Wall clock time and date at job start Sun Mar 7 2021 04:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86303 * 109.46936 * 2 1 4 4 C 1.86293 * 109.46977 * 239.99987 * 2 1 3 5 5 C 1.89999 * 109.46936 * 119.99839 * 2 1 3 6 6 C 3.07404 * 109.46876 * 119.99837 * 2 1 3 7 7 C 4.50603 * 109.46959 * 119.99849 * 2 1 3 8 8 C 1.39536 * 120.14002 * 6.04561 * 7 6 5 9 9 C 1.37977 * 119.85504 * 180.02562 * 8 7 6 10 10 C 1.38345 * 120.13834 * 0.02688 * 9 8 7 11 11 C 1.50703 * 119.85696 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47138 * 89.99958 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.28062 * 12 11 10 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 11 15 15 C 1.47191 * 119.99772 * 179.72411 * 13 12 11 16 16 C 1.36011 * 123.46169 * 0.02562 * 15 13 12 17 17 S 1.70447 * 110.81726 * 179.97438 * 16 15 13 18 18 C 1.75500 * 92.44366 * 0.02562 * 17 16 15 19 19 C 1.50702 * 124.70814 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47024 * 120.02732 * 19 18 17 21 21 Si 1.86296 * 109.47454 * 0.02623 * 19 18 17 22 22 H 1.48504 * 109.46962 * 59.99639 * 21 19 18 23 23 H 1.48495 * 109.47501 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47338 * 300.00138 * 21 19 18 25 25 C 1.32770 * 110.57649 * 359.73758 * 18 17 16 26 26 C 1.38343 * 120.28842 * 0.25122 * 10 9 8 27 27 C 1.37970 * 120.14380 * 359.44890 * 26 10 9 28 28 H 1.08996 * 109.47165 * 300.00206 * 1 2 3 29 29 H 1.09004 * 109.46732 * 60.00356 * 1 2 3 30 30 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46649 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47119 * 299.99406 * 3 2 1 33 33 H 1.08996 * 109.47362 * 59.99915 * 3 2 1 34 34 H 1.09003 * 109.47044 * 299.99701 * 4 2 1 35 35 H 1.08997 * 109.47382 * 60.00414 * 4 2 1 36 36 H 1.09001 * 109.47197 * 180.02562 * 4 2 1 37 37 H 1.07995 * 120.07531 * 0.02562 * 8 7 6 38 38 H 1.07991 * 119.93008 * 180.02562 * 9 8 7 39 39 H 1.09009 * 109.46601 * 329.99861 * 11 10 9 40 40 H 1.08998 * 109.47035 * 210.00368 * 11 10 9 41 41 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 42 42 H 1.08003 * 124.59167 * 0.02562 * 16 15 13 43 43 H 1.09004 * 109.47035 * 240.02293 * 19 18 17 44 44 H 0.96698 * 113.99979 * 300.00492 * 20 19 18 45 45 H 1.07998 * 123.45778 * 180.25063 * 25 18 17 46 46 H 1.08005 * 119.92853 * 179.70539 * 26 10 9 47 47 H 1.07999 * 120.08166 * 180.25529 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4963 -0.8956 1.5514 6 6 2.8876 -1.4491 2.5100 7 6 3.3649 -2.1241 3.6792 8 6 2.6786 -3.2319 4.1779 9 6 3.1435 -3.8776 5.3052 10 6 4.2871 -3.4284 5.9411 11 6 4.7888 -4.1380 7.1723 12 7 5.7185 -5.1997 6.7792 13 6 6.2921 -5.9756 7.7202 14 8 6.0418 -5.7911 8.8961 15 6 7.2216 -7.0463 7.3248 16 6 7.5515 -7.3137 6.0327 17 16 8.6495 -8.6145 5.9447 18 6 8.6714 -8.8121 7.6884 19 6 9.4798 -9.8494 8.4244 20 8 10.3874 -9.2006 9.3172 21 14 10.4394 -10.8732 7.1990 22 1 11.3510 -9.9929 6.4248 23 1 11.2364 -11.8950 7.9242 24 1 9.4962 -11.5475 6.2711 25 6 7.8808 -7.9175 8.2693 26 6 4.9688 -2.3271 5.4550 27 6 4.5180 -1.6763 4.3251 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5740 1.7564 -0.0005 32 1 2.1207 2.2703 -0.8901 33 1 2.1207 2.2703 0.8899 34 1 2.1206 -1.9059 -1.5210 35 1 2.1207 -0.3644 -2.4111 36 1 3.5740 -0.8786 -1.5209 37 1 1.7855 -3.5833 3.6827 38 1 2.6135 -4.7353 5.6920 39 1 3.9461 -4.5734 7.7095 40 1 5.3025 -3.4259 7.8181 41 1 5.9179 -5.3471 5.8414 42 1 7.1702 -6.7743 5.1783 43 1 8.8106 -10.4955 8.9926 44 1 11.0139 -8.6083 8.8794 45 1 7.7428 -7.8500 9.3383 46 1 5.8583 -1.9785 5.9588 47 1 5.0533 -0.8192 3.9441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_6894386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:26:28 Heat of formation + Delta-G solvation = -18.536893 kcal Electronic energy + Delta-G solvation = -26118.524661 eV Core-core repulsion = 22288.880852 eV Total energy + Delta-G solvation = -3829.643810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 373.108 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12118 -40.29263 -38.81282 -37.13003 -36.28547 -34.35210 -32.21787 -32.11907 -31.14955 -29.66149 -28.49943 -28.49554 -27.68063 -26.98398 -25.19123 -23.78589 -22.91948 -22.00439 -20.54886 -19.53447 -19.12707 -18.14862 -17.87485 -16.90557 -16.80320 -16.39272 -16.32706 -16.04875 -15.80795 -15.78127 -15.25777 -14.58191 -14.54524 -14.46466 -14.38272 -14.31125 -14.15780 -14.08729 -13.98313 -13.96568 -13.66037 -13.39622 -13.39072 -13.34641 -13.17698 -12.72244 -12.65245 -12.42566 -12.38051 -12.26418 -12.17977 -12.07856 -11.83464 -11.62677 -11.04034 -10.89258 -10.76169 -10.64653 -10.20914 -10.07797 -10.00587 -9.52950 -9.49985 -0.39286 -0.28112 0.27990 0.28398 0.62549 0.88803 1.04081 1.31233 1.33789 1.42589 1.48599 1.56402 1.81105 2.04101 2.30385 2.30828 2.35960 2.42855 3.03350 3.30448 3.47379 3.57497 3.74591 3.81957 3.83047 3.89296 3.96346 4.25729 4.26072 4.27602 4.46027 4.59375 4.61889 4.63159 4.63330 4.67385 4.67861 4.68023 4.69539 4.69945 4.83727 4.93198 5.02612 5.16891 5.21322 5.30734 5.37029 5.39041 5.42494 5.46555 5.47144 5.78739 6.41554 6.42472 6.66683 7.18295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.142 2.858 3 C -0.452 4.452 4 C -0.452 4.452 5 C -0.388 4.388 6 C -0.145 4.145 7 C 0.014 3.986 8 C -0.099 4.099 9 C -0.098 4.098 10 C -0.105 4.105 11 C 0.162 3.838 12 N -0.723 5.723 13 C 0.578 3.422 14 O -0.530 6.530 15 C -0.155 4.155 16 C -0.202 4.202 17 S 0.179 5.821 18 C -0.243 4.243 19 C -0.038 4.038 20 O -0.532 6.532 21 Si 0.892 3.108 22 H -0.234 1.234 23 H -0.225 1.225 24 H -0.232 1.232 25 C -0.050 4.050 26 C -0.098 4.098 27 C -0.099 4.099 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.400 0.600 42 H 0.171 0.829 43 H 0.128 0.872 44 H 0.378 0.622 45 H 0.160 0.840 46 H 0.131 0.869 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 0.452 -6.277 6.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.328 2.672 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.422 4.422 6 C -0.145 4.145 7 C 0.013 3.987 8 C -0.117 4.117 9 C -0.116 4.116 10 C -0.105 4.105 11 C 0.039 3.961 12 N -0.376 5.376 13 C 0.364 3.636 14 O -0.407 6.407 15 C -0.173 4.173 16 C -0.340 4.340 17 S 0.445 5.555 18 C -0.360 4.360 19 C -0.151 4.151 20 O -0.337 6.337 21 Si 0.712 3.288 22 H -0.156 1.156 23 H -0.147 1.147 24 H -0.155 1.155 25 C -0.079 4.079 26 C -0.116 4.116 27 C -0.117 4.117 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.235 0.765 42 H 0.188 0.812 43 H 0.145 0.855 44 H 0.226 0.774 45 H 0.177 0.823 46 H 0.149 0.851 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.970 -1.063 -6.650 6.804 hybrid contribution -0.676 1.283 0.731 1.624 sum 0.294 0.220 -5.919 5.930 Atomic orbital electron populations 1.26116 1.19962 1.04970 1.04986 0.77029 0.66059 0.64719 0.59372 1.26115 1.06690 1.18237 1.04988 1.26117 1.06693 1.08430 1.14778 1.36097 1.00377 1.01192 1.04583 1.20977 0.99609 0.98736 0.95162 1.16256 0.95321 0.95042 0.92038 1.21258 0.99681 0.94588 0.96139 1.21056 0.95807 0.99711 0.95030 1.19958 0.96387 0.96944 0.97251 1.20232 0.93207 0.89069 0.93597 1.45900 1.46883 1.34742 1.10037 1.17597 0.79813 0.80780 0.85399 1.90836 1.62181 1.70214 1.17459 1.20258 1.03695 1.01046 0.92344 1.25715 1.04049 1.03578 1.00677 1.83232 1.40774 1.27536 1.03926 1.24798 1.08310 1.06083 0.96800 1.24376 0.94774 0.96529 0.99441 1.86555 1.48111 1.63816 1.35205 0.86300 0.81905 0.81933 0.78707 1.15629 1.14696 1.15500 1.21045 0.93493 0.92284 1.01060 1.21056 0.99707 0.95026 0.95806 1.21258 0.95320 0.99867 0.95224 0.90880 0.90357 0.90910 0.90912 0.90356 0.90880 0.90916 0.90350 0.90917 0.85277 0.85103 0.90045 0.90034 0.76480 0.81164 0.85459 0.77442 0.82297 0.85098 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.02 8.65 101.05 0.87 1.90 16 2 Si 1.14 -3.25 14.26 -169.99 -2.42 -5.67 16 3 C -0.45 1.03 8.65 101.05 0.87 1.91 16 4 C -0.45 1.06 8.65 101.05 0.87 1.93 16 5 C -0.39 -0.55 12.14 29.55 0.36 -0.19 16 6 C -0.14 -0.45 13.24 -38.84 -0.51 -0.96 16 7 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 8 C -0.10 -0.09 9.75 -39.19 -0.38 -0.48 16 9 C -0.10 0.02 9.68 -39.64 -0.38 -0.36 16 10 C -0.10 0.03 5.25 -104.54 -0.55 -0.52 16 11 C 0.16 0.01 5.79 -5.19 -0.03 -0.02 16 12 N -0.72 -0.02 5.52 -62.63 -0.35 -0.37 16 13 C 0.58 1.65 7.79 -12.62 -0.10 1.55 16 14 O -0.53 -3.54 16.80 5.25 0.09 -3.45 16 15 C -0.16 -0.22 5.98 -104.63 -0.63 -0.84 16 16 C -0.20 0.19 10.38 29.93 0.31 0.50 16 17 S 0.18 -0.17 20.18 -107.50 -2.17 -2.34 16 18 C -0.24 -0.03 5.69 -36.18 -0.21 -0.24 16 19 C -0.04 0.03 2.95 36.01 0.11 0.14 16 20 O -0.53 -0.04 12.85 -35.23 -0.45 -0.49 16 21 Si 0.89 -1.08 26.19 -169.99 -4.45 -5.53 16 22 H -0.23 0.28 7.11 56.52 0.40 0.68 16 23 H -0.22 0.04 7.11 56.52 0.40 0.44 16 24 H -0.23 0.20 7.11 56.52 0.40 0.60 16 25 C -0.05 -0.08 9.91 -39.02 -0.39 -0.47 16 26 C -0.10 0.02 9.68 -39.64 -0.38 -0.36 16 27 C -0.10 -0.09 9.75 -39.19 -0.38 -0.47 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 29 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 36 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 37 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 38 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 39 H 0.08 0.04 8.08 -51.92 -0.42 -0.38 16 40 H 0.08 0.04 8.08 -51.93 -0.42 -0.38 16 41 H 0.40 -0.85 6.96 -40.82 -0.28 -1.13 16 42 H 0.17 -0.62 7.01 -52.48 -0.37 -0.98 16 43 H 0.13 -0.20 7.96 -51.93 -0.41 -0.62 16 44 H 0.38 -1.19 8.70 45.56 0.40 -0.80 16 45 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 46 H 0.13 -0.22 8.06 -52.48 -0.42 -0.64 16 47 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 LS Contribution 425.53 15.07 6.41 6.41 Total: 0.00 -8.44 425.53 -10.64 -19.08 By element: Atomic # 1 Polarization: -3.91 SS G_CDS: -6.14 Total: -10.05 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.16 Total: 2.42 kcal Atomic # 7 Polarization: -0.02 SS G_CDS: -0.35 Total: -0.37 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.36 Total: -3.95 kcal Atomic # 14 Polarization: -4.32 SS G_CDS: -6.88 Total: -11.20 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.17 Total: -2.34 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -8.44 -10.64 -19.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_6894386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.538 kcal (2) G-P(sol) polarization free energy of solvation -8.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds