Wall clock time and date at job start Sun Mar 7 2021 00:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86308 * 109.46888 * 2 1 4 4 C 1.50704 * 109.47622 * 119.99500 * 2 1 3 5 5 C 1.35447 * 126.07109 * 244.98154 * 4 2 1 6 6 N 1.35536 * 108.87174 * 179.97438 * 5 4 2 7 7 C 1.37650 * 108.64189 * 359.97438 * 6 5 4 8 8 C 1.46680 * 126.23030 * 180.02562 * 7 6 5 9 9 O 1.21696 * 120.00310 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00008 * 0.02601 * 8 7 6 11 11 C 1.46500 * 119.99859 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.85307 * 23.80418 * 11 10 8 13 13 C 1.53777 * 113.61486 * 155.00091 * 11 10 8 14 14 C 1.53777 * 87.08440 * 89.20086 * 13 11 10 15 15 H 1.09003 * 113.61161 * 270.80240 * 14 13 11 16 16 C 1.50698 * 113.61816 * 139.98215 * 14 13 11 17 17 C 1.38181 * 119.98659 * 300.27739 * 16 14 13 18 18 C 1.38232 * 120.05087 * 180.27979 * 17 16 14 19 19 C 1.38461 * 120.02210 * 359.44062 * 18 17 16 20 20 F 1.35099 * 120.01216 * 180.25525 * 19 18 17 21 21 C 1.38435 * 119.97434 * 0.28104 * 19 18 17 22 22 C 1.38397 * 119.95201 * 0.02562 * 21 19 18 23 23 F 1.35097 * 120.01803 * 180.02562 * 22 21 19 24 24 C 1.53780 * 113.69004 * 252.53633 * 11 10 8 25 25 C 1.37870 * 107.53598 * 0.26485 * 7 6 5 26 26 H 0.96702 * 114.00138 * 299.99968 * 1 2 3 27 27 H 1.09001 * 109.47604 * 239.99730 * 2 1 3 28 28 H 1.48502 * 109.99727 * 299.99568 * 3 2 1 29 29 H 1.48493 * 109.99953 * 61.32208 * 3 2 1 30 30 H 1.07999 * 125.56400 * 359.97438 * 5 4 2 31 31 H 0.97003 * 125.67866 * 179.97438 * 6 5 4 32 32 H 0.96995 * 120.00149 * 359.97438 * 10 8 7 33 33 H 1.09000 * 113.61457 * 334.64748 * 13 11 10 34 34 H 1.09004 * 113.61895 * 203.74705 * 13 11 10 35 35 H 1.08000 * 119.97812 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.99231 * 179.72613 * 18 17 16 37 37 H 1.08001 * 120.02485 * 179.97438 * 21 19 18 38 38 H 1.09007 * 113.61769 * 156.32867 * 24 11 10 39 39 H 1.08999 * 113.61704 * 25.42311 * 24 11 10 40 40 H 1.08004 * 126.45500 * 179.73192 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.6338 -0.1498 2.2439 6 7 2.9052 -1.1027 3.1688 7 6 2.3673 -2.2958 2.7422 8 6 2.4341 -3.5790 3.4495 9 8 1.9165 -4.5683 2.9655 10 7 3.0687 -3.6625 4.6356 11 6 3.1359 -4.9443 5.3418 12 1 3.0264 -5.8005 4.6762 13 6 4.3335 -5.0578 6.2996 14 6 3.4251 -4.4510 7.3819 15 1 3.4545 -3.3619 7.4162 16 6 3.5965 -5.0841 8.7386 17 6 3.3598 -6.4352 8.9052 18 6 3.5110 -7.0162 10.1503 19 6 3.9111 -6.2469 11.2298 20 9 4.0638 -6.8159 12.4455 21 6 4.1541 -4.8942 11.0628 22 6 3.9962 -4.3124 9.8171 23 9 4.2335 -2.9927 9.6526 24 6 2.2348 -5.0122 6.5861 25 6 1.7590 -2.0661 1.5264 26 1 -0.3933 0.4417 0.7651 27 1 1.7923 -0.5139 -0.8899 28 1 1.5614 2.4679 -1.2086 29 1 1.5878 2.4586 1.2242 30 1 2.9294 0.8872 2.3051 31 1 3.3967 -0.9666 3.9939 32 1 3.4816 -2.8741 5.0213 33 1 5.1735 -4.4193 6.0261 34 1 4.6318 -6.0858 6.5060 35 1 3.0517 -7.0369 8.0629 36 1 3.3215 -8.0715 10.2803 37 1 4.4658 -4.2933 11.9043 38 1 1.9592 -6.0276 6.8708 39 1 1.3804 -4.3367 6.5439 40 1 1.2444 -2.7954 0.9183 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:04:44 Heat of formation + Delta-G solvation = -53.995962 kcal Electronic energy + Delta-G solvation = -27341.746245 eV Core-core repulsion = 22953.737710 eV Total energy + Delta-G solvation = -4388.008536 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.112 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.12364 -50.04482 -42.56034 -41.51559 -40.01091 -38.70034 -37.75773 -34.76724 -32.64517 -32.02109 -31.64689 -30.60075 -26.97720 -26.92335 -26.15297 -24.65423 -24.02512 -22.91250 -21.31883 -20.91293 -20.51686 -20.00574 -19.36660 -18.32478 -17.67460 -17.56397 -17.09289 -17.00469 -16.89803 -16.67960 -16.44632 -16.37433 -15.90373 -15.75836 -15.56690 -15.38444 -15.31446 -14.80552 -14.62832 -14.48853 -14.08809 -13.92912 -13.83436 -13.70442 -13.61928 -13.44601 -12.95046 -12.70355 -12.41869 -12.26320 -11.92167 -11.81727 -11.52126 -11.20987 -10.49191 -10.31038 -10.20860 -10.00848 -9.70615 -9.35872 -4.96588 -0.23500 -0.15814 0.36111 1.30870 1.50075 1.58129 1.84048 1.95346 2.00642 2.14784 2.31129 2.72631 3.11573 3.29507 3.32824 3.42578 3.48406 3.50063 3.64350 3.71018 3.74947 3.85551 3.86520 3.99722 4.01005 4.30696 4.39479 4.47147 4.55346 4.61012 4.65753 4.70897 4.72403 4.77508 4.79943 4.85785 4.90748 4.91588 5.01963 5.08894 5.36740 5.55721 5.60123 5.75859 6.14995 6.34164 6.53305 7.05918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.040 4.040 3 Si 0.683 3.317 4 C -0.209 4.209 5 C 0.037 3.963 6 N -0.535 5.535 7 C -0.060 4.060 8 C 0.594 3.406 9 O -0.521 6.521 10 N -0.716 5.716 11 C 0.122 3.878 12 H 0.112 0.888 13 C -0.134 4.134 14 C -0.075 4.075 15 H 0.102 0.898 16 C -0.115 4.115 17 C -0.060 4.060 18 C -0.158 4.158 19 C 0.128 3.872 20 F -0.130 7.130 21 C -0.190 4.190 22 C 0.133 3.867 23 F -0.130 7.130 24 C -0.143 4.143 25 C -0.073 4.073 26 H 0.374 0.626 27 H 0.116 0.884 28 H -0.258 1.258 29 H -0.261 1.261 30 H 0.176 0.824 31 H 0.418 0.582 32 H 0.395 0.605 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 2.004 1.953 5.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.151 4.151 3 Si 0.584 3.416 4 C -0.215 4.215 5 C -0.100 4.100 6 N -0.132 5.132 7 C -0.172 4.172 8 C 0.382 3.618 9 O -0.395 6.395 10 N -0.367 5.367 11 C 0.017 3.983 12 H 0.130 0.870 13 C -0.172 4.172 14 C -0.094 4.094 15 H 0.120 0.880 16 C -0.116 4.116 17 C -0.078 4.078 18 C -0.177 4.177 19 C 0.108 3.892 20 F -0.108 7.108 21 C -0.209 4.209 22 C 0.113 3.887 23 F -0.108 7.108 24 C -0.181 4.181 25 C -0.100 4.100 26 H 0.221 0.779 27 H 0.133 0.867 28 H -0.183 1.183 29 H -0.186 1.186 30 H 0.193 0.807 31 H 0.255 0.745 32 H 0.229 0.771 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.863 1.796 1.233 4.435 hybrid contribution -0.496 0.570 1.626 1.793 sum 3.367 2.366 2.859 5.011 Atomic orbital electron populations 1.86612 1.18056 1.79852 1.49098 1.24331 0.83373 1.09976 0.97416 0.95391 0.91287 0.74511 0.80384 1.19844 1.07618 0.95068 0.99018 1.21907 1.02806 0.94721 0.90585 1.41929 1.43782 1.07863 1.19586 1.20372 1.11108 0.86036 0.99664 1.17035 0.78017 0.86764 0.79982 1.90885 1.45891 1.36108 1.66664 1.45541 1.57908 1.11801 1.21473 1.21838 0.96323 0.87124 0.93044 0.87043 1.23456 0.96727 1.02952 0.94086 1.21555 0.98041 1.00224 0.89540 0.88024 1.19784 1.02909 0.94215 0.94733 1.20780 0.96643 0.93269 0.97074 1.21272 1.03043 1.01477 0.91939 1.17344 1.00067 0.90722 0.81017 1.91563 1.92978 1.84773 1.41485 1.21081 1.06872 0.94804 0.98180 1.17136 1.00163 0.78143 0.93233 1.91521 1.91774 1.31455 1.96041 1.23595 0.96964 1.02752 0.94797 1.21240 0.99105 0.95692 0.93915 0.77865 0.86651 1.18292 1.18564 0.80727 0.74452 0.77134 0.90241 0.87910 0.83630 0.83691 0.83292 0.88253 0.90369 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.89 12.88 -35.23 -0.45 -1.35 16 2 C -0.04 0.01 3.02 36.01 0.11 0.12 16 3 Si 0.68 -1.23 30.60 -169.99 -5.20 -6.43 16 4 C -0.21 0.03 5.43 -105.02 -0.57 -0.54 16 5 C 0.04 -0.09 10.45 -16.91 -0.18 -0.27 16 6 N -0.54 1.53 5.99 -9.39 -0.06 1.47 16 7 C -0.06 -0.03 7.06 -81.98 -0.58 -0.61 16 8 C 0.59 0.94 7.79 -12.85 -0.10 0.84 16 9 O -0.52 -2.95 16.48 5.19 0.09 -2.87 16 10 N -0.72 1.34 5.26 -54.32 -0.29 1.05 16 11 C 0.12 -0.24 4.32 -67.12 -0.29 -0.53 16 12 H 0.11 -0.05 7.46 -51.93 -0.39 -0.44 16 13 C -0.13 0.47 7.29 -25.92 -0.19 0.28 16 14 C -0.08 0.21 3.78 -90.96 -0.34 -0.13 16 15 H 0.10 -0.29 7.45 -51.93 -0.39 -0.68 16 16 C -0.12 0.18 5.30 -104.55 -0.55 -0.38 16 17 C -0.06 0.14 8.59 -39.60 -0.34 -0.20 16 18 C -0.16 0.24 10.03 -39.50 -0.40 -0.16 16 19 C 0.13 0.02 7.30 -39.43 -0.29 -0.27 16 20 F -0.13 -0.20 17.27 2.25 0.04 -0.16 16 21 C -0.19 0.01 10.01 -39.45 -0.39 -0.38 16 22 C 0.13 -0.02 7.25 -39.43 -0.29 -0.30 16 23 F -0.13 -0.08 16.36 2.25 0.04 -0.04 16 24 C -0.14 0.35 7.26 -25.92 -0.19 0.16 16 25 C -0.07 -0.13 10.59 -39.12 -0.41 -0.55 16 26 H 0.37 -0.47 8.70 45.56 0.40 -0.07 16 27 H 0.12 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 29 H -0.26 0.08 7.11 56.52 0.40 0.48 16 30 H 0.18 -0.90 6.21 -52.49 -0.33 -1.23 16 31 H 0.42 -2.56 8.19 -40.82 -0.33 -2.90 16 32 H 0.39 -1.82 7.83 -40.82 -0.32 -2.14 16 33 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 34 H 0.10 -0.42 7.71 -51.93 -0.40 -0.82 16 35 H 0.15 -0.67 6.67 -52.49 -0.35 -1.02 16 36 H 0.15 -0.45 8.06 -52.49 -0.42 -0.87 16 37 H 0.15 -0.16 8.06 -52.49 -0.42 -0.58 16 38 H 0.10 -0.33 6.32 -51.93 -0.33 -0.66 16 39 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 40 H 0.15 0.42 8.06 -52.48 -0.42 -0.01 16 LS Contribution 349.46 15.07 5.27 5.27 Total: 0.00 -9.00 349.46 -9.73 -18.73 By element: Atomic # 1 Polarization: -8.62 SS G_CDS: -4.16 Total: -12.78 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -5.00 Total: -2.89 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -0.34 Total: 2.52 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.37 Total: -4.21 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.08 Total: -0.20 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: -5.20 Total: -6.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -9.00 -9.73 -18.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.268 kcal (2) G-P(sol) polarization free energy of solvation -8.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds