Wall clock time and date at job start Sun Mar 7 2021 04:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36764 * 125.80750 * 2 1 4 4 C 1.47263 * 126.94096 * 359.97438 * 3 2 1 5 5 O 1.21632 * 119.99917 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00237 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00213 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47197 * 179.97438 * 7 6 4 9 9 C 1.38345 * 119.85527 * 89.99949 * 8 7 6 10 10 C 1.37976 * 120.14242 * 180.02562 * 9 8 7 11 11 C 1.39533 * 119.85515 * 359.97438 * 10 9 8 12 12 C 1.43205 * 120.14229 * 179.97438 * 11 10 9 13 13 C 9.66750 * 150.79862 * 179.97438 * 3 1 2 14 14 Si 9.37189 * 173.63272 * 359.95098 * 6 1 2 15 15 C 1.86303 * 109.47168 * 115.46809 * 14 13 12 16 16 C 1.86299 * 109.47225 * 235.46318 * 14 13 12 17 17 C 1.86293 * 109.47348 * 355.46402 * 14 13 12 18 18 C 1.39538 * 119.71837 * 0.24774 * 11 10 9 19 19 C 1.37976 * 119.85390 * 359.51589 * 18 11 10 20 20 C 1.46685 * 106.11972 * 180.24632 * 3 2 1 21 21 C 1.34487 * 106.32851 * 359.62279 * 20 3 2 22 22 C 1.50705 * 125.56979 * 180.08815 * 21 20 3 23 23 O 1.42897 * 109.46888 * 120.33619 * 22 21 20 24 24 Si 1.86300 * 109.47178 * 0.33603 * 22 21 20 25 25 H 1.48503 * 109.47089 * 59.99897 * 24 22 21 26 26 H 1.48493 * 109.47246 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47320 * 300.00032 * 24 22 21 28 28 N 1.34663 * 125.79741 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46989 * 90.00018 * 1 2 3 30 30 H 1.08994 * 109.47594 * 210.00563 * 1 2 3 31 31 H 1.09001 * 109.46801 * 330.00472 * 1 2 3 32 32 H 0.97000 * 120.00143 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.46973 * 59.99452 * 7 6 4 34 34 H 1.09002 * 109.47199 * 299.99902 * 7 6 4 35 35 H 1.07999 * 119.93198 * 0.02562 * 9 8 7 36 36 H 1.08004 * 120.07207 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47332 * 59.99762 * 15 14 13 38 38 H 1.09002 * 109.47176 * 179.97438 * 15 14 13 39 39 H 1.09004 * 109.46801 * 299.99773 * 15 14 13 40 40 H 1.09001 * 109.47058 * 60.00018 * 16 14 13 41 41 H 1.09002 * 109.47329 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47529 * 300.00490 * 16 14 13 43 43 H 1.09001 * 109.47264 * 60.00441 * 17 14 13 44 44 H 1.09002 * 109.47236 * 180.02562 * 17 14 13 45 45 H 1.08998 * 109.47688 * 299.99834 * 17 14 13 46 46 H 1.07994 * 120.07419 * 179.72273 * 18 11 10 47 47 H 1.07997 * 119.92849 * 180.22787 * 19 18 11 48 48 H 1.07996 * 126.83637 * 179.74257 * 20 3 2 49 49 H 1.08999 * 109.46877 * 240.33451 * 22 21 20 50 50 H 0.96704 * 114.00256 * 299.99779 * 23 22 21 51 51 H 0.96994 * 124.84944 * 359.96481 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1091 0.0000 4 6 1.8704 2.5155 -0.0005 5 8 0.6841 2.7839 -0.0006 6 7 2.7852 3.5052 -0.0010 7 6 2.3507 4.9043 -0.0009 8 6 3.5586 5.8054 -0.0009 9 6 4.1106 6.2173 -1.2007 10 6 5.2169 7.0419 -1.2075 11 6 5.7784 7.4608 -0.0008 12 6 6.9269 8.3162 -0.0007 13 6 7.8692 9.0163 -0.0021 14 14 9.3932 10.1510 -0.0019 15 6 9.4404 11.1278 -1.5877 16 6 9.2966 11.3205 1.4450 17 6 10.9369 9.1175 0.1370 18 6 5.2196 7.0381 1.2059 19 6 4.1104 6.2175 1.1990 20 6 3.6882 0.6150 -0.0061 21 6 3.6095 -0.7276 -0.0007 22 6 4.7819 -1.6745 -0.0020 23 8 4.7297 -2.4988 1.1642 24 14 6.3686 -0.6983 -0.0020 25 1 6.4240 0.1563 1.2112 26 1 7.5238 -1.6314 -0.0026 27 1 6.4229 0.1582 -1.2138 28 7 2.2947 -1.0922 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 3.7313 3.2912 -0.0006 33 1 1.7525 5.0990 0.8892 34 1 1.7519 5.0989 -0.8907 35 1 3.6748 5.8927 -2.1340 36 1 5.6472 7.3624 -2.1448 37 1 8.5372 11.7325 -1.6690 38 1 10.3145 11.7790 -1.5874 39 1 9.4970 10.4435 -2.4343 40 1 9.2690 10.7491 2.3728 41 1 10.1707 11.9717 1.4449 42 1 8.3934 11.9252 1.3638 43 1 10.9936 8.4332 -0.7096 44 1 11.8112 9.7684 0.1376 45 1 10.9094 8.5460 1.0648 46 1 5.6523 7.3552 2.1432 47 1 3.6747 5.8925 2.1322 48 1 4.5890 1.2107 -0.0116 49 1 4.7412 -2.3018 -0.8924 50 1 4.7617 -2.0062 1.9957 51 1 1.9732 -2.0074 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_9865296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:28:25 Heat of formation + Delta-G solvation = -13.798572 kcal Electronic energy + Delta-G solvation = -28839.545104 eV Core-core repulsion = 24828.217128 eV Total energy + Delta-G solvation = -4011.327976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.46130 -40.68805 -39.71437 -37.84106 -36.14889 -34.25867 -32.91269 -32.34022 -32.04529 -31.18156 -29.63627 -29.08006 -28.47291 -28.47000 -27.38700 -25.40055 -23.71072 -23.44265 -22.49144 -21.49778 -20.60533 -19.46564 -19.20096 -17.42941 -17.26659 -16.79586 -16.73232 -16.55244 -16.11502 -15.89870 -15.73513 -15.67084 -15.01593 -14.89772 -14.63140 -14.48814 -14.43052 -14.30786 -14.28037 -14.08927 -14.05153 -13.91587 -13.77952 -13.47699 -13.39201 -13.36408 -13.36053 -13.15117 -12.98615 -12.58580 -12.34374 -12.30885 -12.15514 -12.10636 -12.02768 -11.94720 -11.58042 -10.97891 -10.77210 -10.72716 -10.72376 -10.06695 -10.00176 -9.82773 -9.42523 -9.15399 -0.20198 0.35705 0.79946 0.95463 1.18266 1.37750 1.39474 1.45868 1.53644 1.60234 1.79165 2.08986 2.28644 2.33426 2.34925 2.65818 2.67290 3.10812 3.30496 3.52111 3.59566 3.82568 3.86015 3.89020 3.95998 4.09693 4.17841 4.34981 4.35289 4.35948 4.47029 4.65659 4.65736 4.67870 4.68058 4.69750 4.69978 4.70387 4.70396 4.72077 4.74188 4.91087 4.96132 5.00604 5.20108 5.25868 5.39464 5.45628 5.49097 5.49596 5.51207 5.53077 5.66459 5.86006 5.87436 6.35671 6.38872 6.69116 6.71813 7.46300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.121 3.879 3 C -0.235 4.235 4 C 0.594 3.406 5 O -0.547 6.547 6 N -0.725 5.725 7 C 0.163 3.837 8 C -0.102 4.102 9 C -0.098 4.098 10 C -0.099 4.099 11 C 0.011 3.989 12 C -0.143 4.143 13 C -0.391 4.391 14 Si 1.144 2.856 15 C -0.453 4.453 16 C -0.453 4.453 17 C -0.452 4.452 18 C -0.099 4.099 19 C -0.098 4.098 20 C -0.165 4.165 21 C -0.013 4.013 22 C -0.062 4.062 23 O -0.543 6.543 24 Si 0.971 3.029 25 H -0.248 1.248 26 H -0.251 1.251 27 H -0.247 1.247 28 N -0.533 5.533 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.401 0.599 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.144 0.856 49 H 0.118 0.882 50 H 0.380 0.620 51 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 -0.131 0.111 3.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.002 3.998 3 C -0.245 4.245 4 C 0.383 3.617 5 O -0.426 6.426 6 N -0.377 5.377 7 C 0.040 3.960 8 C -0.103 4.103 9 C -0.116 4.116 10 C -0.117 4.117 11 C 0.011 3.989 12 C -0.143 4.143 13 C -0.425 4.425 14 Si 1.330 2.670 15 C -0.560 4.560 16 C -0.560 4.560 17 C -0.560 4.560 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.190 4.190 21 C -0.123 4.123 22 C -0.173 4.173 23 O -0.348 6.348 24 Si 0.791 3.209 25 H -0.171 1.171 26 H -0.175 1.175 27 H -0.170 1.170 28 N -0.129 5.129 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.235 0.765 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.162 0.838 49 H 0.136 0.864 50 H 0.228 0.772 51 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.616 -0.149 -0.335 3.634 hybrid contribution -0.344 -0.543 0.323 0.719 sum 3.271 -0.692 -0.012 3.344 Atomic orbital electron populations 1.20640 0.86556 1.04545 1.03840 1.20444 0.93856 0.85361 1.00142 1.19941 0.92624 0.91983 1.19918 1.17303 0.85171 0.83949 0.75262 1.90764 1.16513 1.84326 1.50993 1.45814 1.10007 1.05278 1.76578 1.20179 0.93331 0.78965 1.03549 1.19992 0.97464 0.99316 0.93495 1.21055 0.95567 0.97118 0.97904 1.21249 0.95864 0.97287 0.97268 1.16248 0.92459 0.96339 0.93841 1.20986 0.95308 0.97670 1.00310 1.36063 1.04437 1.02189 0.99804 0.76994 0.59654 0.63069 0.67320 1.26119 1.04958 1.08990 1.15973 1.26119 1.05017 1.10780 1.14128 1.26120 1.15095 1.09778 1.05037 1.21247 0.95845 0.97314 0.97265 1.21052 0.95539 0.97167 0.97894 1.21757 0.96216 0.92721 1.08289 1.20732 0.85202 0.94686 1.11677 1.24801 1.02632 0.97935 0.91892 1.86506 1.96930 1.35767 1.15564 0.85371 0.74813 0.78465 0.82284 1.17066 1.17460 1.17017 1.41547 1.05348 1.08831 1.57173 0.90071 0.91500 0.87813 0.76483 0.90309 0.90296 0.85123 0.85347 0.90900 0.90392 0.90919 0.90920 0.90392 0.90900 0.90919 0.90394 0.90925 0.85351 0.85131 0.83843 0.86384 0.77231 0.74237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.03 9.88 36.01 0.36 0.32 16 2 C 0.12 0.17 7.17 -81.88 -0.59 -0.42 16 3 C -0.24 -0.56 6.29 -103.35 -0.65 -1.21 16 4 C 0.59 2.09 7.81 -12.59 -0.10 1.99 16 5 O -0.55 -3.46 14.81 5.25 0.08 -3.38 16 6 N -0.73 -0.80 5.54 -62.61 -0.35 -1.14 16 7 C 0.16 0.12 5.79 -5.19 -0.03 0.09 16 8 C -0.10 -0.04 5.25 -104.55 -0.55 -0.58 16 9 C -0.10 -0.04 9.68 -39.64 -0.38 -0.42 16 10 C -0.10 -0.14 9.75 -39.19 -0.38 -0.52 16 11 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 12 C -0.14 -0.49 13.24 -38.84 -0.51 -1.00 16 13 C -0.39 -0.66 12.14 29.55 0.36 -0.30 16 14 Si 1.14 -3.03 14.26 -169.99 -2.42 -5.46 16 15 C -0.45 0.94 8.65 101.05 0.87 1.82 16 16 C -0.45 0.94 8.65 101.05 0.87 1.81 16 17 C -0.45 0.96 8.65 101.05 0.87 1.83 16 18 C -0.10 -0.14 9.75 -39.19 -0.38 -0.52 16 19 C -0.10 -0.04 9.68 -39.64 -0.38 -0.42 16 20 C -0.17 -0.09 9.03 -37.50 -0.34 -0.43 16 21 C -0.01 0.00 6.48 -81.86 -0.53 -0.53 16 22 C -0.06 0.10 3.08 36.01 0.11 0.21 16 23 O -0.54 0.54 12.88 -35.23 -0.45 0.09 16 24 Si 0.97 -1.63 25.84 -169.99 -4.39 -6.02 16 25 H -0.25 0.34 7.11 56.52 0.40 0.74 16 26 H -0.25 0.07 7.11 56.52 0.40 0.47 16 27 H -0.25 0.25 7.11 56.52 0.40 0.65 16 28 N -0.53 0.20 5.90 -5.42 -0.03 0.17 16 29 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 31 H 0.10 0.23 6.47 -51.93 -0.34 -0.11 16 32 H 0.40 -0.19 7.59 -40.82 -0.31 -0.50 16 33 H 0.08 0.08 8.08 -51.93 -0.42 -0.34 16 34 H 0.08 0.09 8.08 -51.93 -0.42 -0.33 16 35 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 36 H 0.13 0.04 8.06 -52.48 -0.42 -0.38 16 37 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 38 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 41 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 42 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 44 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 45 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 46 H 0.13 0.04 8.06 -52.49 -0.42 -0.39 16 47 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 48 H 0.14 -0.17 5.86 -52.49 -0.31 -0.48 16 49 H 0.12 -0.29 7.96 -51.93 -0.41 -0.71 16 50 H 0.38 -1.44 8.70 45.56 0.40 -1.05 16 51 H 0.42 -1.04 8.96 -40.82 -0.37 -1.41 16 LS Contribution 439.16 15.07 6.62 6.62 Total: 0.00 -8.85 439.16 -10.18 -19.02 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: -7.23 Total: -11.03 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.99 Total: 1.13 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -0.38 Total: -0.97 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -0.38 Total: -3.29 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: -6.82 Total: -11.48 kcal Total LS contribution 6.62 Total: 6.62 kcal Total: -8.85 -10.18 -19.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_9865296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.225 kcal (2) G-P(sol) polarization free energy of solvation -8.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds