Wall clock time and date at job start Sun Mar 7 2021 00:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47017 * 2 1 4 4 C 1.35902 * 116.99578 * 84.70446 * 3 2 1 5 5 C 1.38734 * 120.05617 * 174.63604 * 4 3 2 6 6 C 1.38144 * 119.94761 * 179.72767 * 5 4 3 7 7 C 1.38263 * 120.05121 * 0.25056 * 6 5 4 8 8 C 1.50702 * 119.94383 * 179.97438 * 7 6 5 9 9 O 1.42899 * 109.47167 * 300.00925 * 8 7 6 10 10 Si 1.86290 * 109.47540 * 180.02562 * 8 7 6 11 11 C 1.38261 * 120.11754 * 0.02562 * 7 6 5 12 12 C 1.38151 * 120.05164 * 359.97438 * 11 7 6 13 13 C 1.50703 * 109.46785 * 240.00705 * 2 1 3 14 14 O 1.21284 * 120.00253 * 120.00103 * 13 2 1 15 15 N 1.34773 * 119.99946 * 299.99227 * 13 2 1 16 16 C 1.46500 * 119.99956 * 180.02562 * 15 13 2 17 17 H 1.08993 * 112.84883 * 23.80932 * 16 15 13 18 18 C 1.53785 * 113.61161 * 155.00601 * 16 15 13 19 19 C 1.53782 * 87.08280 * 89.11505 * 18 16 15 20 20 H 1.08994 * 113.61231 * 270.79732 * 19 18 16 21 21 C 1.50699 * 113.61483 * 139.98030 * 19 18 16 22 22 C 1.38449 * 119.98984 * 119.72092 * 21 19 18 23 23 F 1.35099 * 120.00947 * 0.02600 * 22 21 19 24 24 C 1.38437 * 119.97658 * 179.76569 * 22 21 19 25 25 C 1.38399 * 119.94677 * 0.49373 * 24 22 21 26 26 F 1.35101 * 120.00915 * 179.78729 * 25 24 22 27 27 C 1.38492 * 119.97492 * 359.76260 * 25 24 22 28 28 C 1.38180 * 120.02680 * 359.97438 * 27 25 24 29 29 C 1.53783 * 87.08199 * 25.43049 * 19 18 16 30 30 H 1.09004 * 109.47516 * 59.99500 * 1 2 3 31 31 H 1.08995 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46713 * 299.99634 * 1 2 3 33 33 H 1.08991 * 109.47357 * 120.00284 * 2 1 3 34 34 H 1.07999 * 120.02566 * 0.02562 * 5 4 3 35 35 H 1.07997 * 119.97270 * 180.23339 * 6 5 4 36 36 H 1.09007 * 109.46983 * 59.99664 * 8 7 6 37 37 H 0.96702 * 113.99421 * 299.99221 * 9 8 7 38 38 H 1.48496 * 109.99975 * 58.68007 * 10 8 7 39 39 H 1.48497 * 110.00445 * 180.02562 * 10 8 7 40 40 H 1.07999 * 119.97520 * 179.97438 * 11 7 6 41 41 H 1.08007 * 120.02409 * 180.02562 * 12 11 7 42 42 H 0.97003 * 119.99754 * 0.02562 * 15 13 2 43 43 H 1.09002 * 113.61223 * 203.66630 * 18 16 15 44 44 H 1.09003 * 113.61430 * 334.47987 * 18 16 15 45 45 H 1.08003 * 120.02722 * 180.25272 * 24 22 21 46 46 H 1.08002 * 119.98176 * 179.97438 * 27 25 24 47 47 H 1.08000 * 119.97674 * 179.97438 * 28 27 25 48 48 H 1.08995 * 113.61417 * 220.02071 * 29 19 18 49 49 H 1.08996 * 113.61398 * 89.11520 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1065 1.9662 1.2058 5 6 2.6655 3.2330 1.2923 6 6 2.7611 3.8623 2.5183 7 6 2.3051 3.2286 3.6593 8 6 2.4112 3.9171 4.9957 9 8 3.7834 4.1965 5.2800 10 14 1.7159 2.8092 6.3221 11 6 1.7529 1.9637 3.5767 12 6 1.6550 1.3301 2.3530 13 6 2.0322 -0.7103 -1.2306 14 8 2.7295 -0.1208 -2.0289 15 7 1.7067 -2.0006 -1.4439 16 6 2.1954 -2.6912 -2.6399 17 1 3.1009 -2.2420 -3.0477 18 6 2.2848 -4.2178 -2.4764 19 6 0.8301 -4.2771 -2.9715 20 1 0.0933 -4.1982 -2.1722 21 6 0.5573 -5.4263 -3.9075 22 6 -0.3864 -6.3824 -3.5729 23 9 -1.0632 -6.2849 -2.4077 24 6 -0.6402 -7.4353 -4.4351 25 6 0.0574 -7.5364 -5.6262 26 9 -0.1862 -8.5658 -6.4666 27 6 1.0048 -6.5818 -5.9564 28 6 1.2534 -5.5283 -5.0975 29 6 1.1040 -2.9468 -3.6928 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.0211 3.7288 0.4011 35 1 3.1927 4.8501 2.5856 36 1 1.8484 4.8503 4.9693 37 1 4.3450 3.4102 5.3188 38 1 2.4545 1.5212 6.3469 39 1 1.8140 3.4770 7.6448 40 1 1.3978 1.4706 4.4695 41 1 1.2231 0.3422 2.2889 42 1 1.1488 -2.4720 -0.8055 43 1 2.9964 -4.6886 -3.1546 44 1 2.4090 -4.5396 -1.4424 45 1 -1.3792 -8.1793 -4.1768 46 1 1.5495 -6.6608 -6.8856 47 1 1.9927 -4.7845 -5.3556 48 1 0.2736 -2.2428 -3.6407 49 1 1.4929 -3.0702 -4.7036 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:04:38 Heat of formation + Delta-G solvation = -102.371569 kcal Electronic energy + Delta-G solvation = -34648.975092 eV Core-core repulsion = 29566.311173 eV Total energy + Delta-G solvation = -5082.663919 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.148 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -50.06523 -50.04190 -41.93849 -41.27650 -40.28798 -39.22332 -38.54740 -37.26435 -34.93729 -33.18823 -31.98754 -31.81958 -31.62313 -31.12115 -26.80798 -26.72417 -26.37507 -25.32313 -24.34471 -24.02214 -22.94342 -22.46068 -21.52634 -20.32661 -19.53854 -19.34155 -18.64898 -18.28863 -18.12392 -17.42443 -17.04824 -16.93379 -16.83536 -16.79528 -16.60549 -16.36761 -16.32148 -16.16357 -15.68831 -15.64206 -15.52475 -15.35333 -15.19360 -14.76272 -14.61873 -14.48492 -14.07256 -14.03242 -13.79173 -13.63749 -13.56127 -13.49813 -13.39233 -13.26373 -12.85863 -12.84080 -12.55860 -12.26984 -12.14246 -12.06561 -12.00461 -11.73658 -11.59162 -11.32319 -10.94482 -10.58666 -10.19821 -10.08569 -10.03739 -9.59396 -9.22639 -4.90623 -0.12457 -0.03034 0.26775 0.30239 1.34118 1.37398 1.49695 1.61788 1.98959 2.28279 2.47839 2.64640 2.82622 3.29939 3.41718 3.44587 3.45091 3.50049 3.64025 3.66935 3.68019 3.72593 3.83049 3.85890 3.88365 3.93962 3.95064 4.08561 4.17590 4.29131 4.37041 4.54353 4.59107 4.61515 4.65915 4.70577 4.73236 4.74518 4.82845 4.84913 4.90320 4.91594 4.96933 5.01166 5.08107 5.10598 5.12051 5.19350 5.25408 5.25789 5.49231 5.54377 5.70248 5.72903 6.25726 6.43696 6.50609 7.08243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.063 3.937 3 O -0.313 6.313 4 C 0.122 3.878 5 C -0.166 4.166 6 C -0.059 4.059 7 C -0.158 4.158 8 C -0.082 4.082 9 O -0.551 6.551 10 Si 0.771 3.229 11 C -0.074 4.074 12 C -0.202 4.202 13 C 0.519 3.481 14 O -0.568 6.568 15 N -0.692 5.692 16 C 0.114 3.886 17 H 0.090 0.910 18 C -0.122 4.122 19 C -0.070 4.070 20 H 0.108 0.892 21 C -0.111 4.111 22 C 0.118 3.882 23 F -0.136 7.136 24 C -0.199 4.199 25 C 0.106 3.894 26 F -0.143 7.143 27 C -0.156 4.156 28 C -0.056 4.056 29 C -0.139 4.139 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.385 0.615 38 H -0.279 1.279 39 H -0.307 1.307 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.419 0.581 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.151 0.849 46 H 0.160 0.840 47 H 0.170 0.830 48 H 0.071 0.929 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 -4.356 1.997 5.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 O -0.227 6.227 4 C 0.077 3.923 5 C -0.185 4.185 6 C -0.077 4.077 7 C -0.159 4.159 8 C -0.190 4.190 9 O -0.359 6.359 10 Si 0.676 3.324 11 C -0.091 4.091 12 C -0.220 4.220 13 C 0.305 3.695 14 O -0.445 6.445 15 N -0.346 5.346 16 C 0.009 3.991 17 H 0.108 0.892 18 C -0.160 4.160 19 C -0.088 4.088 20 H 0.127 0.873 21 C -0.112 4.112 22 C 0.099 3.901 23 F -0.114 7.114 24 C -0.218 4.218 25 C 0.087 3.913 26 F -0.122 7.122 27 C -0.175 4.175 28 C -0.074 4.074 29 C -0.177 4.177 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.234 0.766 38 H -0.205 1.205 39 H -0.236 1.236 40 H 0.171 0.829 41 H 0.180 0.820 42 H 0.257 0.743 43 H 0.129 0.871 44 H 0.108 0.892 45 H 0.168 0.832 46 H 0.178 0.822 47 H 0.188 0.812 48 H 0.089 0.911 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.999 -3.732 1.976 5.179 hybrid contribution 0.698 -0.540 -0.065 0.885 sum -2.300 -4.272 1.912 5.215 Atomic orbital electron populations 1.22394 0.90317 1.05755 1.04619 1.22444 0.97291 0.82106 0.97809 1.86193 1.81464 1.27031 1.27968 1.19233 0.95768 0.92902 0.84426 1.20624 1.04340 0.94412 0.99141 1.20907 0.96452 0.99747 0.90617 1.20284 1.03608 0.96108 0.95872 1.25239 0.86327 1.08151 0.99312 1.86570 1.19099 1.37454 1.92821 0.94153 0.89337 0.74878 0.74008 1.21056 0.96582 0.93570 0.97937 1.21487 1.06386 1.02696 0.91478 1.20526 0.79534 0.82480 0.86930 1.90757 1.38928 1.66816 1.48028 1.45416 1.53274 1.10503 1.25366 1.21888 0.97951 0.93278 0.86003 0.89168 1.23422 0.95482 0.93238 1.03861 1.21558 0.98676 0.91447 0.97145 0.87341 1.19972 0.96860 0.96721 0.97685 1.17276 0.93988 0.96042 0.82814 1.91503 1.78516 1.95854 1.45535 1.21174 1.04522 1.01273 0.94863 1.17580 0.98024 0.86966 0.88718 1.91524 1.93511 1.57038 1.70091 1.21510 0.98643 0.94428 1.02895 1.21067 0.98141 0.97071 0.91130 1.23592 0.99063 0.95687 0.99395 0.92170 0.87223 0.89181 0.85444 0.85620 0.84863 0.86040 0.76550 1.20525 1.23583 0.82933 0.82043 0.74293 0.87121 0.89243 0.83165 0.82207 0.81236 0.91067 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.35 9.06 71.98 0.65 2.00 16 2 C 0.06 -0.16 2.65 29.85 0.08 -0.08 16 3 O -0.31 -1.81 9.33 -73.41 -0.69 -2.49 16 4 C 0.12 0.39 6.60 22.51 0.15 0.54 16 5 C -0.17 -0.77 9.99 22.37 0.22 -0.55 16 6 C -0.06 -0.15 9.60 22.25 0.21 0.07 16 7 C -0.16 0.04 5.39 -19.85 -0.11 -0.07 16 8 C -0.08 0.08 2.82 71.24 0.20 0.28 16 9 O -0.55 -1.48 12.77 -148.98 -1.90 -3.38 16 10 Si 0.77 -2.59 29.78 68.60 2.04 -0.55 16 11 C -0.07 0.24 8.66 22.25 0.19 0.43 16 12 C -0.20 0.55 8.24 22.37 0.18 0.73 16 13 C 0.52 0.97 7.23 87.66 0.63 1.61 16 14 O -0.57 -7.45 16.10 15.99 0.26 -7.20 16 15 N -0.69 4.02 5.16 -440.03 -2.27 1.76 16 16 C 0.11 -0.59 4.32 45.52 0.20 -0.39 16 17 H 0.09 -0.04 7.46 -2.39 -0.02 -0.06 16 18 C -0.12 1.10 7.29 31.12 0.23 1.33 16 19 C -0.07 0.53 3.78 -11.01 -0.04 0.49 16 20 H 0.11 -0.89 7.45 -2.39 -0.02 -0.90 16 21 C -0.11 0.50 5.29 -19.82 -0.10 0.39 16 22 C 0.12 -0.09 7.24 22.37 0.16 0.07 16 23 F -0.14 -0.09 16.36 44.97 0.74 0.64 16 24 C -0.20 -0.04 10.01 22.36 0.22 0.18 16 25 C 0.11 0.06 7.30 22.37 0.16 0.22 16 26 F -0.14 -0.55 17.27 44.97 0.78 0.22 16 27 C -0.16 0.60 10.02 22.32 0.22 0.83 16 28 C -0.06 0.36 8.61 22.25 0.19 0.55 16 29 C -0.14 0.91 7.25 31.12 0.23 1.13 16 30 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.11 -1.54 7.56 -2.39 -0.02 -1.56 16 32 H 0.09 -0.82 6.91 -2.38 -0.02 -0.84 16 33 H 0.13 -1.08 6.31 -2.39 -0.02 -1.10 16 34 H 0.13 0.66 8.06 -2.91 -0.02 0.64 16 35 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.12 -0.26 7.96 -2.38 -0.02 -0.28 16 37 H 0.39 -1.10 8.70 -74.06 -0.64 -1.75 16 38 H -0.28 0.09 7.11 99.48 0.71 0.80 16 39 H -0.31 -1.57 7.11 99.48 0.71 -0.86 16 40 H 0.15 -1.27 4.87 -2.91 -0.01 -1.28 16 41 H 0.16 -1.51 5.43 -2.91 -0.02 -1.52 16 42 H 0.42 -5.27 8.12 -92.71 -0.75 -6.02 16 43 H 0.11 -1.14 7.72 -2.39 -0.02 -1.15 16 44 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H 0.15 -0.18 8.06 -2.91 -0.02 -0.20 16 46 H 0.16 -1.18 8.06 -2.91 -0.02 -1.20 16 47 H 0.17 -1.97 6.65 -2.91 -0.02 -1.98 16 48 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.11 -0.89 6.31 -2.39 -0.02 -0.91 16 Total: 0.00 -25.23 410.46 2.52 -22.71 By element: Atomic # 1 Polarization: -21.16 SS G_CDS: -0.32 Total: -21.49 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 3.89 Total: 9.77 kcal Atomic # 7 Polarization: 4.02 SS G_CDS: -2.27 Total: 1.76 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -2.33 Total: -13.07 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 1.51 Total: 0.87 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.04 Total: -0.55 kcal Total: -25.23 2.52 -22.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.666 kcal (2) G-P(sol) polarization free energy of solvation -25.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds