Wall clock time and date at job start Sun Mar 7 2021 00:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.36448 * 120.29348 * 240.00048 * 4 2 1 6 6 C 1.40100 * 119.24923 * 179.97438 * 5 4 2 7 7 C 1.40852 * 132.85937 * 180.02562 * 6 5 4 8 8 C 1.46565 * 126.58697 * 0.03596 * 7 6 5 9 9 O 1.21722 * 119.99361 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00251 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00104 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.84966 * 23.80339 * 11 10 8 13 13 C 1.53780 * 113.61601 * 154.99929 * 11 10 8 14 14 C 1.53778 * 87.08132 * 89.11526 * 13 11 10 15 15 H 1.09000 * 113.61973 * 270.80134 * 14 13 11 16 16 C 1.50701 * 113.61405 * 139.97858 * 14 13 11 17 17 C 1.38189 * 119.99073 * 300.00308 * 16 14 13 18 18 C 1.38228 * 120.05232 * 179.97438 * 17 16 14 19 19 C 1.38450 * 120.02255 * 0.02562 * 18 17 16 20 20 F 1.35107 * 120.00879 * 179.97438 * 19 18 17 21 21 C 1.38440 * 119.97851 * 359.97438 * 19 18 17 22 22 C 1.38397 * 119.94407 * 359.72388 * 21 19 18 23 23 F 1.35110 * 120.00859 * 180.27258 * 22 21 19 24 24 C 1.53782 * 113.61613 * 252.49981 * 11 10 8 25 25 C 1.40555 * 106.83683 * 180.02562 * 7 6 5 26 26 N 1.30747 * 108.74445 * 359.97438 * 25 7 6 27 27 N 1.36569 * 120.23431 * 0.02562 * 6 5 4 28 28 C 1.36250 * 120.07829 * 0.02645 * 27 6 5 29 29 C 1.35186 * 120.70396 * 359.64810 * 28 27 6 30 30 H 0.96703 * 114.00193 * 300.00032 * 1 2 3 31 31 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 32 32 H 1.48501 * 109.99997 * 178.67824 * 3 2 1 33 33 H 1.48495 * 110.00011 * 300.00099 * 3 2 1 34 34 H 1.07999 * 120.37507 * 0.02562 * 5 4 2 35 35 H 0.97003 * 119.99997 * 0.02562 * 10 8 7 36 36 H 1.08995 * 113.61803 * 203.66775 * 13 11 10 37 37 H 1.09004 * 113.61448 * 334.48619 * 13 11 10 38 38 H 1.08004 * 119.97134 * 359.97438 * 17 16 14 39 39 H 1.08000 * 119.98637 * 179.97438 * 18 17 16 40 40 H 1.07997 * 120.02544 * 179.97438 * 21 19 18 41 41 H 1.08995 * 113.61256 * 25.42773 * 24 11 10 42 42 H 1.08997 * 113.61353 * 156.33557 * 24 11 10 43 43 H 1.08004 * 125.63140 * 179.97438 * 25 7 6 44 44 H 1.08001 * 119.64422 * 180.02562 * 28 27 6 45 45 H 1.08001 * 119.83881 * 180.31526 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7161 -1.8203 -1.1123 6 6 3.1705 -2.4639 -2.2708 7 6 3.9740 -3.6013 -2.4824 8 6 4.5739 -4.4514 -1.4502 9 8 4.3940 -4.1983 -0.2732 10 7 5.3247 -5.5131 -1.8041 11 6 5.9239 -6.3632 -0.7723 12 1 5.3917 -6.3146 0.1778 13 6 6.2094 -7.7982 -1.2456 14 6 7.5870 -7.2896 -1.7020 15 1 7.5963 -6.9118 -2.7243 16 6 8.7095 -8.2564 -1.4252 17 6 8.9803 -8.6472 -0.1277 18 6 10.0092 -9.5342 0.1276 19 6 10.7700 -10.0318 -0.9166 20 9 11.7759 -10.8984 -0.6667 21 6 10.4996 -9.6410 -2.2169 22 6 9.4652 -8.7577 -2.4719 23 9 9.1967 -8.3797 -3.7409 24 6 7.4458 -6.1887 -0.6376 25 6 4.0899 -3.7647 -3.8736 26 7 3.4171 -2.8129 -4.4660 27 7 2.8305 -1.9830 -3.5030 28 6 2.0472 -0.8734 -3.6106 29 6 1.5920 -0.2401 -2.5064 30 1 -0.3934 0.4417 0.7651 31 1 1.7923 -0.5139 0.8900 32 1 3.5346 1.7702 0.0322 33 1 1.5616 2.4679 -1.2084 34 1 2.9833 -2.1989 -0.1368 35 1 5.4684 -5.7145 -2.7421 36 1 6.2588 -8.5241 -0.4340 37 1 5.5689 -8.1231 -2.0656 38 1 8.3876 -8.2592 0.6876 39 1 10.2202 -9.8386 1.1421 40 1 11.0928 -10.0284 -3.0320 41 1 7.8044 -5.2137 -0.9676 42 1 7.8332 -6.4745 0.3403 43 1 4.6434 -4.5473 -4.3712 44 1 1.7822 -0.4993 -4.5885 45 1 0.9678 0.6354 -2.6080 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:04:56 Heat of formation + Delta-G solvation = 8.875953 kcal Electronic energy + Delta-G solvation = -33782.643907 eV Core-core repulsion = 28791.719751 eV Total energy + Delta-G solvation = -4990.924156 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.123 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -50.03271 -49.98407 -43.32081 -41.49071 -40.03372 -39.23780 -38.55761 -37.34357 -34.53245 -34.20746 -32.19492 -31.96791 -31.59211 -30.19778 -27.42702 -26.84977 -26.27356 -25.03629 -24.35664 -23.74910 -23.09424 -22.70355 -21.31409 -20.29158 -19.40899 -19.18514 -18.53147 -18.23158 -17.96077 -17.62841 -17.30496 -17.01697 -16.90457 -16.87588 -16.73663 -16.52990 -16.31133 -15.88074 -15.69844 -15.55848 -15.49944 -15.39913 -15.20641 -14.68976 -14.58664 -14.32190 -14.04619 -13.93281 -13.81177 -13.60006 -13.52164 -13.35475 -13.05548 -12.85310 -12.63604 -12.62261 -12.15921 -12.09561 -11.95293 -11.80226 -11.60635 -11.38662 -10.82126 -10.79478 -10.30658 -10.16783 -10.04114 -9.62623 -8.80069 -5.17856 -0.59913 -0.16075 -0.15217 -0.08745 0.97245 1.03350 1.11371 1.51128 1.84204 1.99465 2.16729 2.22388 2.53925 2.80019 2.94639 3.09407 3.23225 3.38529 3.38945 3.42599 3.56105 3.58623 3.58715 3.65586 3.77043 3.81892 3.83760 3.95708 3.97648 4.09790 4.12298 4.22069 4.29235 4.49265 4.52931 4.57950 4.65678 4.68650 4.72706 4.78297 4.82820 4.85840 4.92199 4.99044 5.02894 5.05333 5.11564 5.20737 5.23116 5.59174 5.61822 5.67404 6.28482 6.43778 6.56500 7.35217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.073 4.073 3 Si 0.703 3.297 4 C -0.030 4.030 5 C -0.093 4.093 6 C 0.168 3.832 7 C -0.316 4.316 8 C 0.606 3.394 9 O -0.547 6.547 10 N -0.712 5.712 11 C 0.125 3.875 12 H 0.109 0.891 13 C -0.135 4.135 14 C -0.076 4.076 15 H 0.103 0.897 16 C -0.114 4.114 17 C -0.060 4.060 18 C -0.159 4.159 19 C 0.127 3.873 20 F -0.130 7.130 21 C -0.190 4.190 22 C 0.133 3.867 23 F -0.129 7.129 24 C -0.143 4.143 25 C 0.120 3.880 26 N -0.311 5.311 27 N -0.265 5.265 28 C 0.114 3.886 29 C -0.145 4.145 30 H 0.388 0.612 31 H 0.083 0.917 32 H -0.255 1.255 33 H -0.249 1.249 34 H 0.165 0.835 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.199 0.801 44 H 0.179 0.821 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 2.903 3.009 4.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.182 4.182 3 Si 0.602 3.398 4 C -0.036 4.036 5 C -0.113 4.113 6 C 0.047 3.953 7 C -0.331 4.331 8 C 0.395 3.605 9 O -0.426 6.426 10 N -0.363 5.363 11 C 0.020 3.980 12 H 0.127 0.873 13 C -0.173 4.173 14 C -0.094 4.094 15 H 0.122 0.878 16 C -0.115 4.115 17 C -0.078 4.078 18 C -0.178 4.178 19 C 0.107 3.893 20 F -0.109 7.109 21 C -0.210 4.210 22 C 0.113 3.887 23 F -0.107 7.107 24 C -0.182 4.182 25 C -0.061 4.061 26 N -0.131 5.131 27 N -0.029 5.029 28 C -0.012 4.012 29 C -0.167 4.167 30 H 0.236 0.764 31 H 0.101 0.899 32 H -0.180 1.180 33 H -0.173 1.173 34 H 0.183 0.817 35 H 0.234 0.766 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.216 0.784 44 H 0.196 0.804 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.035 3.753 1.580 4.552 hybrid contribution 0.710 -1.232 -0.358 1.467 sum -1.324 2.520 1.221 3.098 Atomic orbital electron populations 1.86475 1.16439 1.81977 1.50040 1.24696 0.86361 1.10566 0.96616 0.95322 0.81364 0.75551 0.87587 1.19448 0.95902 0.93793 0.94418 1.20704 0.98344 0.93907 0.98326 1.19230 0.95699 0.94239 0.86103 1.19571 1.16243 1.03698 0.93563 1.16788 0.77044 0.79361 0.87286 1.90781 1.61609 1.71658 1.18525 1.45359 1.52528 1.28850 1.09574 1.21772 0.93606 0.89727 0.92917 0.87303 1.23453 0.95232 0.96335 1.02302 1.21568 0.92130 0.94920 1.00782 0.87842 1.19817 0.98644 1.00487 0.92546 1.20781 0.95995 0.95114 0.95914 1.21256 0.97084 0.99956 0.99500 1.17339 0.87652 0.91240 0.93051 1.91560 1.57696 1.66767 1.94858 1.21078 1.00633 1.01930 0.97322 1.17147 0.95686 0.96626 0.79199 1.91531 1.93030 1.89640 1.36515 1.23594 0.96363 0.98975 0.99235 1.24077 0.94340 0.95769 0.91935 1.77646 1.18412 1.06338 1.10742 1.46096 1.32102 1.18907 1.05805 1.21592 0.92316 0.85406 1.01898 1.20847 1.02704 1.02671 0.90439 0.76394 0.89924 1.17983 1.17274 0.81723 0.76634 0.88131 0.90186 0.83651 0.83763 0.83337 0.90388 0.88490 0.78418 0.80433 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.78 12.75 -35.23 -0.45 0.33 16 2 C -0.07 0.10 2.81 36.01 0.10 0.20 16 3 Si 0.70 -1.71 31.98 -169.99 -5.44 -7.14 16 4 C -0.03 -0.04 4.53 -104.55 -0.47 -0.51 16 5 C -0.09 -0.25 9.35 -39.53 -0.37 -0.62 16 6 C 0.17 0.63 6.76 -84.07 -0.57 0.06 16 7 C -0.32 -0.91 6.17 -104.68 -0.65 -1.56 16 8 C 0.61 1.80 7.78 -12.91 -0.10 1.70 16 9 O -0.55 -3.26 15.30 5.17 0.08 -3.18 16 10 N -0.71 0.28 5.25 -54.35 -0.29 -0.01 16 11 C 0.13 -0.13 4.32 -67.12 -0.29 -0.42 16 12 H 0.11 0.04 7.46 -51.93 -0.39 -0.35 16 13 C -0.14 0.34 7.29 -25.92 -0.19 0.15 16 14 C -0.08 0.14 3.78 -90.96 -0.34 -0.20 16 15 H 0.10 -0.18 7.45 -51.93 -0.39 -0.57 16 16 C -0.11 0.09 5.29 -104.55 -0.55 -0.46 16 17 C -0.06 0.11 8.61 -39.60 -0.34 -0.23 16 18 C -0.16 0.15 10.02 -39.51 -0.40 -0.24 16 19 C 0.13 0.09 7.30 -39.43 -0.29 -0.20 16 20 F -0.13 -0.27 17.27 2.25 0.04 -0.23 16 21 C -0.19 -0.11 10.01 -39.45 -0.39 -0.50 16 22 C 0.13 0.08 7.24 -39.43 -0.29 -0.20 16 23 F -0.13 -0.19 16.36 2.25 0.04 -0.15 16 24 C -0.14 0.24 7.25 -25.91 -0.19 0.05 16 25 C 0.12 0.14 11.44 -17.14 -0.20 -0.05 16 26 N -0.31 -1.05 12.57 30.75 0.39 -0.66 16 27 N -0.26 -0.85 3.86 -10.54 -0.04 -0.89 16 28 C 0.11 0.09 11.17 -16.68 -0.19 -0.10 16 29 C -0.15 -0.06 8.67 -39.95 -0.35 -0.40 16 30 H 0.39 -2.48 8.74 45.56 0.40 -2.08 16 31 H 0.08 -0.22 7.71 -51.93 -0.40 -0.62 16 32 H -0.26 -0.25 7.11 56.52 0.40 0.15 16 33 H -0.25 0.03 7.08 56.52 0.40 0.44 16 34 H 0.17 0.42 7.01 -52.49 -0.37 0.05 16 35 H 0.40 -1.12 7.62 -40.82 -0.31 -1.44 16 36 H 0.10 -0.32 7.72 -51.93 -0.40 -0.72 16 37 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.15 -0.58 6.65 -52.48 -0.35 -0.93 16 39 H 0.14 -0.38 8.06 -52.49 -0.42 -0.80 16 40 H 0.15 -0.07 8.06 -52.49 -0.42 -0.49 16 41 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 42 H 0.10 -0.26 6.31 -51.93 -0.33 -0.59 16 43 H 0.20 -0.62 7.46 -52.48 -0.39 -1.02 16 44 H 0.18 -0.38 8.06 -52.49 -0.42 -0.80 16 45 H 0.16 -0.24 7.54 -52.49 -0.40 -0.64 16 LS Contribution 391.48 15.07 5.90 5.90 Total: 0.00 -10.60 391.48 -10.46 -21.06 By element: Atomic # 1 Polarization: -6.85 SS G_CDS: -4.63 Total: -11.48 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -6.05 Total: -3.55 kcal Atomic # 7 Polarization: -1.62 SS G_CDS: 0.06 Total: -1.56 kcal Atomic # 8 Polarization: -2.48 SS G_CDS: -0.37 Total: -2.85 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.08 Total: -0.38 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -5.44 Total: -7.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -10.60 -10.46 -21.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.938 kcal (2) G-P(sol) polarization free energy of solvation -10.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds