Wall clock time and date at job start Sun Mar 7 2021 04:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86303 * 109.46936 * 2 1 4 4 C 1.86293 * 109.46977 * 239.99987 * 2 1 3 5 5 C 1.89999 * 109.46936 * 119.99839 * 2 1 3 6 6 C 3.07404 * 109.46876 * 119.99837 * 2 1 3 7 7 C 4.50603 * 109.46959 * 119.99849 * 2 1 3 8 8 C 1.39536 * 120.14002 * 6.04561 * 7 6 5 9 9 C 1.37977 * 119.85504 * 180.02562 * 8 7 6 10 10 C 1.38345 * 120.13834 * 0.02688 * 9 8 7 11 11 C 1.50703 * 119.85696 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47138 * 89.99958 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.28062 * 12 11 10 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 11 15 15 C 1.47191 * 119.99772 * 179.72411 * 13 12 11 16 16 C 1.36011 * 123.46169 * 0.02562 * 15 13 12 17 17 S 1.70447 * 110.81726 * 179.97438 * 16 15 13 18 18 C 1.75500 * 92.44366 * 0.02562 * 17 16 15 19 19 C 1.50702 * 124.70814 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47024 * 120.02732 * 19 18 17 21 21 Si 1.86296 * 109.47454 * 0.02623 * 19 18 17 22 22 H 1.48504 * 109.46962 * 59.99639 * 21 19 18 23 23 H 1.48495 * 109.47501 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47338 * 300.00138 * 21 19 18 25 25 C 1.32770 * 110.57649 * 359.73758 * 18 17 16 26 26 C 1.38343 * 120.28842 * 0.25122 * 10 9 8 27 27 C 1.37970 * 120.14380 * 359.44890 * 26 10 9 28 28 H 1.08996 * 109.47165 * 300.00206 * 1 2 3 29 29 H 1.09004 * 109.46732 * 60.00356 * 1 2 3 30 30 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46649 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47119 * 299.99406 * 3 2 1 33 33 H 1.08996 * 109.47362 * 59.99915 * 3 2 1 34 34 H 1.09003 * 109.47044 * 299.99701 * 4 2 1 35 35 H 1.08997 * 109.47382 * 60.00414 * 4 2 1 36 36 H 1.09001 * 109.47197 * 180.02562 * 4 2 1 37 37 H 1.07995 * 120.07531 * 0.02562 * 8 7 6 38 38 H 1.07991 * 119.93008 * 180.02562 * 9 8 7 39 39 H 1.09009 * 109.46601 * 329.99861 * 11 10 9 40 40 H 1.08998 * 109.47035 * 210.00368 * 11 10 9 41 41 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 42 42 H 1.08003 * 124.59167 * 0.02562 * 16 15 13 43 43 H 1.09004 * 109.47035 * 240.02293 * 19 18 17 44 44 H 0.96698 * 113.99979 * 300.00492 * 20 19 18 45 45 H 1.07998 * 123.45778 * 180.25063 * 25 18 17 46 46 H 1.08005 * 119.92853 * 179.70539 * 26 10 9 47 47 H 1.07999 * 120.08166 * 180.25529 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4963 -0.8956 1.5514 6 6 2.8876 -1.4491 2.5100 7 6 3.3649 -2.1241 3.6792 8 6 2.6786 -3.2319 4.1779 9 6 3.1435 -3.8776 5.3052 10 6 4.2871 -3.4284 5.9411 11 6 4.7888 -4.1380 7.1723 12 7 5.7185 -5.1997 6.7792 13 6 6.2921 -5.9756 7.7202 14 8 6.0418 -5.7911 8.8961 15 6 7.2216 -7.0463 7.3248 16 6 7.5515 -7.3137 6.0327 17 16 8.6495 -8.6145 5.9447 18 6 8.6714 -8.8121 7.6884 19 6 9.4798 -9.8494 8.4244 20 8 10.3874 -9.2006 9.3172 21 14 10.4394 -10.8732 7.1990 22 1 11.3510 -9.9929 6.4248 23 1 11.2364 -11.8950 7.9242 24 1 9.4962 -11.5475 6.2711 25 6 7.8808 -7.9175 8.2693 26 6 4.9688 -2.3271 5.4550 27 6 4.5180 -1.6763 4.3251 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5740 1.7564 -0.0005 32 1 2.1207 2.2703 -0.8901 33 1 2.1207 2.2703 0.8899 34 1 2.1206 -1.9059 -1.5210 35 1 2.1207 -0.3644 -2.4111 36 1 3.5740 -0.8786 -1.5209 37 1 1.7855 -3.5833 3.6827 38 1 2.6135 -4.7353 5.6920 39 1 3.9461 -4.5734 7.7095 40 1 5.3025 -3.4259 7.8181 41 1 5.9179 -5.3471 5.8414 42 1 7.1702 -6.7743 5.1783 43 1 8.8106 -10.4955 8.9926 44 1 11.0139 -8.6083 8.8794 45 1 7.7428 -7.8500 9.3383 46 1 5.8583 -1.9785 5.9588 47 1 5.0533 -0.8192 3.9441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_6894386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:26:27 Heat of formation + Delta-G solvation = -11.958733 kcal Electronic energy + Delta-G solvation = -26118.239411 eV Core-core repulsion = 22288.880852 eV Total energy + Delta-G solvation = -3829.358559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 373.108 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.23764 -40.34660 -38.83311 -37.14205 -36.42677 -34.44288 -32.25683 -32.12707 -31.18290 -29.46567 -28.29357 -28.29195 -27.73286 -26.97230 -25.23324 -23.79148 -22.95087 -22.07624 -20.62092 -19.55988 -19.10824 -18.21809 -17.86487 -16.95987 -16.86997 -16.40733 -16.32840 -16.02423 -15.92069 -15.76819 -15.27946 -14.57220 -14.54607 -14.49092 -14.35106 -14.16279 -14.12224 -14.03445 -13.87830 -13.84625 -13.68382 -13.46109 -13.17223 -13.16919 -12.99376 -12.71189 -12.63235 -12.40215 -12.35944 -12.24329 -12.18698 -12.00968 -11.83634 -11.62857 -11.14488 -10.80684 -10.65235 -10.60087 -10.34088 -10.09292 -9.99581 -9.55088 -9.50747 -0.38893 -0.32602 0.27199 0.31918 0.63675 0.79819 1.10314 1.36793 1.41227 1.50075 1.53980 1.69285 1.88916 2.06127 2.21847 2.37960 2.42284 2.46749 2.96907 3.39212 3.46462 3.66122 3.74186 3.80816 3.86965 3.89921 3.95675 4.24140 4.24763 4.28280 4.54490 4.57134 4.59404 4.68483 4.80186 4.83010 4.83062 4.85977 4.88841 4.89020 4.91670 4.94796 4.98696 5.12901 5.17617 5.22139 5.36483 5.41468 5.57894 5.67490 5.67637 5.77890 6.36967 6.55586 6.62444 7.05846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.201 2.799 3 C -0.462 4.462 4 C -0.461 4.461 5 C -0.391 4.391 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.108 4.108 9 C -0.095 4.095 10 C -0.100 4.100 11 C 0.165 3.835 12 N -0.708 5.708 13 C 0.578 3.422 14 O -0.579 6.579 15 C -0.180 4.180 16 C -0.186 4.186 17 S 0.213 5.787 18 C -0.244 4.244 19 C -0.043 4.043 20 O -0.549 6.549 21 Si 0.920 3.080 22 H -0.229 1.229 23 H -0.242 1.242 24 H -0.233 1.233 25 C -0.070 4.070 26 C -0.095 4.095 27 C -0.108 4.108 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.413 0.587 42 H 0.200 0.800 43 H 0.130 0.870 44 H 0.390 0.610 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 0.439 -8.214 8.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.383 2.617 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.421 4.421 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.126 4.126 9 C -0.113 4.113 10 C -0.100 4.100 11 C 0.042 3.958 12 N -0.360 5.360 13 C 0.365 3.635 14 O -0.460 6.460 15 C -0.198 4.198 16 C -0.325 4.325 17 S 0.480 5.520 18 C -0.361 4.361 19 C -0.155 4.155 20 O -0.356 6.356 21 Si 0.739 3.261 22 H -0.152 1.152 23 H -0.165 1.165 24 H -0.156 1.156 25 C -0.099 4.099 26 C -0.113 4.113 27 C -0.126 4.126 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.250 0.750 42 H 0.217 0.783 43 H 0.148 0.852 44 H 0.240 0.760 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.205 -1.070 -8.603 8.753 hybrid contribution -0.736 1.286 1.280 1.958 sum 0.469 0.216 -7.323 7.341 Atomic orbital electron populations 1.26231 1.20537 1.04923 1.05330 0.76287 0.64908 0.63387 0.57161 1.26227 1.06634 1.18795 1.05340 1.26214 1.06602 1.08506 1.15562 1.37495 0.99272 1.00390 1.04986 1.21585 1.01088 1.00151 0.96325 1.16522 0.96132 0.95761 0.92419 1.21388 0.99995 0.94573 0.96641 1.21214 0.95729 0.99895 0.94477 1.19906 0.96360 0.96865 0.96898 1.20180 0.93019 0.88935 0.93654 1.45784 1.46008 1.33939 1.10306 1.17846 0.79707 0.81004 0.84987 1.90805 1.64046 1.71712 1.19412 1.20140 1.04795 1.01554 0.93275 1.26030 1.02830 1.03061 1.00564 1.83140 1.39880 1.26734 1.02262 1.24926 1.07690 1.05641 0.97861 1.24549 0.94879 0.96374 0.99725 1.86520 1.48613 1.64289 1.36202 0.85914 0.81219 0.81022 0.77896 1.15159 1.16458 1.15589 1.20992 0.94801 0.93536 1.00552 1.21216 1.00044 0.94715 0.95326 1.21388 0.95255 1.00300 0.95645 0.91313 0.89249 0.91174 0.91154 0.89251 0.91295 0.91194 0.89238 0.91190 0.84782 0.83621 0.90415 0.90389 0.75027 0.78337 0.85198 0.76015 0.84170 0.83601 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.31 8.65 113.37 0.98 3.29 16 2 Si 1.20 -7.23 14.26 68.60 0.98 -6.25 16 3 C -0.46 2.34 8.65 113.37 0.98 3.32 16 4 C -0.46 2.46 8.65 113.37 0.98 3.44 16 5 C -0.39 -1.41 12.14 74.32 0.90 -0.51 16 6 C -0.19 -1.44 13.24 30.01 0.40 -1.04 16 7 C -0.01 -0.05 5.72 -21.41 -0.12 -0.17 16 8 C -0.11 -0.28 9.75 22.52 0.22 -0.06 16 9 C -0.09 0.03 9.68 22.23 0.22 0.25 16 10 C -0.10 0.06 5.25 -19.81 -0.10 -0.04 16 11 C 0.16 0.07 5.79 85.63 0.50 0.57 16 12 N -0.71 -0.05 5.52 -470.32 -2.60 -2.64 16 13 C 0.58 3.85 7.79 86.60 0.67 4.53 16 14 O -0.58 -8.98 16.80 -4.14 -0.07 -9.05 16 15 C -0.18 -0.59 5.98 -19.87 -0.12 -0.70 16 16 C -0.19 0.57 10.38 67.30 0.70 1.27 16 17 S 0.21 -0.67 20.18 -56.49 -1.14 -1.81 16 18 C -0.24 -0.11 5.69 24.51 0.14 0.03 16 19 C -0.04 0.05 2.95 71.24 0.21 0.26 16 20 O -0.55 -0.45 12.85 -148.98 -1.91 -2.37 16 21 Si 0.92 -2.67 26.19 68.60 1.80 -0.88 16 22 H -0.23 0.84 7.11 99.48 0.71 1.55 16 23 H -0.24 0.04 7.11 99.48 0.71 0.74 16 24 H -0.23 0.65 7.11 99.48 0.71 1.35 16 25 C -0.07 -0.33 9.91 22.67 0.22 -0.10 16 26 C -0.09 0.04 9.68 22.23 0.22 0.25 16 27 C -0.11 -0.28 9.75 22.52 0.22 -0.06 16 28 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 29 H 0.09 -0.63 7.96 -2.38 -0.02 -0.65 16 30 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 31 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 32 H 0.09 -0.63 7.96 -2.38 -0.02 -0.65 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 35 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 37 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 38 H 0.15 -0.54 8.06 -2.92 -0.02 -0.57 16 39 H 0.08 0.13 8.08 -2.38 -0.02 0.11 16 40 H 0.08 0.13 8.08 -2.39 -0.02 0.11 16 41 H 0.41 -2.13 6.96 -92.71 -0.65 -2.78 16 42 H 0.20 -1.91 7.01 -2.91 -0.02 -1.93 16 43 H 0.13 -0.31 7.96 -2.38 -0.02 -0.33 16 44 H 0.39 -2.31 8.70 -74.06 -0.64 -2.95 16 45 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 46 H 0.15 -0.55 8.06 -2.91 -0.02 -0.58 16 47 H 0.13 0.09 8.06 -2.91 -0.02 0.06 16 Total: 0.00 -21.13 425.53 4.73 -16.40 By element: Atomic # 1 Polarization: -8.37 SS G_CDS: 0.46 Total: -7.91 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 7.21 Total: 14.51 kcal Atomic # 7 Polarization: -0.05 SS G_CDS: -2.60 Total: -2.64 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.98 Total: -11.42 kcal Atomic # 14 Polarization: -9.90 SS G_CDS: 2.77 Total: -7.13 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -1.14 Total: -1.81 kcal Total: -21.13 4.73 -16.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_6894386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.440 kcal (2) G-P(sol) polarization free energy of solvation -21.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds