Wall clock time and date at job start Sun Mar 7 2021 04:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36764 * 125.80750 * 2 1 4 4 C 1.47263 * 126.94096 * 359.97438 * 3 2 1 5 5 O 1.21632 * 119.99917 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00237 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00213 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47197 * 179.97438 * 7 6 4 9 9 C 1.38345 * 119.85527 * 89.99949 * 8 7 6 10 10 C 1.37976 * 120.14242 * 180.02562 * 9 8 7 11 11 C 1.39533 * 119.85515 * 359.97438 * 10 9 8 12 12 C 1.43205 * 120.14229 * 179.97438 * 11 10 9 13 13 C 9.66750 * 150.79862 * 179.97438 * 3 1 2 14 14 Si 9.37189 * 173.63272 * 359.95098 * 6 1 2 15 15 C 1.86303 * 109.47168 * 115.46809 * 14 13 12 16 16 C 1.86299 * 109.47225 * 235.46318 * 14 13 12 17 17 C 1.86293 * 109.47348 * 355.46402 * 14 13 12 18 18 C 1.39538 * 119.71837 * 0.24774 * 11 10 9 19 19 C 1.37976 * 119.85390 * 359.51589 * 18 11 10 20 20 C 1.46685 * 106.11972 * 180.24632 * 3 2 1 21 21 C 1.34487 * 106.32851 * 359.62279 * 20 3 2 22 22 C 1.50705 * 125.56979 * 180.08815 * 21 20 3 23 23 O 1.42897 * 109.46888 * 120.33619 * 22 21 20 24 24 Si 1.86300 * 109.47178 * 0.33603 * 22 21 20 25 25 H 1.48503 * 109.47089 * 59.99897 * 24 22 21 26 26 H 1.48493 * 109.47246 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47320 * 300.00032 * 24 22 21 28 28 N 1.34663 * 125.79741 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46989 * 90.00018 * 1 2 3 30 30 H 1.08994 * 109.47594 * 210.00563 * 1 2 3 31 31 H 1.09001 * 109.46801 * 330.00472 * 1 2 3 32 32 H 0.97000 * 120.00143 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.46973 * 59.99452 * 7 6 4 34 34 H 1.09002 * 109.47199 * 299.99902 * 7 6 4 35 35 H 1.07999 * 119.93198 * 0.02562 * 9 8 7 36 36 H 1.08004 * 120.07207 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47332 * 59.99762 * 15 14 13 38 38 H 1.09002 * 109.47176 * 179.97438 * 15 14 13 39 39 H 1.09004 * 109.46801 * 299.99773 * 15 14 13 40 40 H 1.09001 * 109.47058 * 60.00018 * 16 14 13 41 41 H 1.09002 * 109.47329 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47529 * 300.00490 * 16 14 13 43 43 H 1.09001 * 109.47264 * 60.00441 * 17 14 13 44 44 H 1.09002 * 109.47236 * 180.02562 * 17 14 13 45 45 H 1.08998 * 109.47688 * 299.99834 * 17 14 13 46 46 H 1.07994 * 120.07419 * 179.72273 * 18 11 10 47 47 H 1.07997 * 119.92849 * 180.22787 * 19 18 11 48 48 H 1.07996 * 126.83637 * 179.74257 * 20 3 2 49 49 H 1.08999 * 109.46877 * 240.33451 * 22 21 20 50 50 H 0.96704 * 114.00256 * 299.99779 * 23 22 21 51 51 H 0.96994 * 124.84944 * 359.96481 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1091 0.0000 4 6 1.8704 2.5155 -0.0005 5 8 0.6841 2.7839 -0.0006 6 7 2.7852 3.5052 -0.0010 7 6 2.3507 4.9043 -0.0009 8 6 3.5586 5.8054 -0.0009 9 6 4.1106 6.2173 -1.2007 10 6 5.2169 7.0419 -1.2075 11 6 5.7784 7.4608 -0.0008 12 6 6.9269 8.3162 -0.0007 13 6 7.8692 9.0163 -0.0021 14 14 9.3932 10.1510 -0.0019 15 6 9.4404 11.1278 -1.5877 16 6 9.2966 11.3205 1.4450 17 6 10.9369 9.1175 0.1370 18 6 5.2196 7.0381 1.2059 19 6 4.1104 6.2175 1.1990 20 6 3.6882 0.6150 -0.0061 21 6 3.6095 -0.7276 -0.0007 22 6 4.7819 -1.6745 -0.0020 23 8 4.7297 -2.4988 1.1642 24 14 6.3686 -0.6983 -0.0020 25 1 6.4240 0.1563 1.2112 26 1 7.5238 -1.6314 -0.0026 27 1 6.4229 0.1582 -1.2138 28 7 2.2947 -1.0922 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 3.7313 3.2912 -0.0006 33 1 1.7525 5.0990 0.8892 34 1 1.7519 5.0989 -0.8907 35 1 3.6748 5.8927 -2.1340 36 1 5.6472 7.3624 -2.1448 37 1 8.5372 11.7325 -1.6690 38 1 10.3145 11.7790 -1.5874 39 1 9.4970 10.4435 -2.4343 40 1 9.2690 10.7491 2.3728 41 1 10.1707 11.9717 1.4449 42 1 8.3934 11.9252 1.3638 43 1 10.9936 8.4332 -0.7096 44 1 11.8112 9.7684 0.1376 45 1 10.9094 8.5460 1.0648 46 1 5.6523 7.3552 2.1432 47 1 3.6747 5.8925 2.1322 48 1 4.5890 1.2107 -0.0116 49 1 4.7412 -2.3018 -0.8924 50 1 4.7617 -2.0062 1.9957 51 1 1.9732 -2.0074 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_9865296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:28:23 Heat of formation + Delta-G solvation = -8.298666 kcal Electronic energy + Delta-G solvation = -28839.306610 eV Core-core repulsion = 24828.217128 eV Total energy + Delta-G solvation = -4011.089483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.163 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.48884 -40.78741 -39.89134 -37.74085 -36.31294 -34.39003 -32.92299 -32.41802 -32.10312 -31.26587 -29.46029 -29.05769 -28.28582 -28.28538 -27.47286 -25.40772 -23.76638 -23.52134 -22.59148 -21.49412 -20.74269 -19.53440 -19.16071 -17.49862 -17.31175 -16.86711 -16.80498 -16.52416 -16.14107 -15.95074 -15.82382 -15.64232 -15.05348 -14.85152 -14.73881 -14.52627 -14.44127 -14.31232 -14.13837 -14.09141 -13.88823 -13.86463 -13.80992 -13.63080 -13.38646 -13.16553 -13.16237 -12.98722 -12.96122 -12.61373 -12.37664 -12.27188 -12.19932 -12.08117 -11.99396 -11.87291 -11.61232 -11.02746 -10.78683 -10.65816 -10.64261 -10.24031 -10.07007 -9.87298 -9.52064 -9.19626 -0.29271 0.29482 0.67131 1.06279 1.20248 1.38384 1.51982 1.56073 1.57503 1.70728 1.88999 2.09881 2.32034 2.39362 2.47646 2.47686 2.59733 3.00469 3.48456 3.51787 3.56112 3.77248 3.83068 3.86801 3.91303 4.04877 4.18749 4.28326 4.30690 4.43235 4.52448 4.60452 4.63193 4.68536 4.69907 4.83194 4.83641 4.83683 4.86588 4.89533 4.89566 4.92388 4.94515 4.97063 5.15347 5.19051 5.38427 5.40481 5.44876 5.58459 5.62302 5.68139 5.68203 5.80451 5.84011 6.44644 6.57064 6.58140 6.60907 7.27292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.115 3.885 3 C -0.260 4.260 4 C 0.589 3.411 5 O -0.583 6.583 6 N -0.715 5.715 7 C 0.167 3.833 8 C -0.099 4.099 9 C -0.096 4.096 10 C -0.108 4.108 11 C -0.010 4.010 12 C -0.191 4.191 13 C -0.391 4.391 14 Si 1.204 2.796 15 C -0.463 4.463 16 C -0.463 4.463 17 C -0.462 4.462 18 C -0.108 4.108 19 C -0.096 4.096 20 C -0.173 4.173 21 C -0.010 4.010 22 C -0.057 4.057 23 O -0.553 6.553 24 Si 1.001 2.999 25 H -0.251 1.251 26 H -0.271 1.271 27 H -0.255 1.255 28 N -0.525 5.525 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.409 0.591 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.134 0.866 47 H 0.146 0.854 48 H 0.157 0.843 49 H 0.129 0.871 50 H 0.391 0.609 51 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -0.528 0.145 4.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.006 4.006 3 C -0.270 4.270 4 C 0.379 3.621 5 O -0.465 6.465 6 N -0.366 5.366 7 C 0.044 3.956 8 C -0.100 4.100 9 C -0.115 4.115 10 C -0.126 4.126 11 C -0.010 4.010 12 C -0.191 4.191 13 C -0.422 4.422 14 Si 1.385 2.615 15 C -0.570 4.570 16 C -0.570 4.570 17 C -0.569 4.569 18 C -0.126 4.126 19 C -0.114 4.114 20 C -0.197 4.197 21 C -0.120 4.120 22 C -0.167 4.167 23 O -0.360 6.360 24 Si 0.823 3.177 25 H -0.174 1.174 26 H -0.195 1.195 27 H -0.179 1.179 28 N -0.121 5.121 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.245 0.755 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.152 0.848 47 H 0.163 0.837 48 H 0.174 0.826 49 H 0.147 0.853 50 H 0.241 0.759 51 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.564 -0.565 -0.290 4.608 hybrid contribution -0.590 -0.415 0.322 0.790 sum 3.974 -0.981 0.032 4.093 Atomic orbital electron populations 1.20586 0.86142 1.04515 1.03945 1.20597 0.94343 0.85708 0.99935 1.20046 0.93836 0.91674 1.21394 1.17561 0.84898 0.84793 0.74802 1.90739 1.17911 1.84910 1.52918 1.45750 1.10192 1.05112 1.75593 1.20126 0.93371 0.78791 1.03287 1.19958 0.97210 0.99183 0.93604 1.21213 0.95108 0.96565 0.98564 1.21383 0.96288 0.97664 0.97269 1.16514 0.92863 0.96898 0.94699 1.21576 0.96498 0.99038 1.01976 1.37497 1.04725 1.01692 0.98261 0.76241 0.57410 0.61418 0.66417 1.26230 1.05304 1.09267 1.16201 1.26231 1.05357 1.11138 1.14283 1.26222 1.15909 1.10039 1.04756 1.21384 0.96264 0.97673 0.97264 1.21213 0.95065 0.96591 0.98553 1.21940 0.95959 0.93259 1.08528 1.20971 0.85577 0.94726 1.10696 1.24828 1.01748 0.97841 0.92298 1.86484 1.96847 1.36411 1.16298 0.84922 0.73755 0.77429 0.81576 1.17410 1.19540 1.17905 1.41551 1.05162 1.09036 1.56380 0.89878 0.89388 0.89904 0.75515 0.90577 0.90606 0.83708 0.84797 0.91303 0.89259 0.91189 0.91193 0.89256 0.91315 0.91228 0.89253 0.91225 0.84770 0.83672 0.82564 0.85281 0.75897 0.72995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.11 9.88 71.24 0.70 0.59 16 2 C 0.11 0.34 7.17 41.78 0.30 0.64 16 3 C -0.26 -1.37 6.29 -19.04 -0.12 -1.49 16 4 C 0.59 4.79 7.81 86.62 0.68 5.47 16 5 O -0.58 -8.36 14.81 -4.13 -0.06 -8.42 16 6 N -0.72 -2.04 5.54 -470.26 -2.61 -4.65 16 7 C 0.17 0.36 5.79 85.63 0.50 0.85 16 8 C -0.10 -0.12 5.25 -19.81 -0.10 -0.22 16 9 C -0.10 -0.13 9.68 22.23 0.22 0.08 16 10 C -0.11 -0.44 9.75 22.52 0.22 -0.22 16 11 C -0.01 -0.07 5.72 -21.41 -0.12 -0.19 16 12 C -0.19 -1.60 13.24 30.02 0.40 -1.21 16 13 C -0.39 -1.67 12.14 74.32 0.90 -0.77 16 14 Si 1.20 -6.70 14.26 68.60 0.98 -5.72 16 15 C -0.46 2.13 8.65 113.37 0.98 3.11 16 16 C -0.46 2.12 8.65 113.37 0.98 3.10 16 17 C -0.46 2.21 8.65 113.37 0.98 3.19 16 18 C -0.11 -0.43 9.75 22.52 0.22 -0.21 16 19 C -0.10 -0.12 9.68 22.23 0.22 0.09 16 20 C -0.17 -0.16 9.03 23.62 0.21 0.05 16 21 C -0.01 0.01 6.48 40.98 0.27 0.28 16 22 C -0.06 0.24 3.08 71.24 0.22 0.46 16 23 O -0.55 1.70 12.88 -148.98 -1.92 -0.22 16 24 Si 1.00 -3.80 25.84 68.60 1.77 -2.03 16 25 H -0.25 0.84 7.11 99.48 0.71 1.55 16 26 H -0.27 0.13 7.11 99.48 0.71 0.84 16 27 H -0.26 0.62 7.11 99.48 0.71 1.33 16 28 N -0.52 0.72 5.90 -171.07 -1.01 -0.29 16 29 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.08 0.50 6.47 -2.39 -0.02 0.48 16 32 H 0.41 -0.27 7.59 -92.71 -0.70 -0.97 16 33 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 34 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 35 H 0.15 -0.29 8.06 -2.91 -0.02 -0.31 16 36 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 37 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 38 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 39 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 40 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 42 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 43 H 0.07 -0.27 7.96 -2.39 -0.02 -0.28 16 44 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 45 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 46 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 47 H 0.15 -0.31 8.06 -2.91 -0.02 -0.34 16 48 H 0.16 -0.43 5.86 -2.91 -0.02 -0.44 16 49 H 0.13 -0.81 7.96 -2.39 -0.02 -0.83 16 50 H 0.39 -3.36 8.70 -74.05 -0.64 -4.00 16 51 H 0.43 -2.56 8.96 -92.71 -0.83 -3.39 16 Total: 0.00 -21.08 439.16 4.34 -16.74 By element: Atomic # 1 Polarization: -8.57 SS G_CDS: -0.45 Total: -9.03 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 7.64 Total: 13.62 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -3.62 Total: -4.94 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -1.98 Total: -8.64 kcal Atomic # 14 Polarization: -10.50 SS G_CDS: 2.75 Total: -7.75 kcal Total: -21.08 4.34 -16.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_9865296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.442 kcal (2) G-P(sol) polarization free energy of solvation -21.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds