1600 -0.0059 29 1 -0.3633 0.0914 -1.0235 30 1 -0.3633 -0.9322 0.4326 31 1 -0.3633 0.8406 0.5910 32 1 0.5541 2.4512 -0.1209 33 1 2.8862 3.2562 1.4095 34 1 6.1848 -0.7109 0.0016 35 1 6.8459 -3.3076 -0.8910 36 1 6.8455 -3.3095 0.8890 37 1 8.4509 -1.9904 2.1347 38 1 10.6770 -0.9441 2.1483 39 1 15.2948 0.8187 2.4142 40 1 16.2879 2.1225 1.7194 41 1 14.5554 2.3906 2.0260 42 1 15.9469 -0.5621 -1.5236 43 1 17.1660 0.2592 -0.5195 44 1 16.1727 -1.0441 0.1749 45 1 14.1695 3.2144 -0.8770 46 1 15.9023 2.9457 -1.1839 47 1 14.6830 2.1246 -2.1873 48 1 10.6757 -0.9303 -2.1397 49 1 8.4533 -1.9845 -2.1315 50 1 1.8021 -2.1451 -0.0111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_6739946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:22:48 Heat of formation + Delta-G solvation = -16.143092 kcal Electronic energy + Delta-G solvation = -28334.022334 eV Core-core repulsion = 24348.944708 eV Total energy + Delta-G solvation = -3985.077626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 387.124 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.21020 -40.38883 -39.65500 -37.61585 -36.45914 -34.46572 -32.69310 -32.13288 -31.49441 -29.84242 -29.46532 -28.29171 -28.28929 -28.07217 -26.10300 -24.30606 -23.79894 -22.91496 -21.92407 -20.29064 -19.60339 -19.55046 -17.96117 -17.79089 -17.09178 -16.91554 -16.51256 -16.13049 -16.02440 -15.91077 -15.80584 -15.31573 -14.93500 -14.62757 -14.55871 -14.47258 -14.34484 -14.18760 -14.12407 -13.91576 -13.84497 -13.82589 -13.45737 -13.19194 -13.17017 -13.16735 -13.02339 -12.99154 -12.68450 -12.46081 -12.40309 -12.37615 -12.23704 -12.20553 -12.00944 -11.76257 -11.62788 -11.43290 -10.81149 -10.77023 -10.64894 -10.42425 -10.09761 -9.75893 -9.56124 -9.47944 -0.74315 -0.33547 0.23793 0.26822 0.64540 0.96808 1.19661 1.34118 1.37275 1.48049 1.51914 1.69614 1.85412 1.97596 1.99419 2.38485 2.39267 2.46954 2.96514 3.34664 3.42510 3.55278 3.66241 3.73177 3.81093 3.88800 4.05560 4.21565 4.22664 4.27286 4.43894 4.50571 4.54962 4.56017 4.76165 4.79167 4.82717 4.83076 4.83333 4.86183 4.89037 4.89211 4.91865 4.94193 4.98199 5.08648 5.16366 5.27987 5.35894 5.37780 5.40210 5.58090 5.67614 5.67931 5.77234 6.20779 6.50022 6.55873 6.89339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.103 4.103 3 C -0.236 4.236 4 C -0.046 4.046 5 O -0.543 6.543 6 Si 0.944 3.056 7 H -0.254 1.254 8 H -0.248 1.248 9 H -0.232 1.232 10 S 0.223 5.777 11 C -0.281 4.281 12 C 0.592 3.408 13 O -0.565 6.565 14 N -0.712 5.712 15 C 0.165 3.835 16 C -0.103 4.103 17 C -0.095 4.095 18 C -0.108 4.108 19 C -0.007 4.007 20 C -0.192 4.192 21 C -0.389 4.389 22 Si 1.202 2.798 23 C -0.462 4.462 24 C -0.463 4.463 25 C -0.462 4.462 26 C -0.108 4.108 27 C -0.095 4.095 28 C -0.052 4.052 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.387 0.613 34 H 0.408 0.592 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.147 0.853 38 H 0.135 0.865 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.135 0.865 49 H 0.147 0.853 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 5.030 -0.755 6.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 C -0.355 4.355 4 C -0.158 4.158 5 O -0.350 6.350 6 Si 0.764 3.236 7 H -0.178 1.178 8 H -0.171 1.171 9 H -0.155 1.155 10 S 0.493 5.507 11 C -0.401 4.401 12 C 0.379 3.621 13 O -0.446 6.446 14 N -0.364 5.364 15 C 0.042 3.958 16 C -0.104 4.104 17 C -0.113 4.113 18 C -0.126 4.126 19 C -0.007 4.007 20 C -0.192 4.192 21 C -0.420 4.420 22 Si 1.384 2.616 23 C -0.570 4.570 24 C -0.571 4.571 25 C -0.569 4.569 26 C -0.126 4.126 27 C -0.113 4.113 28 C -0.086 4.086 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.158 0.842 33 H 0.236 0.764 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.153 0.847 49 H 0.164 0.836 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.105 5.528 -1.392 7.025 hybrid contribution -1.165 -1.266 0.323 1.750 sum 2.940 4.262 -1.069 5.287 Atomic orbital electron populations 1.20693 0.87691 1.04056 1.03683 1.18865 0.99243 0.90386 1.03111 1.24717 0.98866 1.01474 1.10489 1.24661 1.06318 0.88800 0.96027 1.86561 1.30824 1.79410 1.38229 0.85763 0.81303 0.79926 0.76607 1.17788 1.17131 1.15521 1.82686 1.02933 0.96785 1.68315 1.24456 0.97877 0.97707 1.20059 1.17113 0.82164 0.87117 0.75675 1.90841 1.82236 1.19717 1.51837 1.45862 1.04540 1.10979 1.75001 1.20243 0.82343 0.89236 1.03945 1.19916 0.95818 1.00915 0.93730 1.21227 0.94352 0.97182 0.98538 1.21391 0.95338 0.98519 0.97319 1.16527 0.90269 0.99212 0.94717 1.21569 0.95049 1.00531 1.02006 1.37488 1.06501 0.99810 0.98231 0.76266 0.54926 0.63901 0.66527 1.26221 1.06181 1.06506 1.18047 1.26241 1.12757 1.12158 1.05906 1.26219 1.05524 1.14080 1.11103 1.21390 0.95370 0.98542 0.97296 1.21225 0.94375 0.97165 0.98561 1.20841 0.91091 1.00514 0.96129 0.89563 0.90610 0.90150 0.84165 0.76429 0.75542 0.89946 0.89974 0.83549 0.84698 0.91227 0.89265 0.91168 0.91252 0.89253 0.91313 0.91194 0.89261 0.91204 0.84714 0.83551 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.30 9.48 71.24 0.68 0.97 16 2 C -0.10 -0.12 5.78 -21.05 -0.12 -0.24 16 3 C -0.24 0.07 4.83 24.68 0.12 0.19 16 4 C -0.05 0.12 2.77 71.23 0.20 0.32 16 5 O -0.54 0.78 12.88 -148.98 -1.92 -1.14 16 6 Si 0.94 -2.62 27.41 68.60 1.88 -0.74 16 7 H -0.25 0.12 7.11 99.48 0.71 0.83 16 8 H -0.25 0.14 7.11 99.48 0.71 0.85 16 9 H -0.23 0.87 7.11 99.48 0.71 1.57 16 10 S 0.22 -0.28 20.83 -56.49 -1.18 -1.45 16 11 C -0.28 -1.17 6.45 24.08 0.16 -1.02 16 12 C 0.59 4.14 7.78 86.42 0.67 4.81 16 13 O -0.57 -8.20 16.84 -4.36 -0.07 -8.28 16 14 N -0.71 -0.95 5.54 -470.90 -2.61 -3.56 16 15 C 0.16 0.09 5.79 85.63 0.50 0.59 16 16 C -0.10 0.02 5.25 -19.81 -0.10 -0.08 16 17 C -0.09 0.00 9.68 22.23 0.22 0.22 16 18 C -0.11 -0.31 9.75 22.52 0.22 -0.09 16 19 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 20 C -0.19 -1.45 13.24 30.02 0.40 -1.05 16 21 C -0.39 -1.41 12.14 74.32 0.90 -0.51 16 22 Si 1.20 -7.20 14.26 68.60 0.98 -6.22 16 23 C -0.46 2.38 8.65 113.37 0.98 3.36 16 24 C -0.46 2.23 8.65 113.37 0.98 3.21 16 25 C -0.46 2.40 8.65 113.37 0.98 3.38 16 26 C -0.11 -0.31 9.75 22.52 0.22 -0.09 16 27 C -0.09 0.00 9.68 22.23 0.22 0.22 16 28 C -0.05 -0.21 9.78 21.71 0.21 0.00 16 29 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.07 -0.25 8.10 -2.39 -0.02 -0.27 16 31 H 0.08 -0.32 7.00 -2.39 -0.02 -0.34 16 32 H 0.14 -0.69 6.25 -2.39 -0.01 -0.71 16 33 H 0.39 -2.93 8.70 -74.06 -0.64 -3.57 16 34 H 0.41 -0.94 7.58 -92.71 -0.70 -1.64 16 35 H 0.08 0.09 8.08 -2.38 -0.02 0.08 16 36 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16 37 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 38 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 39 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 40 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 41 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 42 H 0.07 -0.27 7.96 -2.39 -0.02 -0.28 16 43 H 0.09 -0.62 7.96 -2.38 -0.02 -0.63 16 44 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 45 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 46 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 47 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 48 H 0.13 0.11 8.06 -2.91 -0.02 0.09 16 49 H 0.15 -0.52 8.06 -2.91 -0.02 -0.55 16 50 H 0.15 0.64 8.06 -2.91 -0.02 0.61 16 Total: 0.00 -19.76 446.82 4.75 -15.02 By element: Atomic # 1 Polarization: -8.04 SS G_CDS: 0.38 Total: -7.66 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 7.29 Total: 14.04 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -2.61 Total: -3.56 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -1.99 Total: -9.42 kcal Atomic # 14 Polarization: -9.82 SS G_CDS: 2.86 Total: -6.96 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.18 Total: -1.45 kcal Total: -19.76 4.75 -15.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_6739946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.127 kcal (2) G-P(sol) polarization free energy of solvation -19.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds