Wall clock time and date at job start Sun Mar 7 2021 00:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86308 * 109.46888 * 2 1 4 4 C 1.50704 * 109.47622 * 119.99500 * 2 1 3 5 5 C 1.35447 * 126.07109 * 244.98154 * 4 2 1 6 6 N 1.35536 * 108.87174 * 179.97438 * 5 4 2 7 7 C 1.37650 * 108.64189 * 359.97438 * 6 5 4 8 8 C 1.46680 * 126.23030 * 180.02562 * 7 6 5 9 9 O 1.21696 * 120.00310 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00008 * 0.02601 * 8 7 6 11 11 C 1.46500 * 119.99859 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.85307 * 23.80418 * 11 10 8 13 13 C 1.53777 * 113.61486 * 155.00091 * 11 10 8 14 14 C 1.53777 * 87.08440 * 89.20086 * 13 11 10 15 15 H 1.09003 * 113.61161 * 270.80240 * 14 13 11 16 16 C 1.50698 * 113.61816 * 139.98215 * 14 13 11 17 17 C 1.38181 * 119.98659 * 300.27739 * 16 14 13 18 18 C 1.38232 * 120.05087 * 180.27979 * 17 16 14 19 19 C 1.38461 * 120.02210 * 359.44062 * 18 17 16 20 20 F 1.35099 * 120.01216 * 180.25525 * 19 18 17 21 21 C 1.38435 * 119.97434 * 0.28104 * 19 18 17 22 22 C 1.38397 * 119.95201 * 0.02562 * 21 19 18 23 23 F 1.35097 * 120.01803 * 180.02562 * 22 21 19 24 24 C 1.53780 * 113.69004 * 252.53633 * 11 10 8 25 25 C 1.37870 * 107.53598 * 0.26485 * 7 6 5 26 26 H 0.96702 * 114.00138 * 299.99968 * 1 2 3 27 27 H 1.09001 * 109.47604 * 239.99730 * 2 1 3 28 28 H 1.48502 * 109.99727 * 299.99568 * 3 2 1 29 29 H 1.48493 * 109.99953 * 61.32208 * 3 2 1 30 30 H 1.07999 * 125.56400 * 359.97438 * 5 4 2 31 31 H 0.97003 * 125.67866 * 179.97438 * 6 5 4 32 32 H 0.96995 * 120.00149 * 359.97438 * 10 8 7 33 33 H 1.09000 * 113.61457 * 334.64748 * 13 11 10 34 34 H 1.09004 * 113.61895 * 203.74705 * 13 11 10 35 35 H 1.08000 * 119.97812 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.99231 * 179.72613 * 18 17 16 37 37 H 1.08001 * 120.02485 * 179.97438 * 21 19 18 38 38 H 1.09007 * 113.61769 * 156.32867 * 24 11 10 39 39 H 1.08999 * 113.61704 * 25.42311 * 24 11 10 40 40 H 1.08004 * 126.45500 * 179.73192 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.6338 -0.1498 2.2439 6 7 2.9052 -1.1027 3.1688 7 6 2.3673 -2.2958 2.7422 8 6 2.4341 -3.5790 3.4495 9 8 1.9165 -4.5683 2.9655 10 7 3.0687 -3.6625 4.6356 11 6 3.1359 -4.9443 5.3418 12 1 3.0264 -5.8005 4.6762 13 6 4.3335 -5.0578 6.2996 14 6 3.4251 -4.4510 7.3819 15 1 3.4545 -3.3619 7.4162 16 6 3.5965 -5.0841 8.7386 17 6 3.3598 -6.4352 8.9052 18 6 3.5110 -7.0162 10.1503 19 6 3.9111 -6.2469 11.2298 20 9 4.0638 -6.8159 12.4455 21 6 4.1541 -4.8942 11.0628 22 6 3.9962 -4.3124 9.8171 23 9 4.2335 -2.9927 9.6526 24 6 2.2348 -5.0122 6.5861 25 6 1.7590 -2.0661 1.5264 26 1 -0.3933 0.4417 0.7651 27 1 1.7923 -0.5139 -0.8899 28 1 1.5614 2.4679 -1.2086 29 1 1.5878 2.4586 1.2242 30 1 2.9294 0.8872 2.3051 31 1 3.3967 -0.9666 3.9939 32 1 3.4816 -2.8741 5.0213 33 1 5.1735 -4.4193 6.0261 34 1 4.6318 -6.0858 6.5060 35 1 3.0517 -7.0369 8.0629 36 1 3.3215 -8.0715 10.2803 37 1 4.4658 -4.2933 11.9043 38 1 1.9592 -6.0276 6.8708 39 1 1.3804 -4.3367 6.5439 40 1 1.2444 -2.7954 0.9183 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:04:43 Heat of formation + Delta-G solvation = -53.486620 kcal Electronic energy + Delta-G solvation = -27341.724159 eV Core-core repulsion = 22953.737710 eV Total energy + Delta-G solvation = -4387.986449 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.112 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.09338 -50.05929 -42.50906 -41.39036 -40.01718 -38.65995 -37.79397 -34.77578 -32.59164 -31.91633 -31.56207 -30.56063 -26.87321 -26.75594 -26.04977 -24.57033 -23.96788 -22.82189 -21.31051 -20.84525 -20.42675 -19.91441 -19.31259 -18.25502 -17.64846 -17.53840 -17.06857 -16.91268 -16.80330 -16.63888 -16.44870 -16.37957 -15.93277 -15.72771 -15.53235 -15.26525 -15.22027 -14.75126 -14.56953 -14.48100 -13.98816 -13.85868 -13.78820 -13.59350 -13.47205 -13.42199 -12.86839 -12.58060 -12.45156 -12.10028 -11.80923 -11.77162 -11.37875 -11.32543 -10.47787 -10.28049 -10.11243 -9.96777 -9.61746 -9.30059 -4.83229 -0.14544 -0.05018 0.35271 1.39800 1.55168 1.68205 1.89636 2.09110 2.13144 2.23358 2.26917 2.80446 3.27026 3.42600 3.46284 3.56506 3.60930 3.65078 3.77842 3.85186 3.91774 3.98974 4.05016 4.15085 4.16594 4.35638 4.56929 4.66613 4.71892 4.73450 4.80046 4.82349 4.86813 4.89369 4.91122 4.97684 5.03118 5.05859 5.08078 5.22236 5.50252 5.59237 5.70883 5.73563 6.33086 6.50333 6.63408 7.04153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.061 4.061 3 Si 0.787 3.213 4 C -0.224 4.224 5 C 0.060 3.940 6 N -0.516 5.516 7 C -0.069 4.069 8 C 0.592 3.408 9 O -0.572 6.572 10 N -0.699 5.699 11 C 0.114 3.886 12 H 0.095 0.905 13 C -0.121 4.121 14 C -0.070 4.070 15 H 0.105 0.895 16 C -0.112 4.112 17 C -0.056 4.056 18 C -0.155 4.155 19 C 0.107 3.893 20 F -0.143 7.143 21 C -0.199 4.199 22 C 0.117 3.883 23 F -0.136 7.136 24 C -0.139 4.139 25 C -0.103 4.103 26 H 0.384 0.616 27 H 0.109 0.891 28 H -0.314 1.314 29 H -0.268 1.268 30 H 0.213 0.787 31 H 0.437 0.563 32 H 0.410 0.590 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.171 0.829 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 2.975 2.747 6.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.169 4.169 3 Si 0.692 3.308 4 C -0.230 4.230 5 C -0.079 4.079 6 N -0.113 5.113 7 C -0.182 4.182 8 C 0.381 3.619 9 O -0.451 6.451 10 N -0.350 5.350 11 C 0.009 3.991 12 H 0.113 0.887 13 C -0.159 4.159 14 C -0.089 4.089 15 H 0.123 0.877 16 C -0.113 4.113 17 C -0.074 4.074 18 C -0.174 4.174 19 C 0.088 3.912 20 F -0.121 7.121 21 C -0.218 4.218 22 C 0.098 3.902 23 F -0.115 7.115 24 C -0.178 4.178 25 C -0.130 4.130 26 H 0.233 0.767 27 H 0.126 0.874 28 H -0.243 1.243 29 H -0.194 1.194 30 H 0.229 0.771 31 H 0.278 0.722 32 H 0.247 0.753 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.188 0.812 36 H 0.179 0.821 37 H 0.169 0.831 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.118 2.760 2.107 6.185 hybrid contribution -0.914 0.260 1.329 1.633 sum 4.204 3.020 3.436 6.213 Atomic orbital electron populations 1.86571 1.19478 1.80535 1.49982 1.24747 0.82578 1.12175 0.97382 0.94261 0.89417 0.70481 0.76690 1.19872 1.08861 0.94288 0.99990 1.22370 1.00526 0.95844 0.89124 1.41865 1.42812 1.06515 1.20100 1.20117 1.11898 0.86757 0.99459 1.17215 0.77641 0.86489 0.80564 1.90852 1.48346 1.37800 1.68133 1.45400 1.56611 1.12668 1.20308 1.21903 0.97814 0.86441 0.92946 0.88730 1.23423 0.96167 1.03761 0.92539 1.21543 0.97984 1.00394 0.88946 0.87723 1.19960 1.02040 0.94505 0.94776 1.21071 0.95717 0.93105 0.97467 1.21524 1.01980 1.02210 0.91679 1.17577 1.01450 0.91096 0.81105 1.91526 1.93277 1.84952 1.42357 1.21170 1.07104 0.94994 0.98546 1.17287 1.01205 0.78067 0.93667 1.91498 1.91981 1.31938 1.96079 1.23604 0.96583 1.03222 0.94377 1.21240 1.00339 0.96581 0.94856 0.76690 0.87355 1.24284 1.19372 0.77093 0.72215 0.75299 0.89357 0.86847 0.81159 0.82099 0.83142 0.87163 0.91471 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.65 12.88 -148.98 -1.92 -4.57 16 2 C -0.06 -0.01 3.02 71.24 0.22 0.21 16 3 Si 0.79 -3.59 30.60 68.60 2.10 -1.49 16 4 C -0.22 0.04 5.43 -20.12 -0.11 -0.07 16 5 C 0.06 -0.41 10.45 83.48 0.87 0.47 16 6 N -0.52 3.73 5.99 -183.62 -1.10 2.63 16 7 C -0.07 -0.11 7.06 40.35 0.28 0.17 16 8 C 0.59 2.52 7.79 86.45 0.67 3.19 16 9 O -0.57 -7.90 16.48 -4.33 -0.07 -7.97 16 10 N -0.70 2.78 5.26 -444.00 -2.34 0.44 16 11 C 0.11 -0.49 4.32 45.52 0.20 -0.29 16 12 H 0.09 -0.02 7.46 -2.39 -0.02 -0.03 16 13 C -0.12 1.03 7.29 31.12 0.23 1.26 16 14 C -0.07 0.48 3.78 -11.01 -0.04 0.44 16 15 H 0.10 -0.75 7.45 -2.39 -0.02 -0.77 16 16 C -0.11 0.46 5.30 -19.82 -0.10 0.35 16 17 C -0.06 0.35 8.59 22.25 0.19 0.54 16 18 C -0.16 0.59 10.03 22.32 0.22 0.81 16 19 C 0.11 0.06 7.30 22.37 0.16 0.23 16 20 F -0.14 -0.55 17.27 44.97 0.78 0.23 16 21 C -0.20 -0.08 10.01 22.35 0.22 0.15 16 22 C 0.12 -0.05 7.25 22.37 0.16 0.11 16 23 F -0.14 -0.14 16.36 44.97 0.74 0.59 16 24 C -0.14 0.78 7.26 31.12 0.23 1.01 16 25 C -0.10 -0.56 10.59 22.57 0.24 -0.32 16 26 H 0.38 -0.63 8.70 -74.06 -0.64 -1.27 16 27 H 0.11 0.06 7.96 -2.39 -0.02 0.05 16 28 H -0.31 -1.56 7.11 99.48 0.71 -0.85 16 29 H -0.27 0.86 7.11 99.48 0.71 1.56 16 30 H 0.21 -3.02 6.21 -2.91 -0.02 -3.04 16 31 H 0.44 -6.48 8.19 -92.71 -0.76 -7.24 16 32 H 0.41 -4.32 7.83 -92.71 -0.73 -5.05 16 33 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.11 -1.15 7.71 -2.38 -0.02 -1.17 16 35 H 0.17 -1.96 6.67 -2.91 -0.02 -1.98 16 36 H 0.16 -1.20 8.06 -2.91 -0.02 -1.22 16 37 H 0.15 -0.16 8.06 -2.91 -0.02 -0.18 16 38 H 0.11 -0.87 6.32 -2.38 -0.02 -0.88 16 39 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 Total: 0.00 -24.73 349.46 0.88 -23.85 By element: Atomic # 1 Polarization: -21.02 SS G_CDS: -0.95 Total: -21.97 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 3.64 Total: 8.25 kcal Atomic # 7 Polarization: 6.51 SS G_CDS: -3.44 Total: 3.08 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.99 Total: -12.54 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 1.51 Total: 0.82 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.10 Total: -1.49 kcal Total: -24.73 0.88 -23.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.634 kcal (2) G-P(sol) polarization free energy of solvation -24.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds