Wall clock time and date at job start Sun Mar 7 2021 00:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35530 * 125.68196 * 2 1 4 4 C 1.35447 * 108.87526 * 180.26445 * 3 2 1 5 5 C 1.50705 * 126.06757 * 179.74685 * 4 3 2 6 6 O 1.42907 * 109.47170 * 245.02936 * 5 4 3 7 7 Si 1.86296 * 109.47013 * 5.02861 * 5 4 3 8 8 C 1.39837 * 107.86525 * 359.77336 * 4 3 2 9 9 C 1.37650 * 125.67832 * 179.87368 * 2 1 3 10 10 C 1.46684 * 126.23299 * 0.02562 * 9 2 1 11 11 O 1.21689 * 119.99985 * 3.97767 * 10 9 2 12 12 N 1.34771 * 120.00216 * 183.98880 * 10 9 2 13 13 C 1.46499 * 120.00141 * 174.28037 * 12 10 9 14 14 H 1.08997 * 112.84560 * 23.80791 * 13 12 10 15 15 C 1.53788 * 113.61389 * 154.99846 * 13 12 10 16 16 C 1.53785 * 87.08083 * 89.11491 * 15 13 12 17 17 H 1.08990 * 113.61589 * 270.88474 * 16 15 13 18 18 C 1.50701 * 113.60935 * 139.97808 * 16 15 13 19 19 C 1.38452 * 119.98228 * 119.72945 * 18 16 15 20 20 F 1.35102 * 120.01421 * 0.02562 * 19 18 16 21 21 C 1.38446 * 119.97070 * 179.76970 * 19 18 16 22 22 C 1.38393 * 119.95058 * 0.52480 * 21 19 18 23 23 F 1.35097 * 120.01611 * 179.75230 * 22 21 19 24 24 C 1.38500 * 119.97450 * 359.72697 * 22 21 19 25 25 C 1.38182 * 120.02518 * 359.97438 * 24 22 21 26 26 C 1.53778 * 113.61743 * 252.49312 * 13 12 10 27 27 H 1.08998 * 109.47021 * 264.42842 * 1 2 3 28 28 H 1.09000 * 109.47500 * 24.42522 * 1 2 3 29 29 H 1.08998 * 109.47494 * 144.42780 * 1 2 3 30 30 H 1.08005 * 125.56332 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46647 * 125.02987 * 5 4 3 32 32 H 0.96699 * 113.99766 * 59.99664 * 6 5 4 33 33 H 1.48501 * 110.00054 * 58.68243 * 7 5 4 34 34 H 1.48501 * 109.99807 * 179.97438 * 7 5 4 35 35 H 1.08000 * 126.45550 * 179.97438 * 8 4 3 36 36 H 0.97004 * 119.99945 * 354.27897 * 12 10 9 37 37 H 1.08999 * 113.61390 * 203.66787 * 15 13 12 38 38 H 1.09001 * 113.61136 * 334.56731 * 15 13 12 39 39 H 1.08004 * 120.02126 * 180.25903 * 21 19 18 40 40 H 1.07995 * 119.98557 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.97698 * 180.02562 * 25 24 22 42 42 H 1.09003 * 113.60995 * 25.43576 * 26 13 12 43 43 H 1.09000 * 113.61404 * 156.25150 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 -0.0059 5 6 4.7536 1.6188 -0.0134 6 8 5.4706 1.4510 -1.2381 7 14 4.1934 3.3889 0.1407 8 6 3.5779 -0.6889 -0.0045 9 6 2.2678 -1.1181 0.0025 10 6 1.8123 -2.5125 0.0050 11 8 0.6241 -2.7646 -0.0680 12 7 2.7098 -3.5144 0.0885 13 6 2.2512 -4.8998 0.2173 14 1 1.2428 -5.0493 -0.1683 15 6 3.2665 -5.9350 -0.2951 16 6 3.8572 -5.9423 1.1248 17 1 4.6373 -5.1965 1.2770 18 6 4.2547 -7.3139 1.6061 19 6 5.5713 -7.5727 1.9474 20 9 6.4994 -6.5958 1.8496 21 6 5.9353 -8.8315 2.3941 22 6 4.9847 -9.8328 2.4885 23 9 5.3394 -11.0631 2.9195 24 6 3.6692 -9.5730 2.1416 25 6 3.3058 -8.3145 1.7017 26 6 2.4715 -5.4938 1.6185 27 1 -0.3633 -0.0998 1.0228 28 1 -0.3634 0.9357 -0.4249 29 1 -0.3634 -0.8359 -0.5978 30 1 1.9082 2.1236 0.0004 31 1 5.4035 1.3691 0.8253 32 1 4.9525 1.6561 -2.0284 33 1 3.4193 3.5693 1.3950 34 1 5.3692 4.2960 0.1352 35 1 4.4583 -1.3145 -0.0085 36 1 3.6595 -3.3182 0.0632 37 1 2.8145 -6.8835 -0.5849 38 1 3.9480 -5.5418 -1.0495 39 1 6.9613 -9.0331 2.6646 40 1 2.9273 -10.3544 2.2148 41 1 2.2797 -8.1127 1.4317 42 1 2.5112 -4.7445 2.4091 43 1 1.8011 -6.3209 1.8525 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:04:47 Heat of formation + Delta-G solvation = -45.857126 kcal Electronic energy + Delta-G solvation = -29670.614488 eV Core-core repulsion = 25127.421259 eV Total energy + Delta-G solvation = -4543.193228 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.128 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.08995 -50.05614 -42.57523 -41.38730 -39.98090 -38.63709 -37.64293 -34.91163 -33.73258 -31.98556 -31.67299 -30.56310 -28.31910 -26.74605 -26.37266 -25.64603 -24.47384 -23.83688 -22.77486 -21.30100 -20.68560 -20.11063 -19.34533 -18.84213 -18.23664 -17.84327 -17.27262 -17.06614 -16.90250 -16.75863 -16.64629 -16.57714 -16.38633 -15.86151 -15.68388 -15.51160 -15.46099 -15.20140 -15.10113 -14.80399 -14.36473 -14.07860 -13.99123 -13.80096 -13.57388 -13.48801 -13.44544 -13.24260 -13.14773 -12.85373 -12.57144 -12.27064 -12.06446 -11.93395 -11.75631 -11.34617 -11.18357 -10.30425 -10.20728 -10.10200 -9.70912 -9.61169 -9.26728 -4.94828 -0.13986 -0.04603 0.38310 1.42099 1.52009 1.56576 1.73921 2.05119 2.24556 2.27131 2.30161 2.81088 3.28249 3.43219 3.47527 3.58589 3.65794 3.67272 3.73312 3.84134 3.86031 3.92385 4.04190 4.06424 4.16047 4.25377 4.36884 4.40199 4.58086 4.66023 4.68611 4.72031 4.73090 4.76755 4.81888 4.83514 4.89620 4.90123 4.98916 5.06464 5.09470 5.19049 5.24794 5.52501 5.67353 5.71426 5.87703 6.16841 6.41863 6.90961 7.08086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.412 5.412 3 C 0.037 3.963 4 C -0.221 4.221 5 C -0.038 4.038 6 O -0.560 6.560 7 Si 0.781 3.219 8 C -0.114 4.114 9 C -0.079 4.079 10 C 0.591 3.409 11 O -0.579 6.579 12 N -0.694 5.694 13 C 0.118 3.882 14 H 0.099 0.901 15 C -0.123 4.123 16 C -0.073 4.073 17 H 0.099 0.901 18 C -0.111 4.111 19 C 0.114 3.886 20 F -0.138 7.138 21 C -0.199 4.199 22 C 0.107 3.893 23 F -0.142 7.142 24 C -0.154 4.154 25 C -0.055 4.055 26 C -0.137 4.137 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.203 0.797 31 H 0.100 0.900 32 H 0.393 0.607 33 H -0.284 1.284 34 H -0.306 1.306 35 H 0.153 0.847 36 H 0.413 0.587 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.066 0.934 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 1.794 -2.545 4.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.084 5.084 3 C -0.100 4.100 4 C -0.227 4.227 5 C -0.148 4.148 6 O -0.368 6.368 7 Si 0.688 3.312 8 C -0.140 4.140 9 C -0.192 4.192 10 C 0.381 3.619 11 O -0.461 6.461 12 N -0.344 5.344 13 C 0.013 3.987 14 H 0.117 0.883 15 C -0.161 4.161 16 C -0.091 4.091 17 H 0.117 0.883 18 C -0.112 4.112 19 C 0.095 3.905 20 F -0.117 7.117 21 C -0.218 4.218 22 C 0.088 3.912 23 F -0.121 7.121 24 C -0.172 4.172 25 C -0.072 4.072 26 C -0.176 4.176 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.103 0.897 30 H 0.220 0.780 31 H 0.117 0.883 32 H 0.243 0.757 33 H -0.211 1.211 34 H -0.234 1.234 35 H 0.171 0.829 36 H 0.250 0.750 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.168 0.832 40 H 0.181 0.819 41 H 0.191 0.809 42 H 0.085 0.915 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.515 2.100 -1.698 5.261 hybrid contribution 1.379 -0.651 0.699 1.678 sum -3.135 1.449 -0.999 3.596 Atomic orbital electron populations 1.22412 0.74712 1.06148 1.04386 1.44034 1.07688 1.04756 1.51875 1.22350 0.89671 0.92562 1.05429 1.19899 0.94296 0.94727 1.13822 1.24478 0.92576 1.08432 0.89351 1.86448 1.42206 1.92205 1.15958 0.94002 0.80298 0.72347 0.84594 1.21407 0.94309 0.95300 1.03023 1.20053 0.90880 0.87664 1.20623 1.17132 0.85331 0.84170 0.75304 1.90779 1.17471 1.85318 1.52491 1.45265 1.09974 1.05442 1.73749 1.21893 0.99686 0.79799 0.97341 0.88259 1.23434 0.97410 0.99829 0.95387 1.21534 0.97902 0.92376 0.97319 0.88256 1.19970 0.91190 0.97952 1.02127 1.17341 0.86627 0.85151 1.01379 1.91503 1.65195 1.61153 1.93848 1.21166 1.01976 0.92345 1.06345 1.17568 0.93986 0.79955 0.99695 1.91524 1.92763 1.40450 1.87334 1.21525 0.94445 0.99735 1.01544 1.21076 1.00749 0.90037 0.95376 1.23601 0.95758 1.01385 0.96809 0.90460 0.86314 0.89674 0.78007 0.88285 0.75721 1.21055 1.23371 0.82926 0.75022 0.86579 0.89825 0.83226 0.81907 0.80938 0.91534 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.15 10.47 127.77 1.34 1.19 16 2 N -0.41 -0.42 3.16 -534.33 -1.69 -2.11 16 3 C 0.04 -0.09 9.92 83.48 0.83 0.74 16 4 C -0.22 0.04 5.43 -20.12 -0.11 -0.07 16 5 C -0.04 0.03 3.02 71.24 0.22 0.25 16 6 O -0.56 -0.11 12.88 -148.98 -1.92 -2.03 16 7 Si 0.78 -2.73 30.60 68.60 2.10 -0.63 16 8 C -0.11 -0.16 10.29 22.57 0.23 0.07 16 9 C -0.08 -0.28 6.89 40.35 0.28 0.00 16 10 C 0.59 2.95 7.77 86.45 0.67 3.62 16 11 O -0.58 -6.20 14.36 -4.31 -0.06 -6.27 16 12 N -0.69 0.61 5.25 -444.00 -2.33 -1.72 16 13 C 0.12 -0.34 4.36 45.52 0.20 -0.14 16 14 H 0.10 -0.01 7.41 -2.39 -0.02 -0.03 16 15 C -0.12 0.77 7.29 31.12 0.23 1.00 16 16 C -0.07 0.32 3.78 -11.01 -0.04 0.28 16 17 H 0.10 -0.31 7.45 -2.39 -0.02 -0.33 16 18 C -0.11 0.25 5.29 -19.81 -0.10 0.15 16 19 C 0.11 0.20 7.25 22.37 0.16 0.36 16 20 F -0.14 -0.58 16.36 44.97 0.74 0.16 16 21 C -0.20 -0.40 10.01 22.36 0.22 -0.18 16 22 C 0.11 0.18 7.30 22.37 0.16 0.34 16 23 F -0.14 -0.66 17.27 44.97 0.78 0.11 16 24 C -0.15 0.48 10.03 22.32 0.22 0.70 16 25 C -0.05 0.29 8.61 22.25 0.19 0.48 16 26 C -0.14 0.61 7.25 31.12 0.23 0.84 16 27 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.12 -1.08 8.12 -2.39 -0.02 -1.10 16 29 H 0.08 0.14 6.57 -2.39 -0.02 0.13 16 30 H 0.20 -1.91 6.21 -2.91 -0.02 -1.93 16 31 H 0.10 0.09 7.96 -2.39 -0.02 0.08 16 32 H 0.39 -3.04 8.70 -74.06 -0.64 -3.69 16 33 H -0.28 -0.27 7.11 99.48 0.71 0.44 16 34 H -0.31 -1.49 7.11 99.48 0.71 -0.78 16 35 H 0.15 -0.23 7.45 -2.91 -0.02 -0.25 16 36 H 0.41 -1.84 7.60 -92.70 -0.70 -2.54 16 37 H 0.12 -1.02 7.72 -2.39 -0.02 -1.04 16 38 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.15 0.10 8.06 -2.91 -0.02 0.08 16 40 H 0.16 -1.16 8.06 -2.91 -0.02 -1.19 16 41 H 0.17 -1.92 6.65 -2.91 -0.02 -1.94 16 42 H 0.07 -0.11 8.14 -2.39 -0.02 -0.12 16 43 H 0.11 -0.87 6.31 -2.39 -0.02 -0.88 16 Total: 0.00 -21.00 367.74 2.31 -18.69 By element: Atomic # 1 Polarization: -15.61 SS G_CDS: -0.22 Total: -15.83 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 4.92 Total: 9.63 kcal Atomic # 7 Polarization: 0.19 SS G_CDS: -4.02 Total: -3.83 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -1.98 Total: -8.29 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 1.51 Total: 0.27 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.10 Total: -0.63 kcal Total: -21.00 2.31 -18.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.166 kcal (2) G-P(sol) polarization free energy of solvation -21.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds