Wall clock time and date at job start Sun Mar 7 2021 00:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.36448 * 120.29348 * 240.00048 * 4 2 1 6 6 C 1.40100 * 119.24923 * 179.97438 * 5 4 2 7 7 C 1.40852 * 132.85937 * 180.02562 * 6 5 4 8 8 C 1.46565 * 126.58697 * 0.03596 * 7 6 5 9 9 O 1.21722 * 119.99361 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00251 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00104 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.84966 * 23.80339 * 11 10 8 13 13 C 1.53780 * 113.61601 * 154.99929 * 11 10 8 14 14 C 1.53778 * 87.08132 * 89.11526 * 13 11 10 15 15 H 1.09000 * 113.61973 * 270.80134 * 14 13 11 16 16 C 1.50701 * 113.61405 * 139.97858 * 14 13 11 17 17 C 1.38189 * 119.99073 * 300.00308 * 16 14 13 18 18 C 1.38228 * 120.05232 * 179.97438 * 17 16 14 19 19 C 1.38450 * 120.02255 * 0.02562 * 18 17 16 20 20 F 1.35107 * 120.00879 * 179.97438 * 19 18 17 21 21 C 1.38440 * 119.97851 * 359.97438 * 19 18 17 22 22 C 1.38397 * 119.94407 * 359.72388 * 21 19 18 23 23 F 1.35110 * 120.00859 * 180.27258 * 22 21 19 24 24 C 1.53782 * 113.61613 * 252.49981 * 11 10 8 25 25 C 1.40555 * 106.83683 * 180.02562 * 7 6 5 26 26 N 1.30747 * 108.74445 * 359.97438 * 25 7 6 27 27 N 1.36569 * 120.23431 * 0.02562 * 6 5 4 28 28 C 1.36250 * 120.07829 * 0.02645 * 27 6 5 29 29 C 1.35186 * 120.70396 * 359.64810 * 28 27 6 30 30 H 0.96703 * 114.00193 * 300.00032 * 1 2 3 31 31 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 32 32 H 1.48501 * 109.99997 * 178.67824 * 3 2 1 33 33 H 1.48495 * 110.00011 * 300.00099 * 3 2 1 34 34 H 1.07999 * 120.37507 * 0.02562 * 5 4 2 35 35 H 0.97003 * 119.99997 * 0.02562 * 10 8 7 36 36 H 1.08995 * 113.61803 * 203.66775 * 13 11 10 37 37 H 1.09004 * 113.61448 * 334.48619 * 13 11 10 38 38 H 1.08004 * 119.97134 * 359.97438 * 17 16 14 39 39 H 1.08000 * 119.98637 * 179.97438 * 18 17 16 40 40 H 1.07997 * 120.02544 * 179.97438 * 21 19 18 41 41 H 1.08995 * 113.61256 * 25.42773 * 24 11 10 42 42 H 1.08997 * 113.61353 * 156.33557 * 24 11 10 43 43 H 1.08004 * 125.63140 * 179.97438 * 25 7 6 44 44 H 1.08001 * 119.64422 * 180.02562 * 28 27 6 45 45 H 1.08001 * 119.83881 * 180.31526 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7161 -1.8203 -1.1123 6 6 3.1705 -2.4639 -2.2708 7 6 3.9740 -3.6013 -2.4824 8 6 4.5739 -4.4514 -1.4502 9 8 4.3940 -4.1983 -0.2732 10 7 5.3247 -5.5131 -1.8041 11 6 5.9239 -6.3632 -0.7723 12 1 5.3917 -6.3146 0.1778 13 6 6.2094 -7.7982 -1.2456 14 6 7.5870 -7.2896 -1.7020 15 1 7.5963 -6.9118 -2.7243 16 6 8.7095 -8.2564 -1.4252 17 6 8.9803 -8.6472 -0.1277 18 6 10.0092 -9.5342 0.1276 19 6 10.7700 -10.0318 -0.9166 20 9 11.7759 -10.8984 -0.6667 21 6 10.4996 -9.6410 -2.2169 22 6 9.4652 -8.7577 -2.4719 23 9 9.1967 -8.3797 -3.7409 24 6 7.4458 -6.1887 -0.6376 25 6 4.0899 -3.7647 -3.8736 26 7 3.4171 -2.8129 -4.4660 27 7 2.8305 -1.9830 -3.5030 28 6 2.0472 -0.8734 -3.6106 29 6 1.5920 -0.2401 -2.5064 30 1 -0.3934 0.4417 0.7651 31 1 1.7923 -0.5139 0.8900 32 1 3.5346 1.7702 0.0322 33 1 1.5616 2.4679 -1.2084 34 1 2.9833 -2.1989 -0.1368 35 1 5.4684 -5.7145 -2.7421 36 1 6.2588 -8.5241 -0.4340 37 1 5.5689 -8.1231 -2.0656 38 1 8.3876 -8.2592 0.6876 39 1 10.2202 -9.8386 1.1421 40 1 11.0928 -10.0284 -3.0320 41 1 7.8044 -5.2137 -0.9676 42 1 7.8332 -6.4745 0.3403 43 1 4.6434 -4.5473 -4.3712 44 1 1.7822 -0.4993 -4.5885 45 1 0.9678 0.6354 -2.6080 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:04:54 Heat of formation + Delta-G solvation = 10.350256 kcal Electronic energy + Delta-G solvation = -33782.579977 eV Core-core repulsion = 28791.719751 eV Total energy + Delta-G solvation = -4990.860226 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.123 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -50.07274 -50.04431 -43.42268 -41.45433 -40.09869 -39.23945 -38.58217 -37.27751 -34.63212 -34.26168 -32.27942 -31.92064 -31.56187 -30.24936 -27.43469 -26.70292 -26.24030 -25.08712 -24.32329 -23.80857 -23.12372 -22.69122 -21.41247 -20.23762 -19.43757 -19.22139 -18.44200 -18.22238 -17.98785 -17.64509 -17.29957 -17.05563 -17.01944 -16.86638 -16.73100 -16.53444 -16.37423 -15.94077 -15.75816 -15.55393 -15.50139 -15.41811 -15.17820 -14.67728 -14.58903 -14.31235 -13.99850 -13.92766 -13.73381 -13.54744 -13.43530 -13.40712 -13.11598 -12.82994 -12.59529 -12.55531 -12.21137 -12.02297 -11.98266 -11.75617 -11.68817 -11.29486 -11.03431 -10.85247 -10.23936 -10.14183 -10.06531 -9.59516 -8.91199 -5.01665 -0.69142 -0.25003 -0.12529 -0.03377 0.90244 0.93453 1.22527 1.63866 1.90868 1.96961 2.14485 2.28146 2.39219 2.82220 2.94941 3.09593 3.30934 3.40574 3.45706 3.49915 3.59807 3.66782 3.69457 3.69759 3.80095 3.87344 3.90783 3.95496 4.08825 4.12614 4.18245 4.25971 4.32013 4.47772 4.61123 4.66089 4.71913 4.75799 4.84065 4.87521 4.91722 4.93293 4.99997 5.02505 5.04541 5.08692 5.13544 5.18341 5.29164 5.52751 5.62704 5.72728 6.18068 6.54328 6.86156 7.23810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.082 4.082 3 Si 0.802 3.198 4 C -0.033 4.033 5 C -0.118 4.118 6 C 0.148 3.852 7 C -0.336 4.336 8 C 0.603 3.397 9 O -0.586 6.586 10 N -0.699 5.699 11 C 0.119 3.881 12 H 0.095 0.905 13 C -0.123 4.123 14 C -0.072 4.072 15 H 0.103 0.897 16 C -0.111 4.111 17 C -0.056 4.056 18 C -0.154 4.154 19 C 0.107 3.893 20 F -0.142 7.142 21 C -0.199 4.199 22 C 0.115 3.885 23 F -0.138 7.138 24 C -0.138 4.138 25 C 0.131 3.869 26 N -0.338 5.338 27 N -0.275 5.275 28 C 0.108 3.892 29 C -0.151 4.151 30 H 0.409 0.591 31 H 0.094 0.906 32 H -0.305 1.305 33 H -0.274 1.274 34 H 0.157 0.843 35 H 0.412 0.588 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.172 0.828 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.236 0.764 44 H 0.205 0.795 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 3.192 3.388 5.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.190 4.190 3 Si 0.705 3.295 4 C -0.038 4.038 5 C -0.138 4.138 6 C 0.027 3.973 7 C -0.351 4.351 8 C 0.393 3.607 9 O -0.467 6.467 10 N -0.349 5.349 11 C 0.013 3.987 12 H 0.113 0.887 13 C -0.160 4.160 14 C -0.090 4.090 15 H 0.121 0.879 16 C -0.112 4.112 17 C -0.073 4.073 18 C -0.173 4.173 19 C 0.087 3.913 20 F -0.121 7.121 21 C -0.218 4.218 22 C 0.096 3.904 23 F -0.116 7.116 24 C -0.177 4.177 25 C -0.050 4.050 26 N -0.158 5.158 27 N -0.039 5.039 28 C -0.017 4.017 29 C -0.172 4.172 30 H 0.261 0.739 31 H 0.112 0.888 32 H -0.233 1.233 33 H -0.200 1.200 34 H 0.175 0.825 35 H 0.249 0.751 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.189 0.811 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.252 0.748 44 H 0.222 0.778 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.847 4.011 1.953 5.293 hybrid contribution 0.945 -1.262 -0.456 1.641 sum -1.903 2.750 1.497 3.664 Atomic orbital electron populations 1.86424 1.16015 1.82608 1.51690 1.24877 0.86818 1.11394 0.95916 0.94259 0.76996 0.72867 0.85363 1.19873 0.94842 0.93115 0.95981 1.20715 1.00058 0.95131 0.97884 1.19568 0.96151 0.94873 0.86707 1.19725 1.17003 1.04035 0.94356 1.16897 0.77149 0.79868 0.86750 1.90749 1.63256 1.72825 1.19920 1.45261 1.51339 1.27795 1.10545 1.21846 0.93777 0.90719 0.92336 0.88711 1.23424 0.94483 0.95372 1.02766 1.21544 0.92155 0.94602 1.00711 0.87920 1.19983 0.98422 1.00170 0.92621 1.21078 0.95702 0.94374 0.96159 1.21519 0.96535 0.99348 0.99906 1.17567 0.88139 0.91907 0.93653 1.91526 1.58346 1.67307 1.94931 1.21163 1.00890 1.02178 0.97604 1.17320 0.96389 0.97416 0.79265 1.91504 1.93149 1.89813 1.37142 1.23595 0.95587 0.98484 0.99998 1.24648 0.93366 0.95714 0.91262 1.77575 1.19537 1.07229 1.11482 1.46304 1.32553 1.19489 1.05559 1.22175 0.91455 0.84696 1.03369 1.21160 1.02762 1.03197 0.90033 0.73871 0.88847 1.23295 1.20017 0.82536 0.75143 0.86847 0.89652 0.81060 0.81989 0.83215 0.91569 0.87109 0.74761 0.77836 0.80034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.06 12.75 -148.98 -1.90 0.16 16 2 C -0.08 0.23 2.81 71.24 0.20 0.43 16 3 Si 0.80 -4.08 31.98 68.60 2.19 -1.89 16 4 C -0.03 -0.11 4.53 -19.82 -0.09 -0.20 16 5 C -0.12 -0.88 9.35 22.30 0.21 -0.67 16 6 C 0.15 1.37 6.76 39.50 0.27 1.64 16 7 C -0.34 -2.42 6.17 -19.90 -0.12 -2.54 16 8 C 0.60 4.44 7.78 86.42 0.67 5.12 16 9 O -0.59 -8.28 15.30 -4.42 -0.07 -8.35 16 10 N -0.70 0.30 5.25 -444.09 -2.33 -2.03 16 11 C 0.12 -0.25 4.32 45.52 0.20 -0.05 16 12 H 0.09 0.13 7.46 -2.39 -0.02 0.11 16 13 C -0.12 0.75 7.29 31.12 0.23 0.98 16 14 C -0.07 0.32 3.78 -11.01 -0.04 0.28 16 15 H 0.10 -0.42 7.45 -2.39 -0.02 -0.43 16 16 C -0.11 0.25 5.29 -19.82 -0.10 0.14 16 17 C -0.06 0.28 8.61 22.26 0.19 0.47 16 18 C -0.15 0.43 10.02 22.32 0.22 0.65 16 19 C 0.11 0.19 7.30 22.37 0.16 0.35 16 20 F -0.14 -0.69 17.27 44.97 0.78 0.09 16 21 C -0.20 -0.38 10.01 22.36 0.22 -0.16 16 22 C 0.12 0.18 7.24 22.37 0.16 0.34 16 23 F -0.14 -0.48 16.36 44.97 0.74 0.25 16 24 C -0.14 0.52 7.25 31.12 0.23 0.75 16 25 C 0.13 0.36 11.44 85.42 0.98 1.34 16 26 N -0.34 -2.47 12.57 -56.61 -0.71 -3.19 16 27 N -0.27 -2.06 3.86 -187.27 -0.72 -2.78 16 28 C 0.11 0.21 11.17 83.30 0.93 1.14 16 29 C -0.15 -0.15 8.67 22.03 0.19 0.04 16 30 H 0.41 -5.80 8.74 -74.05 -0.65 -6.45 16 31 H 0.09 -0.47 7.71 -2.39 -0.02 -0.49 16 32 H -0.31 -0.99 7.11 99.48 0.71 -0.28 16 33 H -0.27 0.24 7.08 99.48 0.70 0.94 16 34 H 0.16 1.27 7.01 -2.91 -0.02 1.24 16 35 H 0.41 -2.45 7.62 -92.71 -0.71 -3.16 16 36 H 0.11 -0.94 7.72 -2.39 -0.02 -0.96 16 37 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.17 -1.79 6.65 -2.91 -0.02 -1.81 16 39 H 0.16 -1.09 8.06 -2.91 -0.02 -1.11 16 40 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 41 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.11 -0.74 6.31 -2.39 -0.02 -0.75 16 43 H 0.24 -1.69 7.46 -2.91 -0.02 -1.71 16 44 H 0.20 -0.95 8.06 -2.91 -0.02 -0.97 16 45 H 0.18 -0.68 7.54 -2.91 -0.02 -0.70 16 Total: 0.00 -27.24 391.48 2.45 -24.79 By element: Atomic # 1 Polarization: -16.90 SS G_CDS: -0.22 Total: -17.12 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 4.70 Total: 10.06 kcal Atomic # 7 Polarization: -4.23 SS G_CDS: -3.77 Total: -8.00 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -1.97 Total: -8.19 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 1.51 Total: 0.34 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.19 Total: -1.89 kcal Total: -27.24 2.45 -24.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.144 kcal (2) G-P(sol) polarization free energy of solvation -27.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds